==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 27-JUN-97 1ENV . COMPND 2 MOLECULE: HIV-1 ENVELOPE PROTEIN CHIMERA CONSISTING OF A FR . SOURCE 2 FRAGMENT: 30 - 154; . AUTHOR W.WEISSENHORN,A.DESSEN,S.C.HARRISON,J.J.SKEHEL,D.C.WILEY . 115 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 10663.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 122106.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 13.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 106 92.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A Q > 0 0 190 0, 0.0 4,-2.8 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -20.9 32.0 8.8 141.0 2 2 A I H > + 0 0 119 2,-0.2 4,-1.9 1,-0.2 5,-0.2 0.954 360.0 50.1 -63.1 -43.7 29.8 11.7 141.6 3 3 A E H > S+ 0 0 159 1,-0.2 4,-0.9 2,-0.2 3,-0.3 0.944 113.2 43.5 -53.1 -57.6 27.2 9.0 141.8 4 4 A D H > S+ 0 0 110 1,-0.2 4,-2.4 2,-0.2 3,-0.4 0.847 108.3 58.3 -59.0 -41.5 29.2 6.9 144.3 5 5 A K H X S+ 0 0 134 -4,-2.8 4,-3.1 1,-0.2 -1,-0.2 0.897 103.2 52.7 -60.3 -38.9 30.2 9.9 146.4 6 6 A I H X S+ 0 0 87 -4,-1.9 4,-1.7 -3,-0.3 -1,-0.2 0.781 107.8 53.0 -68.5 -25.1 26.5 10.7 147.1 7 7 A E H X S+ 0 0 58 -4,-0.9 4,-1.8 -3,-0.4 -2,-0.2 0.958 112.4 43.6 -72.2 -49.1 26.1 7.1 148.2 8 8 A E H X S+ 0 0 117 -4,-2.4 4,-2.6 2,-0.2 3,-0.4 0.948 112.3 51.9 -58.8 -54.9 28.9 7.4 150.7 9 9 A I H X S+ 0 0 95 -4,-3.1 4,-2.8 1,-0.3 5,-0.2 0.935 110.6 49.2 -47.9 -51.6 27.8 10.8 152.0 10 10 A L H X S+ 0 0 110 -4,-1.7 4,-1.5 1,-0.2 -1,-0.3 0.825 110.0 51.6 -59.1 -35.5 24.3 9.5 152.6 11 11 A S H X S+ 0 0 48 -4,-1.8 4,-2.3 -3,-0.4 -1,-0.2 0.927 111.9 45.3 -68.6 -45.8 25.7 6.4 154.5 12 12 A K H X S+ 0 0 149 -4,-2.6 4,-2.7 1,-0.2 5,-0.4 0.947 110.5 54.0 -62.6 -46.8 27.9 8.6 156.8 13 13 A I H X S+ 0 0 85 -4,-2.8 4,-1.7 -5,-0.2 -1,-0.2 0.853 110.7 47.9 -57.9 -34.2 25.0 11.0 157.4 14 14 A Y H X S+ 0 0 41 -4,-1.5 4,-1.5 -5,-0.2 -1,-0.2 0.966 112.3 45.6 -71.8 -51.6 22.8 8.1 158.5 15 15 A H H X S+ 0 0 123 -4,-2.3 4,-1.3 1,-0.2 -2,-0.2 0.862 118.6 43.0 -61.3 -37.5 25.3 6.4 160.8 16 16 A I H X S+ 0 0 101 -4,-2.7 4,-1.8 2,-0.2 -1,-0.2 0.852 106.3 61.1 -76.5 -32.9 26.2 9.7 162.4 17 17 A E H X S+ 0 0 129 -4,-1.7 4,-1.4 -5,-0.4 -2,-0.2 0.829 104.3 53.2 -59.7 -28.6 22.5 10.7 162.5 18 18 A N H X S+ 0 0 93 -4,-1.5 4,-2.6 2,-0.2 -1,-0.2 0.936 100.4 58.9 -69.9 -47.7 22.3 7.6 164.7 19 19 A E H X S+ 0 0 96 -4,-1.3 4,-3.1 1,-0.2 5,-0.2 0.889 103.7 52.7 -46.9 -50.0 25.0 8.8 167.1 20 20 A I H X S+ 0 0 105 -4,-1.8 4,-2.7 1,-0.2 5,-0.2 0.956 109.1 46.9 -55.2 -52.7 23.0 12.0 167.8 21 21 A A H X S+ 0 0 59 -4,-1.4 4,-1.3 1,-0.2 -1,-0.2 0.905 113.5 51.2 -58.4 -41.1 19.9 10.0 168.8 22 22 A R H >X S+ 0 0 128 -4,-2.6 4,-2.2 1,-0.2 3,-0.9 0.976 110.7 47.1 -54.3 -57.1 22.1 7.7 170.9 23 23 A I H 3X S+ 0 0 97 -4,-3.1 4,-2.5 1,-0.3 -2,-0.2 0.862 110.3 53.2 -54.9 -41.5 23.7 10.7 172.7 24 24 A K H 3X S+ 0 0 145 -4,-2.7 4,-1.0 -5,-0.2 -1,-0.3 0.745 107.7 51.4 -68.8 -25.1 20.3 12.3 173.3 25 25 A K H XX S+ 0 0 146 -4,-1.3 4,-2.1 -3,-0.9 3,-0.7 0.968 112.0 44.9 -73.8 -55.9 19.0 9.1 174.9 26 26 A L H 3X S+ 0 0 116 -4,-2.2 4,-2.6 1,-0.3 5,-0.2 0.905 111.6 54.0 -52.6 -44.9 21.9 8.8 177.3 27 27 A I H 3X S+ 0 0 104 -4,-2.5 4,-0.8 -5,-0.2 -1,-0.3 0.840 105.4 54.6 -60.4 -31.7 21.6 12.6 178.0 28 28 A G H XX S+ 0 0 37 -4,-1.0 3,-1.1 -3,-0.7 4,-1.1 0.982 110.2 45.5 -64.5 -54.8 17.9 11.9 178.9 29 29 A E H >X S+ 0 0 126 -4,-2.1 4,-1.5 1,-0.3 3,-1.1 0.933 108.8 54.9 -50.2 -57.3 18.9 9.2 181.5 30 30 A A H 3X S+ 0 0 49 -4,-2.6 4,-1.3 1,-0.3 -1,-0.3 0.688 98.3 64.0 -53.5 -23.7 21.7 11.3 183.0 31 31 A R H X S+ 0 0 126 -4,-2.7 4,-2.1 1,-0.2 3,-0.9 0.945 108.6 57.2 -66.9 -45.6 17.5 15.8 195.9 40 40 A Q H 3X S+ 0 0 104 -4,-2.1 4,-2.6 1,-0.3 -1,-0.2 0.835 105.8 51.6 -52.1 -37.3 19.8 13.5 197.9 41 41 A Q H 3X S+ 0 0 88 -4,-1.3 4,-1.6 2,-0.2 -1,-0.3 0.790 105.1 53.1 -73.9 -29.6 21.8 16.5 198.9 42 42 A N H X S+ 0 0 58 -4,-2.2 4,-1.5 2,-0.2 3,-0.7 0.978 112.0 46.4 -62.8 -56.2 20.4 20.5 210.3 50 50 A A H 3X S+ 0 0 56 -4,-2.3 4,-2.5 1,-0.3 -2,-0.2 0.882 109.1 55.4 -54.0 -42.0 18.3 18.2 212.6 51 51 A Q H 3X S+ 0 0 132 -4,-2.9 4,-2.7 1,-0.2 -1,-0.3 0.847 104.4 54.8 -64.0 -29.5 21.5 16.7 214.0 52 52 A Q H < S+ 0 0 184 -4,-1.8 3,-1.2 -3,-0.3 -2,-0.2 0.963 106.8 53.5 -65.5 -49.4 29.0 23.4 247.5 75 75 A Y H 3< S+ 0 0 93 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.2 0.903 114.2 44.3 -49.3 -43.5 26.3 22.2 249.9 76 76 A L H 3< 0 0 147 -4,-1.8 -1,-0.3 -5,-0.3 -2,-0.2 0.683 360.0 360.0 -72.2 -20.4 28.8 19.4 250.8 77 77 A K << 0 0 123 -3,-1.2 -3,-0.1 -4,-0.9 -2,-0.1 0.758 360.0 360.0 -90.7 360.0 32.0 21.7 251.1 78 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 79 117 A W >> 0 0 160 0, 0.0 4,-1.2 0, 0.0 3,-1.0 0.000 360.0 360.0 360.0 -41.0 35.7 24.9 232.4 80 118 A M H 3> + 0 0 126 1,-0.2 4,-1.8 2,-0.2 5,-0.1 0.763 360.0 60.6 -43.0 -38.1 35.6 28.2 230.4 81 119 A E H 3> S+ 0 0 102 1,-0.2 4,-2.8 2,-0.2 3,-0.4 0.966 103.2 51.4 -58.7 -48.8 37.9 26.7 227.5 82 120 A W H <> S+ 0 0 74 -3,-1.0 4,-2.0 1,-0.3 -1,-0.2 0.866 108.3 52.3 -54.6 -38.7 35.2 24.0 226.8 83 121 A D H X S+ 0 0 41 -4,-1.2 4,-1.7 2,-0.2 -1,-0.3 0.856 110.7 47.9 -68.1 -33.4 32.7 26.8 226.6 84 122 A R H X S+ 0 0 137 -4,-1.8 4,-2.8 -3,-0.4 3,-0.2 0.979 111.8 46.2 -69.4 -59.7 34.8 28.7 224.1 85 123 A E H X S+ 0 0 99 -4,-2.8 4,-2.3 1,-0.2 5,-0.3 0.873 113.5 51.6 -53.3 -36.1 35.5 25.7 221.8 86 124 A I H X S+ 0 0 34 -4,-2.0 4,-1.5 -5,-0.3 -1,-0.2 0.912 110.7 47.0 -68.3 -39.2 31.8 24.9 221.9 87 125 A N H X S+ 0 0 102 -4,-1.7 4,-2.1 -3,-0.2 -2,-0.2 0.912 114.3 48.4 -67.0 -42.3 30.8 28.4 221.0 88 126 A N H X S+ 0 0 105 -4,-2.8 4,-2.2 2,-0.2 3,-0.4 0.981 113.0 43.9 -62.8 -61.7 33.3 28.5 218.1 89 127 A Y H X S+ 0 0 152 -4,-2.3 4,-2.2 1,-0.3 -1,-0.2 0.816 111.9 56.3 -54.5 -32.6 32.4 25.2 216.5 90 128 A T H X S+ 0 0 30 -4,-1.5 4,-1.1 -5,-0.3 -1,-0.3 0.932 107.0 48.9 -66.2 -42.9 28.8 26.1 217.0 91 129 A S H >X S+ 0 0 77 -4,-2.1 4,-1.4 -3,-0.4 3,-0.6 0.948 111.5 49.6 -58.3 -50.3 29.3 29.4 215.0 92 130 A L H >X S+ 0 0 93 -4,-2.2 4,-2.5 1,-0.3 3,-1.0 0.936 107.3 52.5 -54.4 -56.8 31.1 27.5 212.1 93 131 A I H 3X S+ 0 0 52 -4,-2.2 4,-1.4 1,-0.3 -1,-0.3 0.750 108.3 53.7 -54.6 -28.0 28.5 24.8 211.7 94 132 A H H X S+ 0 0 84 -4,-2.2 4,-2.0 1,-0.2 3,-1.4 0.989 111.8 50.4 -62.4 -57.6 22.3 28.9 199.6 103 141 A Q H 3X S+ 0 0 105 -4,-3.0 4,-2.1 1,-0.3 -1,-0.2 0.819 108.6 55.2 -49.6 -34.2 24.2 26.4 197.4 104 142 A Q H 3X S+ 0 0 15 -4,-1.3 4,-1.3 -5,-0.2 -1,-0.3 0.813 105.5 50.2 -72.5 -32.3 21.1 24.1 197.6 105 143 A E H < S+ 0 0 99 -4,-1.4 3,-1.1 1,-0.2 4,-0.4 0.913 107.6 53.3 -73.1 -42.1 15.0 23.7 187.1 113 151 A E H >< S+ 0 0 120 -4,-2.8 3,-1.2 1,-0.2 -2,-0.2 0.840 98.7 66.9 -59.1 -34.0 16.3 25.9 184.2 114 152 A L H 3< S+ 0 0 123 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.778 80.4 75.0 -61.1 -30.1 17.7 22.8 182.5 115 153 A D T << 0 0 137 -3,-1.1 -1,-0.2 -4,-0.5 -2,-0.2 0.794 360.0 360.0 -66.0 -24.6 14.2 21.3 181.8 116 154 A K < 0 0 125 -3,-1.2 -2,-0.2 -4,-0.4 -1,-0.2 0.929 360.0 360.0 -61.1 360.0 13.8 24.0 178.9