==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOME 20-MAR-00 1EMW . COMPND 2 MOLECULE: S16 RIBOSOMAL PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; . AUTHOR P.ALLARD,A.V.RAK,B.T.WIMBERLY,W.M.CLEMONS JR.,A.KALININ, . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7091.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 56.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 21.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 11.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 14.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 167 0, 0.0 2,-0.5 0, 0.0 63,-0.1 0.000 360.0 360.0 360.0 95.6 -8.8 10.5 -8.3 2 2 A V + 0 0 37 61,-0.3 63,-3.0 60,-0.1 2,-0.4 -0.959 360.0 160.1-126.4 119.4 -7.6 7.6 -6.1 3 3 A K E -A 22 0A 53 19,-2.0 19,-2.0 -2,-0.5 2,-0.4 -0.989 26.4-147.2-140.0 133.2 -4.2 6.0 -6.8 4 4 A I E +A 21 0A 0 -2,-0.4 63,-1.9 61,-0.2 2,-0.2 -0.816 35.7 143.1 -99.7 134.0 -2.0 3.9 -4.5 5 5 A R E -A 20 0A 80 15,-1.9 15,-1.4 -2,-0.4 2,-0.5 -0.850 53.8 -64.1-151.3-171.6 1.8 4.2 -5.0 6 6 A L E -A 19 0A 26 -2,-0.2 2,-0.9 13,-0.2 13,-0.2 -0.720 41.1-150.2 -88.7 126.8 5.1 4.2 -3.1 7 7 A A E -A 18 0A 11 11,-2.5 11,-0.9 -2,-0.5 2,-0.5 -0.808 9.0-148.0 -99.0 104.3 5.6 7.1 -0.7 8 8 A R E +A 17 0A 166 -2,-0.9 9,-0.2 9,-0.2 3,-0.0 -0.554 36.3 148.3 -72.3 118.5 9.2 8.1 -0.4 9 9 A F + 0 0 75 7,-1.3 -1,-0.2 -2,-0.5 8,-0.1 0.750 41.2 84.6-113.5 -61.5 9.9 9.4 3.1 10 10 A G - 0 0 12 6,-0.7 6,-0.0 4,-0.3 -1,-0.0 -0.154 49.6-179.1 -46.6 131.6 13.4 8.6 4.2 11 11 A S S S- 0 0 78 4,-0.1 -1,-0.1 -3,-0.0 -2,-0.0 0.848 76.4 -16.7-101.6 -56.3 15.9 11.2 2.9 12 12 A K S S+ 0 0 181 2,-0.1 -2,-0.1 3,-0.0 0, 0.0 -0.164 131.5 57.0-143.3 40.9 19.3 10.2 4.1 13 13 A H S S+ 0 0 151 1,-0.1 -3,-0.1 0, 0.0 0, 0.0 0.490 112.1 2.4-135.4 -64.6 18.6 7.6 6.9 14 14 A N - 0 0 64 2,-0.1 2,-1.0 0, 0.0 -4,-0.3 -0.938 63.0-138.8-138.3 114.4 16.4 4.7 5.8 15 15 A P + 0 0 59 0, 0.0 2,-0.3 0, 0.0 -4,-0.1 -0.576 49.1 136.3 -74.1 102.1 15.2 4.2 2.2 16 16 A H - 0 0 33 -2,-1.0 -7,-1.3 24,-0.2 -6,-0.7 -0.984 31.7-167.0-149.4 136.9 11.6 3.0 2.6 17 17 A Y E -AB 8 39A 57 22,-1.3 22,-2.6 -2,-0.3 2,-0.3 -0.891 15.1-137.9-118.9 155.1 8.3 3.9 0.8 18 18 A R E -AB 7 38A 54 -11,-0.9 -11,-2.5 -2,-0.3 2,-1.4 -0.771 19.0-123.5-108.0 159.4 4.8 3.1 1.8 19 19 A I E +AB 6 37A 0 18,-0.8 18,-2.6 -2,-0.3 17,-0.9 -0.701 54.4 164.7 -98.8 79.8 2.1 1.9 -0.5 20 20 A V E -AB 5 35A 3 -15,-1.4 -15,-1.9 -2,-1.4 2,-0.7 -0.515 40.2-117.9 -98.0 166.5 -0.3 4.7 0.5 21 21 A V E +AB 4 34A 0 13,-2.2 12,-3.3 -17,-0.2 13,-0.9 -0.887 53.3 130.9-109.2 109.6 -3.5 6.0 -1.2 22 22 A T E -AB 3 32A 11 -19,-2.0 -19,-2.0 -2,-0.7 10,-0.2 -0.687 56.8 -66.3-139.3-166.5 -3.3 9.7 -2.3 23 23 A D - 0 0 61 8,-0.6 -1,-0.3 -2,-0.2 3,-0.1 0.171 68.0 -77.2 -71.7-161.5 -4.0 11.9 -5.4 24 24 A A S S- 0 0 55 1,-0.3 2,-0.3 -22,-0.0 -1,-0.1 0.875 109.9 -8.6 -71.0 -35.0 -2.1 11.6 -8.7 25 25 A R S S- 0 0 191 0, 0.0 -1,-0.3 0, 0.0 5,-0.1 -0.971 79.3 -95.9-161.7 144.9 1.0 13.5 -7.3 26 26 A R - 0 0 144 -2,-0.3 6,-0.0 -3,-0.1 -4,-0.0 -0.009 29.7-166.8 -54.0 169.3 1.9 15.4 -4.2 27 27 A K S S- 0 0 165 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.623 72.2 -13.3-127.7 -55.0 1.6 19.2 -4.4 28 28 A R S S- 0 0 219 3,-0.0 -2,-0.1 0, 0.0 0, 0.0 0.694 141.4 -6.8-120.5 -47.4 3.4 21.0 -1.5 29 29 A D S S- 0 0 99 2,-0.0 -3,-0.1 0, 0.0 0, 0.0 0.625 96.3-111.6-123.2 -30.1 4.2 18.3 1.1 30 30 A G - 0 0 33 -5,-0.1 2,-0.3 1,-0.1 -4,-0.1 0.594 38.6-176.3 97.1 108.9 2.5 15.1 -0.1 31 31 A K - 0 0 147 3,-0.0 -8,-0.6 0, 0.0 2,-0.3 -0.988 9.4-156.0-139.1 148.7 -0.5 13.6 1.7 32 32 A Y E -B 22 0A 99 -2,-0.3 -10,-0.3 -10,-0.2 3,-0.1 -0.793 27.4-122.7-119.8 165.1 -2.6 10.5 1.3 33 33 A I E S- 0 0 88 -12,-3.3 2,-0.3 -2,-0.3 -11,-0.1 0.774 90.4 -24.3 -77.3 -23.9 -6.2 9.6 2.4 34 34 A E E -B 21 0A 79 -13,-0.9 -13,-2.2 -3,-0.0 2,-0.6 -0.973 63.4-105.9-175.6 164.3 -4.9 6.6 4.3 35 35 A K E +B 20 0A 100 -2,-0.3 -15,-0.2 -15,-0.2 21,-0.1 -0.899 40.6 155.1-108.8 116.0 -2.0 4.1 4.6 36 36 A I E + 0 0 3 -17,-0.9 16,-2.8 -2,-0.6 20,-0.3 0.763 62.4 29.3-107.0 -37.4 -2.7 0.5 3.3 37 37 A G E -BC 19 51A 1 -18,-2.6 -18,-0.8 14,-0.3 2,-0.3 -0.772 59.4-152.1-121.6 171.0 0.6 -0.9 2.3 38 38 A Y E -BC 18 50A 59 12,-0.9 12,-1.8 -20,-0.3 2,-0.4 -0.997 11.2-167.6-139.6 142.0 4.3 -0.5 3.3 39 39 A Y E -B 17 0A 42 -22,-2.6 -22,-1.3 -2,-0.3 10,-0.2 -0.989 9.2-177.7-135.3 142.6 7.4 -1.0 1.1 40 40 A D - 0 0 25 -2,-0.4 2,-2.8 -24,-0.2 -24,-0.2 -0.865 19.5-149.4-140.7 105.4 11.1 -1.3 1.9 41 41 A P + 0 0 52 0, 0.0 2,-0.5 0, 0.0 -2,-0.0 -0.367 39.7 157.7 -71.7 70.8 13.6 -1.7 -0.9 42 42 A R - 0 0 121 -2,-2.8 5,-0.2 3,-0.1 2,-0.1 -0.832 35.4-157.8-100.4 130.7 16.1 -3.8 1.2 43 43 A K S S+ 0 0 213 -2,-0.5 -1,-0.1 1,-0.1 0, 0.0 -0.154 76.0 77.1 -97.0 42.2 18.6 -6.0 -0.6 44 44 A T S S+ 0 0 96 1,-0.4 -1,-0.1 -2,-0.1 -2,-0.0 0.750 99.4 1.3-112.4 -66.8 19.2 -8.3 2.4 45 45 A T S S- 0 0 82 2,-0.0 2,-2.3 -3,-0.0 -1,-0.4 -0.926 72.7-106.4-127.4 153.8 16.3 -10.8 2.9 46 46 A P S S+ 0 0 112 0, 0.0 -3,-0.1 0, 0.0 0, 0.0 -0.449 92.7 88.9 -75.3 73.4 13.0 -11.4 1.0 47 47 A D + 0 0 139 -2,-2.3 -2,-0.0 -5,-0.2 3,-0.0 -0.154 42.6 103.2-165.0 58.9 10.7 -9.8 3.6 48 48 A W + 0 0 71 -6,-0.1 2,-0.7 1,-0.0 -8,-0.1 0.549 54.9 93.9-119.4 -14.6 10.2 -6.1 3.1 49 49 A L + 0 0 30 -10,-0.2 2,-0.5 27,-0.0 -10,-0.2 -0.693 45.4 167.5 -83.8 116.8 6.7 -6.0 1.6 50 50 A K E +C 38 0A 150 -12,-1.8 -12,-0.9 -2,-0.7 2,-0.4 -0.865 7.8 159.7-131.4 100.9 4.1 -5.5 4.3 51 51 A V E -C 37 0A 25 -2,-0.5 2,-1.1 -14,-0.3 -14,-0.3 -0.915 42.9-136.1-122.8 153.1 0.5 -4.6 3.1 52 52 A D >> - 0 0 92 -16,-2.8 4,-2.7 -2,-0.4 3,-1.4 -0.619 23.2-169.4-100.0 70.8 -2.9 -4.8 4.7 53 53 A V H 3> S+ 0 0 49 -2,-1.1 4,-1.6 24,-0.3 -1,-0.2 0.770 82.9 64.4 -34.9 -30.9 -4.6 -6.2 1.5 54 54 A E H 3> S+ 0 0 156 2,-0.2 4,-1.2 1,-0.2 -1,-0.3 0.990 114.0 29.1 -60.8 -54.8 -7.9 -5.6 3.3 55 55 A R H <> S+ 0 0 83 -3,-1.4 4,-1.5 1,-0.2 3,-0.4 0.918 120.4 54.6 -70.9 -39.5 -7.3 -1.8 3.4 56 56 A A H X S+ 0 0 0 -4,-2.7 4,-1.5 -20,-0.3 -1,-0.2 0.765 108.3 52.2 -65.8 -17.7 -5.3 -2.1 0.2 57 57 A R H X S+ 0 0 133 -4,-1.6 4,-1.4 -5,-0.5 -1,-0.2 0.768 98.0 64.3 -87.5 -25.2 -8.4 -3.8 -1.2 58 58 A Y H X S+ 0 0 99 -4,-1.2 4,-0.8 -3,-0.4 -2,-0.2 0.934 108.6 41.6 -60.3 -44.7 -10.7 -0.9 -0.1 59 59 A W H ><>S+ 0 0 11 -4,-1.5 5,-2.1 2,-0.2 3,-2.0 0.980 111.6 50.9 -69.7 -55.9 -8.8 1.3 -2.5 60 60 A L H ><5S+ 0 0 53 -4,-1.5 3,-0.7 1,-0.3 -1,-0.2 0.810 110.5 55.9 -53.3 -22.6 -8.6 -1.1 -5.4 61 61 A S H 3<5S+ 0 0 92 -4,-1.4 -1,-0.3 1,-0.2 -2,-0.2 0.755 101.7 54.5 -82.3 -22.8 -12.3 -1.5 -4.7 62 62 A V T <<5S- 0 0 56 -3,-2.0 -1,-0.2 -4,-0.8 -2,-0.2 -0.009 131.3 -89.4 -99.1 32.7 -13.0 2.3 -5.2 63 63 A G T < 5 + 0 0 50 -3,-0.7 2,-0.3 1,-0.2 -61,-0.3 0.827 68.7 173.5 68.5 29.0 -11.3 2.3 -8.6 64 64 A A < - 0 0 7 -5,-2.1 -61,-0.3 -6,-0.1 -1,-0.2 -0.535 24.1-144.0 -71.7 127.3 -7.9 3.0 -7.0 65 65 A Q - 0 0 117 -63,-3.0 2,-0.4 -2,-0.3 -61,-0.2 -0.820 10.9-156.6 -97.6 110.7 -5.2 2.9 -9.6 66 66 A P - 0 0 26 0, 0.0 -61,-0.2 0, 0.0 5,-0.1 -0.698 22.4-116.7 -85.6 129.3 -2.0 1.5 -8.3 67 67 A T > - 0 0 57 -63,-1.9 4,-2.7 -2,-0.4 5,-0.3 -0.033 38.3 -93.6 -55.2 168.6 1.2 2.5 -10.1 68 68 A D H > S+ 0 0 120 2,-0.2 4,-1.8 1,-0.2 -1,-0.1 0.892 127.6 45.9 -55.4 -37.7 3.1 -0.3 -11.9 69 69 A T H > S+ 0 0 74 2,-0.2 4,-0.9 1,-0.2 3,-0.2 0.987 117.7 38.8 -70.4 -58.6 5.3 -0.7 -8.7 70 70 A A H > S+ 0 0 0 1,-0.2 4,-2.0 2,-0.2 -2,-0.2 0.805 113.5 60.1 -63.8 -23.3 2.6 -0.6 -6.1 71 71 A R H X S+ 0 0 126 -4,-2.7 4,-1.4 1,-0.2 -1,-0.2 0.940 104.6 46.8 -69.7 -42.7 0.6 -2.7 -8.5 72 72 A R H < S+ 0 0 146 -4,-1.8 4,-0.4 -5,-0.3 -1,-0.2 0.649 114.1 50.0 -73.4 -10.0 3.2 -5.4 -8.4 73 73 A L H X S+ 0 0 11 -4,-0.9 4,-2.9 2,-0.2 -1,-0.2 0.741 102.7 57.5 -98.2 -24.9 3.3 -5.1 -4.6 74 74 A L H <>S+ 0 0 0 -4,-2.0 5,-2.6 1,-0.2 6,-0.5 0.872 110.3 46.5 -71.1 -30.4 -0.5 -5.3 -4.2 75 75 A R T <5S+ 0 0 109 -4,-1.4 3,-0.5 3,-0.2 -1,-0.2 0.815 113.0 50.0 -77.8 -28.8 -0.2 -8.7 -6.0 76 76 A Q T 45S+ 0 0 111 -4,-0.4 -2,-0.2 1,-0.2 -1,-0.2 0.885 107.1 52.8 -76.4 -37.2 2.7 -9.6 -3.8 77 77 A A T <5S- 0 0 22 -4,-2.9 -24,-0.3 -27,-0.1 -1,-0.2 0.513 122.0-109.5 -75.2 -1.3 0.8 -8.7 -0.7 78 78 A G T 5S+ 0 0 11 -3,-0.5 -3,-0.2 -5,-0.1 5,-0.2 0.963 76.8 134.0 73.8 50.3 -2.0 -11.0 -1.9 79 79 A V < + 0 0 3 -5,-2.6 -4,-0.2 3,-0.1 3,-0.1 0.865 61.1 52.2 -99.3 -49.9 -4.4 -8.2 -2.7 80 80 A F S S+ 0 0 89 -6,-0.5 2,-0.3 1,-0.2 -5,-0.1 0.868 129.1 2.4 -57.9 -32.7 -5.8 -9.0 -6.2 81 81 A R S S- 0 0 170 -6,-0.1 -1,-0.2 0, 0.0 0, 0.0 -0.997 83.5 -98.9-152.0 154.7 -6.7 -12.5 -5.0 82 82 A Q - 0 0 171 -2,-0.3 2,-0.3 -3,-0.1 -4,-0.1 -0.288 36.6-149.9 -70.2 160.3 -6.5 -14.6 -1.7 83 83 A E + 0 0 133 -5,-0.2 2,-0.3 2,-0.0 -1,-0.0 -0.951 17.8 170.7-132.2 153.0 -3.6 -17.0 -1.2 84 84 A A - 0 0 68 -2,-0.3 2,-0.4 2,-0.0 0, 0.0 -0.898 41.1-106.3-149.2 179.0 -3.3 -20.3 0.7 85 85 A R - 0 0 210 -2,-0.3 -2,-0.0 3,-0.0 0, 0.0 -0.461 44.5-179.5-111.0 61.8 -0.9 -23.3 1.2 86 86 A E + 0 0 169 -2,-0.4 -2,-0.0 1,-0.0 0, 0.0 0.015 53.5 57.8 -52.2 169.3 -2.7 -26.0 -0.7 87 87 A G 0 0 78 1,-0.2 -1,-0.0 0, 0.0 0, 0.0 0.967 360.0 360.0 69.5 83.1 -1.1 -29.5 -0.7 88 88 A A 0 0 170 0, 0.0 -1,-0.2 0, 0.0 -3,-0.0 -0.817 360.0 360.0-167.7 360.0 -0.8 -30.5 3.0