==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 23-MAR-07 2EKK . COMPND 2 MOLECULE: UBA DOMAIN FROM E3 UBIQUITIN-PROTEIN LIGASE . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.KITASAKA,A.Z.M.RUHUL MOMEN,H.HIROTA,Y.MUTO,S.YOKOYAMA, . 47 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3666.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 27 57.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 24 51.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 131 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-179.5 -7.7 17.6 -21.6 2 2 A S + 0 0 130 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.552 360.0 149.2 -78.0 138.9 -8.7 16.7 -18.0 3 3 A S + 0 0 123 -2,-0.2 2,-0.3 2,-0.0 0, 0.0 -0.957 4.1 112.7-167.2 150.6 -6.4 14.3 -16.2 4 4 A G - 0 0 75 -2,-0.3 2,-0.4 2,-0.0 -2,-0.0 -0.890 61.3 -44.9 177.7-147.3 -5.2 13.4 -12.7 5 5 A S - 0 0 92 -2,-0.3 2,-0.4 4,-0.0 4,-0.1 -0.952 40.8-169.8-119.5 135.9 -5.4 10.8 -10.0 6 6 A S - 0 0 120 -2,-0.4 -2,-0.0 2,-0.2 0, 0.0 -0.990 54.2 -35.0-128.7 125.5 -8.6 9.1 -8.8 7 7 A G S S- 0 0 70 -2,-0.4 0, 0.0 2,-0.1 0, 0.0 -0.212 109.0 -12.9 64.1-156.5 -8.9 6.9 -5.7 8 8 A V S S- 0 0 35 1,-0.1 2,-0.4 -3,-0.1 -2,-0.2 0.305 77.1-108.6 -57.5-163.3 -6.0 4.7 -4.7 9 9 A N > - 0 0 71 1,-0.1 4,-2.2 18,-0.1 5,-0.1 -0.988 7.3-150.5-141.5 127.7 -3.1 4.0 -7.1 10 10 A Q H >>S+ 0 0 143 -2,-0.4 4,-4.0 2,-0.2 5,-0.6 0.902 94.4 67.9 -60.2 -43.6 -2.3 0.8 -8.9 11 11 A Q H >5S+ 0 0 104 1,-0.2 4,-4.0 2,-0.2 -1,-0.2 0.917 109.2 32.8 -39.0 -72.0 1.4 1.7 -8.9 12 12 A Q H >5S+ 0 0 31 2,-0.2 4,-3.5 1,-0.2 5,-0.3 0.928 120.3 53.9 -52.9 -51.1 1.8 1.3 -5.1 13 13 A L H X5S+ 0 0 7 -4,-2.2 4,-3.8 1,-0.2 5,-0.3 0.959 116.9 35.2 -47.1 -67.7 -0.9 -1.4 -5.1 14 14 A Q H X5S+ 0 0 99 -4,-4.0 4,-2.8 1,-0.2 -1,-0.2 0.914 114.4 60.0 -53.7 -47.7 0.9 -3.5 -7.7 15 15 A Q H XX S+ 0 0 5 -4,-3.5 3,-1.1 2,-0.2 4,-1.0 0.974 114.8 58.5 -67.9 -57.1 3.4 -4.0 -3.0 17 17 A M H 3X S+ 0 0 45 -4,-3.8 4,-1.1 -5,-0.3 3,-0.5 0.779 103.6 57.4 -42.4 -31.7 1.2 -6.8 -4.3 18 18 A D H 3< S+ 0 0 122 -4,-2.8 -1,-0.3 -5,-0.3 -2,-0.2 0.930 93.8 63.0 -66.8 -47.3 4.3 -7.7 -6.2 19 19 A M H << S- 0 0 114 -4,-1.2 -1,-0.2 -3,-1.1 -2,-0.2 0.754 133.6 -86.4 -48.5 -26.4 6.4 -8.1 -3.1 20 20 A G H < S+ 0 0 56 -4,-1.0 2,-0.2 -3,-0.5 -2,-0.2 0.728 82.3 128.0 114.5 67.5 3.9 -10.8 -2.2 21 21 A F < - 0 0 43 -4,-1.1 2,-0.5 -5,-0.1 -1,-0.1 -0.698 57.3 -89.4-134.6-174.1 0.8 -9.5 -0.6 22 22 A T > - 0 0 83 -2,-0.2 4,-3.6 1,-0.1 5,-0.2 -0.903 21.3-137.2-108.6 130.9 -3.0 -9.6 -0.8 23 23 A R H > S+ 0 0 134 -2,-0.5 4,-3.6 1,-0.2 5,-0.3 0.838 104.3 63.6 -49.5 -36.7 -4.9 -7.0 -2.9 24 24 A E H > S+ 0 0 172 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.970 113.9 28.4 -51.8 -64.9 -7.3 -6.9 0.1 25 25 A H H > S+ 0 0 29 2,-0.2 4,-4.5 1,-0.2 -2,-0.2 0.926 118.5 60.1 -63.4 -46.7 -4.8 -5.5 2.5 26 26 A A H X S+ 0 0 0 -4,-3.6 4,-2.4 2,-0.2 -2,-0.2 0.934 109.2 42.5 -44.6 -60.3 -2.8 -3.8 -0.2 27 27 A M H X S+ 0 0 64 -4,-3.6 4,-2.8 1,-0.2 5,-0.2 0.963 117.3 44.8 -51.3 -63.6 -5.8 -1.7 -1.2 28 28 A E H X S+ 0 0 94 -4,-2.2 4,-4.5 -5,-0.3 5,-0.3 0.885 109.9 59.4 -48.4 -45.2 -6.9 -0.9 2.4 29 29 A A H X S+ 0 0 0 -4,-4.5 4,-4.6 2,-0.2 -1,-0.2 0.960 110.8 38.0 -47.5 -67.4 -3.2 -0.2 3.1 30 30 A L H < S+ 0 0 10 -4,-2.4 -2,-0.2 2,-0.2 -1,-0.2 0.952 117.8 50.7 -48.9 -60.4 -2.9 2.5 0.6 31 31 A L H < S+ 0 0 100 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.2 0.914 116.9 41.0 -42.8 -56.5 -6.4 3.8 1.3 32 32 A N H < S+ 0 0 105 -4,-4.5 -2,-0.2 -5,-0.2 -1,-0.2 0.963 122.1 44.8 -57.5 -56.1 -5.6 3.9 5.0 33 33 A T S < S- 0 0 18 -4,-4.6 3,-0.1 -5,-0.3 -3,-0.0 0.234 70.6-151.6 -70.9-160.2 -2.1 5.3 4.3 34 34 A S + 0 0 99 1,-0.4 2,-0.2 -26,-0.0 -1,-0.1 0.439 69.6 48.9-143.3 -48.7 -1.2 8.1 2.0 35 35 A T S > S- 0 0 70 1,-0.1 4,-1.5 -23,-0.0 -1,-0.4 -0.473 83.9-110.4 -97.6 170.9 2.3 7.6 0.7 36 36 A M H > S+ 0 0 58 2,-0.2 4,-1.8 1,-0.2 3,-0.4 0.971 114.3 53.0 -63.7 -57.2 4.0 4.6 -0.7 37 37 A E H > S+ 0 0 151 1,-0.3 4,-1.6 2,-0.2 3,-0.4 0.922 106.1 53.3 -42.2 -62.1 6.3 4.0 2.2 38 38 A Q H > S+ 0 0 87 1,-0.3 4,-2.4 2,-0.2 -1,-0.3 0.873 104.7 57.4 -41.1 -48.7 3.5 4.0 4.7 39 39 A A H X S+ 0 0 0 -4,-1.5 4,-2.4 -3,-0.4 5,-0.3 0.940 101.9 54.6 -48.5 -56.8 1.8 1.4 2.5 40 40 A T H X S+ 0 0 27 -4,-1.8 4,-4.2 -3,-0.4 5,-0.3 0.911 108.4 49.0 -42.3 -57.9 4.8 -0.9 2.9 41 41 A E H X S+ 0 0 129 -4,-1.6 4,-3.0 1,-0.2 5,-0.3 0.947 107.1 54.0 -47.6 -61.9 4.6 -0.7 6.7 42 42 A Y H < S+ 0 0 49 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.857 117.4 38.3 -40.5 -46.8 0.9 -1.5 6.7 43 43 A L H >< S+ 0 0 0 -4,-2.4 3,-2.1 -3,-0.3 -1,-0.3 0.901 112.7 55.6 -72.8 -43.2 1.6 -4.6 4.7 44 44 A L H 3< S+ 0 0 111 -4,-4.2 -2,-0.2 1,-0.3 -1,-0.2 0.770 108.5 50.5 -59.6 -25.8 4.8 -5.2 6.6 45 45 A T T 3< S+ 0 0 98 -4,-3.0 -1,-0.3 -5,-0.3 -2,-0.2 0.479 115.9 44.1 -89.4 -5.2 2.6 -5.2 9.7 46 46 A H < 0 0 116 -3,-2.1 -1,-0.3 -5,-0.3 -2,-0.1 -0.641 360.0 360.0-141.9 78.8 0.2 -7.6 8.0 47 47 A P 0 0 143 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 0.644 360.0 360.0 -75.0 360.0 2.2 -10.4 6.3