==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 27-MAR-07 2ELH . COMPND 2 MOLECULE: CG11849-PA; . SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; . AUTHOR N.TOCHIO,S.KOSHIBA,S.WATANABE,T.HARADA,T.UMEHARA,A.TANAKA, . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8503.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 56.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 35.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 125 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 166.1 -31.9 -20.1 -21.2 2 2 A S + 0 0 132 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.933 360.0 165.4-157.8 129.9 -28.2 -21.2 -21.3 3 3 A S + 0 0 130 -2,-0.3 0, 0.0 1,-0.0 0, 0.0 -0.925 13.2 148.8-141.1 164.7 -25.8 -22.4 -18.7 4 4 A G + 0 0 72 -2,-0.3 3,-0.3 2,-0.0 -1,-0.0 0.126 10.1 151.1 164.9 65.4 -22.4 -24.1 -18.5 5 5 A S + 0 0 123 1,-0.2 -2,-0.0 2,-0.0 0, 0.0 -0.193 32.4 126.6-101.7 40.2 -20.2 -23.3 -15.5 6 6 A S - 0 0 108 2,-0.0 -1,-0.2 0, 0.0 -2,-0.0 0.942 49.2-167.0 -61.5 -49.7 -18.5 -26.7 -15.5 7 7 A G - 0 0 52 -3,-0.3 2,-0.4 1,-0.1 -2,-0.0 0.251 11.9-124.8 75.3 155.4 -15.0 -25.2 -15.7 8 8 A M - 0 0 143 2,-0.1 2,-0.6 0, 0.0 -1,-0.1 -0.994 9.5-160.1-142.5 132.9 -11.7 -27.0 -16.4 9 9 A N + 0 0 158 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 -0.698 41.6 135.4-113.0 78.3 -8.5 -27.3 -14.4 10 10 A I - 0 0 136 -2,-0.6 2,-1.1 0, 0.0 -2,-0.1 -0.927 54.7-129.1-125.8 150.2 -5.8 -28.3 -17.0 11 11 A R + 0 0 250 -2,-0.3 3,-0.1 3,-0.0 -2,-0.0 -0.680 39.8 175.5 -98.7 80.5 -2.3 -27.1 -17.6 12 12 A M - 0 0 141 -2,-1.1 4,-0.1 1,-0.2 0, 0.0 -0.183 41.3 -64.2 -76.9 174.0 -2.3 -26.4 -21.4 13 13 A G - 0 0 37 1,-0.2 2,-2.4 2,-0.1 -1,-0.2 -0.017 58.9 -92.6 -54.4 163.8 0.6 -24.9 -23.3 14 14 A T S S+ 0 0 149 -3,-0.1 2,-0.3 2,-0.0 -1,-0.2 -0.230 105.2 69.8 -76.1 51.4 1.7 -21.3 -22.7 15 15 A K + 0 0 165 -2,-2.4 2,-0.3 2,-0.0 -2,-0.1 -0.872 51.5 150.7-168.8 132.6 -0.6 -20.0 -25.4 16 16 A G - 0 0 47 -2,-0.3 2,-1.6 2,-0.1 -2,-0.0 -0.946 48.0-120.8-166.7 143.9 -4.4 -19.7 -25.8 17 17 A K S S+ 0 0 216 -2,-0.3 -2,-0.0 2,-0.0 0, 0.0 -0.264 89.5 76.8 -81.9 50.9 -7.0 -17.6 -27.5 18 18 A R S S- 0 0 153 -2,-1.6 -2,-0.1 0, 0.0 0, 0.0 -0.989 79.6-106.8-158.8 150.7 -8.6 -16.7 -24.2 19 19 A P - 0 0 122 0, 0.0 2,-0.4 0, 0.0 3,-0.1 -0.042 33.6-115.6 -69.8 177.0 -8.0 -14.4 -21.2 20 20 A L - 0 0 137 2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.969 9.4-132.2-123.4 134.7 -6.9 -15.5 -17.7 21 21 A R S S+ 0 0 236 -2,-0.4 -1,-0.1 2,-0.0 0, 0.0 0.883 90.7 79.4 -46.4 -45.2 -8.8 -15.2 -14.5 22 22 A S S S- 0 0 60 1,-0.1 -2,-0.3 -3,-0.1 2,-0.2 -0.270 76.5-140.6 -65.6 152.4 -5.8 -13.7 -12.8 23 23 A L - 0 0 97 1,-0.1 -1,-0.1 2,-0.0 -2,-0.0 -0.682 19.3 -96.7-112.4 167.5 -5.0 -10.1 -13.4 24 24 A T >> - 0 0 90 -2,-0.2 4,-0.7 1,-0.1 3,-0.6 -0.492 23.0-126.9 -83.4 152.9 -1.7 -8.1 -14.0 25 25 A P H 3> S+ 0 0 30 0, 0.0 4,-0.9 0, 0.0 44,-0.2 0.709 108.2 63.4 -69.8 -20.7 0.2 -6.3 -11.2 26 26 A R H 3> S+ 0 0 139 1,-0.2 4,-2.0 2,-0.2 43,-0.0 0.811 89.1 68.3 -73.7 -31.0 0.1 -3.1 -13.3 27 27 A D H <> S+ 0 0 69 -3,-0.6 4,-0.9 1,-0.2 -1,-0.2 0.917 98.7 50.1 -53.7 -47.5 -3.7 -3.0 -13.1 28 28 A K H X S+ 0 0 44 -4,-0.7 4,-2.3 1,-0.2 3,-0.5 0.903 106.2 56.2 -59.0 -43.1 -3.6 -2.2 -9.4 29 29 A I H X S+ 0 0 23 -4,-0.9 4,-2.1 1,-0.2 -1,-0.2 0.911 92.4 71.1 -55.8 -45.6 -1.0 0.5 -10.0 30 30 A H H X S+ 0 0 101 -4,-2.0 4,-0.9 1,-0.2 3,-0.2 0.879 111.1 30.0 -36.1 -57.8 -3.4 2.3 -12.4 31 31 A A H X S+ 0 0 7 -4,-0.9 4,-1.3 -3,-0.5 3,-0.3 0.924 106.0 74.2 -71.6 -46.2 -5.7 3.3 -9.5 32 32 A I H X S+ 0 0 3 -4,-2.3 4,-1.3 1,-0.3 -1,-0.2 0.824 98.1 50.9 -33.6 -45.9 -2.9 3.5 -6.9 33 33 A Q H >X S+ 0 0 100 -4,-2.1 4,-3.0 -3,-0.2 3,-0.7 0.971 100.3 60.9 -60.0 -57.4 -1.9 6.7 -8.6 34 34 A R H 3X>S+ 0 0 120 -4,-0.9 4,-2.7 -3,-0.3 5,-0.9 0.876 101.8 53.2 -34.5 -61.6 -5.3 8.3 -8.6 35 35 A I H 3<5S+ 0 0 22 -4,-1.3 -1,-0.3 1,-0.3 -2,-0.2 0.900 113.7 42.5 -42.7 -52.9 -5.4 8.1 -4.8 36 36 A H H <<5S+ 0 0 91 -4,-1.3 -1,-0.3 -3,-0.7 -2,-0.2 0.904 109.8 58.2 -63.0 -42.6 -2.1 10.0 -4.6 37 37 A D H <5S- 0 0 139 -4,-3.0 -2,-0.2 -5,-0.1 -1,-0.2 0.907 135.3 -77.9 -54.2 -45.4 -3.2 12.4 -7.4 38 38 A G T <5S+ 0 0 56 -4,-2.7 -3,-0.2 -5,-0.2 -4,-0.1 0.107 90.8 121.7 172.1 -38.6 -6.1 13.5 -5.3 39 39 A E < - 0 0 94 -5,-0.9 2,-0.3 1,-0.1 -1,-0.1 0.109 62.9-109.4 -42.2 162.4 -8.9 10.9 -5.4 40 40 A S > - 0 0 70 1,-0.1 4,-3.0 -4,-0.0 5,-0.4 -0.752 18.2-116.2-102.7 149.1 -10.0 9.3 -2.1 41 41 A K H > S+ 0 0 59 -2,-0.3 4,-2.9 1,-0.2 5,-0.1 0.907 119.6 40.8 -44.6 -52.2 -9.4 5.8 -0.9 42 42 A A H > S+ 0 0 32 2,-0.2 4,-2.6 1,-0.2 5,-0.4 0.937 111.7 56.0 -63.9 -48.6 -13.2 5.1 -1.0 43 43 A S H > S+ 0 0 56 1,-0.2 4,-1.5 2,-0.2 -2,-0.2 0.919 115.8 37.7 -49.7 -50.3 -13.7 7.0 -4.2 44 44 A V H X S+ 0 0 0 -4,-3.0 4,-1.4 2,-0.2 5,-0.4 0.945 111.6 59.0 -68.2 -49.9 -11.2 4.8 -6.0 45 45 A A H >X>S+ 0 0 0 -4,-2.9 5,-2.2 -5,-0.4 4,-2.1 0.926 112.3 39.0 -43.5 -60.0 -12.1 1.6 -4.2 46 46 A R H 3<5S+ 0 0 198 -4,-2.6 -1,-0.3 3,-0.3 -2,-0.2 0.850 101.0 78.2 -61.4 -35.2 -15.7 1.8 -5.5 47 47 A D H 3<5S+ 0 0 107 -4,-1.5 -1,-0.2 -5,-0.4 -2,-0.2 0.893 112.8 20.1 -38.4 -57.8 -14.4 3.0 -8.8 48 48 A I H <<5S- 0 0 89 -4,-1.4 -1,-0.2 -3,-0.5 -2,-0.2 0.789 122.4-101.1 -85.1 -31.1 -13.4 -0.5 -9.8 49 49 A G T <5S+ 0 0 59 -4,-2.1 -3,-0.3 -5,-0.4 -4,-0.1 0.790 72.8 130.8 110.0 50.9 -15.7 -2.2 -7.3 50 50 A V < - 0 0 36 -5,-2.2 2,-0.3 -6,-0.1 -1,-0.3 -0.963 60.7 -98.5-134.5 151.0 -13.5 -3.3 -4.3 51 51 A P >> - 0 0 79 0, 0.0 4,-1.6 0, 0.0 3,-0.6 -0.498 32.0-123.1 -69.7 126.3 -13.7 -2.9 -0.5 52 52 A E H 3> S+ 0 0 100 -2,-0.3 4,-2.1 1,-0.2 -7,-0.0 0.796 110.8 65.7 -35.7 -36.8 -11.6 -0.0 0.8 53 53 A S H 3> S+ 0 0 89 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.976 104.1 38.9 -52.2 -67.5 -10.0 -2.7 2.9 54 54 A T H X> S+ 0 0 62 -3,-0.6 3,-1.2 1,-0.2 4,-0.8 0.935 109.5 62.8 -49.4 -54.8 -8.4 -4.6 0.0 55 55 A L H >X S+ 0 0 3 -4,-1.6 4,-1.3 1,-0.3 3,-1.1 0.887 98.2 55.4 -36.0 -61.8 -7.5 -1.4 -1.8 56 56 A R H 3X S+ 0 0 149 -4,-2.1 4,-2.8 1,-0.3 -1,-0.3 0.869 95.4 70.2 -41.6 -46.3 -5.2 -0.3 1.0 57 57 A G H < S+ 0 0 158 -4,-2.8 3,-0.5 1,-0.2 -1,-0.2 0.967 118.8 29.1 -60.4 -56.0 0.8 -0.5 1.2 61 61 A N H >X S+ 0 0 59 -4,-1.8 4,-2.1 -3,-0.3 3,-0.7 0.278 86.9 119.2 -88.3 10.7 3.1 -2.6 -1.0 62 62 A E H 3X + 0 0 9 -4,-1.1 4,-3.1 -3,-0.4 5,-0.2 0.860 62.2 70.7 -42.0 -44.0 2.7 -0.0 -3.7 63 63 A D H <> S+ 0 0 122 -3,-0.5 4,-0.7 -4,-0.3 3,-0.3 0.912 109.0 30.0 -38.5 -67.0 6.5 0.4 -3.5 64 64 A K H X> S+ 0 0 131 -3,-0.7 4,-2.2 1,-0.2 3,-2.0 0.940 113.5 63.8 -61.7 -49.1 7.2 -3.0 -5.1 65 65 A L H 3X S+ 0 0 11 -4,-2.1 4,-1.5 1,-0.3 -1,-0.2 0.860 96.0 60.3 -42.3 -43.9 4.1 -3.0 -7.2 66 66 A R H 3< S+ 0 0 143 -4,-3.1 -1,-0.3 -3,-0.3 4,-0.3 0.868 116.5 31.4 -54.3 -38.8 5.5 0.0 -9.0 67 67 A F H < S+ 0 0 66 -4,-2.2 3,-1.2 1,-0.2 -2,-0.2 0.954 81.7 62.8 -59.3 -53.0 6.4 -5.3 -10.2 69 69 A S T 3< S+ 0 0 47 -4,-1.5 -1,-0.2 1,-0.3 -2,-0.1 0.857 95.7 62.7 -39.4 -46.1 4.9 -4.5 -13.6 70 70 A R T 34 S- 0 0 177 -4,-0.3 2,-0.3 -3,-0.3 -1,-0.3 0.920 124.9 -4.6 -47.2 -52.8 8.4 -4.7 -15.0 71 71 A Q << - 0 0 153 -3,-1.2 2,-0.3 -4,-0.9 -1,-0.2 -0.998 63.7-172.3-147.3 146.9 8.7 -8.3 -14.0 72 72 A S - 0 0 95 -2,-0.3 3,-0.1 1,-0.1 -4,-0.0 -0.994 11.3-174.2-144.3 133.8 6.5 -10.9 -12.2 73 73 A A - 0 0 104 -2,-0.3 2,-0.3 1,-0.3 -1,-0.1 0.931 63.6 -50.7 -88.5 -60.6 7.2 -14.4 -11.0 74 74 A T - 0 0 96 3,-0.0 2,-1.1 0, 0.0 -1,-0.3 -0.968 44.6-101.1-173.2 162.0 3.9 -15.6 -9.6 75 75 A D + 0 0 117 -2,-0.3 -3,-0.0 1,-0.1 3,-0.0 -0.701 64.2 129.5 -97.5 83.6 1.0 -14.8 -7.3 76 76 A N + 0 0 134 -2,-1.1 2,-0.3 2,-0.0 -1,-0.1 -0.245 49.4 81.6-128.4 44.3 1.7 -16.9 -4.2 77 77 A L S S- 0 0 164 0, 0.0 2,-0.4 0, 0.0 -3,-0.0 -0.966 75.7-118.7-152.6 132.4 1.5 -14.4 -1.4 78 78 A C - 0 0 100 -2,-0.3 3,-0.1 1,-0.2 -2,-0.0 -0.558 17.2-156.6 -73.3 124.9 -1.5 -12.9 0.5 79 79 A A S S+ 0 0 56 -2,-0.4 2,-0.2 1,-0.1 -1,-0.2 0.974 72.8 1.0 -64.5 -57.1 -1.7 -9.1 -0.0 80 80 A D - 0 0 90 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.769 64.8-178.0-127.9 173.2 -3.6 -8.4 3.2 81 81 A A - 0 0 64 -2,-0.2 0, 0.0 -3,-0.1 0, 0.0 -0.970 40.9 -65.6-168.5 155.7 -5.1 -10.3 6.2 82 82 A L + 0 0 183 -2,-0.3 3,-0.1 1,-0.1 2,-0.1 0.035 63.6 134.7 -42.4 153.2 -7.1 -9.9 9.4 83 83 A G + 0 0 71 1,-0.7 -1,-0.1 0, 0.0 0, 0.0 -0.182 47.0 35.4-161.3-100.3 -5.4 -7.8 12.1 84 84 A D - 0 0 174 -2,-0.1 -1,-0.7 1,-0.0 2,-0.3 -0.142 62.3-150.4 -69.3 169.5 -6.8 -5.0 14.2 85 85 A K - 0 0 161 -3,-0.1 2,-0.7 2,-0.0 -1,-0.0 -0.995 9.9-143.9-147.5 139.1 -10.4 -5.0 15.6 86 86 A M 0 0 166 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.864 360.0 360.0-107.3 101.9 -12.9 -2.3 16.5 87 87 A D 0 0 169 -2,-0.7 -2,-0.0 0, 0.0 0, 0.0 -0.243 360.0 360.0 -49.0 360.0 -15.0 -3.3 19.5