==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ENDOCYTOSIS 28-MAR-07 2ENM . COMPND 2 MOLECULE: SORTING NEXIN-9; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR M.WAKABAYASHI,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA, . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5876.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 40 51.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 27.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 10.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 5.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 138 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -51.5 4.8 30.8 4.2 2 2 A S - 0 0 112 2,-0.0 2,-0.4 0, 0.0 3,-0.1 -0.557 360.0-135.9-109.8 175.8 3.3 27.5 3.1 3 3 A S + 0 0 118 -2,-0.2 0, 0.0 1,-0.2 0, 0.0 -0.982 63.4 17.0-139.1 124.9 1.4 26.4 0.0 4 4 A G - 0 0 64 -2,-0.4 -1,-0.2 3,-0.1 4,-0.0 0.358 57.7-131.9 91.4 135.5 -1.7 24.2 -0.1 5 5 A S S S+ 0 0 89 2,-0.1 -2,-0.0 -3,-0.1 65,-0.0 0.952 102.9 20.5 -83.2 -59.4 -4.1 23.2 2.6 6 6 A S S S- 0 0 75 1,-0.1 64,-0.3 63,-0.1 2,-0.1 0.945 108.1-128.9 -75.9 -51.6 -4.4 19.5 2.2 7 7 A G - 0 0 39 62,-0.1 -3,-0.1 1,-0.1 -1,-0.1 -0.160 9.6-116.9 114.2 151.0 -1.2 18.9 0.3 8 8 A M S S+ 0 0 185 1,-0.1 2,-1.8 -2,-0.1 -1,-0.1 0.742 90.8 90.6 -91.5 -28.2 -0.1 17.2 -2.9 9 9 A A - 0 0 82 27,-0.0 2,-0.3 -3,-0.0 -1,-0.1 -0.516 64.9-172.4 -72.5 86.5 2.1 14.7 -1.2 10 10 A T E -A 37 0A 33 -2,-1.8 27,-2.2 27,-0.5 2,-0.3 -0.627 2.7-164.5 -84.8 139.3 -0.4 11.9 -0.7 11 11 A K E -AB 36 67A 100 56,-0.6 56,-2.7 -2,-0.3 2,-0.4 -0.896 5.8-165.4-123.8 153.5 0.6 8.8 1.3 12 12 A A E -AB 35 66A 1 23,-1.0 23,-1.1 -2,-0.3 2,-0.4 -0.999 12.0-141.7-141.6 136.8 -1.0 5.4 1.7 13 13 A R E -AB 34 65A 95 52,-1.1 52,-1.6 -2,-0.4 2,-0.4 -0.821 22.5-123.3-100.7 134.5 -0.4 2.6 4.3 14 14 A V E - B 0 64A 0 19,-1.4 18,-2.3 -2,-0.4 50,-0.2 -0.621 22.0-174.6 -78.2 124.4 -0.4 -1.1 3.2 15 15 A M S S+ 0 0 48 48,-2.3 2,-0.4 -2,-0.4 49,-0.2 0.832 73.6 27.0 -85.4 -36.6 -3.0 -3.1 5.1 16 16 A Y S S- 0 0 146 47,-1.1 2,-0.6 14,-0.1 -1,-0.2 -0.985 90.7-103.6-131.5 140.2 -1.9 -6.5 3.7 17 17 A D - 0 0 109 -2,-0.4 2,-0.3 13,-0.1 13,-0.2 -0.452 45.4-170.1 -63.1 109.7 1.4 -7.7 2.3 18 18 A F - 0 0 31 -2,-0.6 11,-1.3 11,-0.4 2,-0.4 -0.809 8.7-154.8-106.4 146.0 1.0 -7.6 -1.5 19 19 A A - 0 0 74 -2,-0.3 2,-0.5 9,-0.2 9,-0.1 -0.962 4.9-146.9-122.9 137.2 3.5 -9.1 -4.0 20 20 A A - 0 0 17 -2,-0.4 8,-0.1 6,-0.1 3,-0.1 -0.874 25.4-113.8-105.5 131.5 3.9 -8.1 -7.6 21 21 A E > - 0 0 142 -2,-0.5 3,-0.8 1,-0.1 5,-0.3 -0.163 42.6 -90.8 -58.3 152.4 4.9 -10.6 -10.3 22 22 A P T 3 S+ 0 0 128 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.494 109.1 11.4 -69.7 126.8 8.3 -10.2 -12.0 23 23 A G T 3 S+ 0 0 92 -2,-0.3 2,-0.3 1,-0.3 -2,-0.1 0.894 101.6 126.0 74.3 41.0 8.3 -8.1 -15.1 24 24 A N S < S- 0 0 52 -3,-0.8 -1,-0.3 2,-0.3 -4,-0.0 -0.808 75.1-109.8-126.5 167.8 4.8 -6.7 -14.6 25 25 A N S S+ 0 0 135 -2,-0.3 33,-2.6 32,-0.1 2,-0.3 0.016 89.7 96.6 -85.6 29.2 3.1 -3.3 -14.4 26 26 A E B -c 58 0A 50 -5,-0.3 2,-0.3 31,-0.3 -2,-0.3 -0.834 67.1-132.5-119.0 157.3 2.6 -3.9 -10.6 27 27 A L - 0 0 11 31,-1.9 2,-0.5 -2,-0.3 -6,-0.1 -0.829 15.3-129.0-110.3 148.2 4.5 -2.8 -7.5 28 28 A T + 0 0 83 -2,-0.3 2,-0.3 -9,-0.1 -9,-0.2 -0.842 36.1 162.8 -99.5 125.2 5.5 -5.0 -4.6 29 29 A V - 0 0 6 -11,-1.3 -11,-0.4 -2,-0.5 2,-0.3 -0.815 23.4-139.5-133.0 172.9 4.7 -3.7 -1.1 30 30 A T > - 0 0 68 -2,-0.3 3,-1.7 -13,-0.2 -16,-0.3 -0.946 36.1 -83.2-135.5 156.2 4.4 -5.0 2.5 31 31 A E T 3 S+ 0 0 99 -2,-0.3 -16,-0.2 1,-0.3 3,-0.1 -0.332 116.6 14.2 -59.0 130.8 2.0 -4.5 5.4 32 32 A G T 3 S+ 0 0 40 -18,-2.3 -1,-0.3 1,-0.3 2,-0.2 0.099 97.4 124.3 91.0 -23.6 2.9 -1.4 7.4 33 33 A E < - 0 0 98 -3,-1.7 -19,-1.4 -20,-0.1 2,-0.3 -0.521 49.2-150.6 -74.0 134.6 5.2 -0.1 4.6 34 34 A I E +A 13 0A 56 -2,-0.2 2,-0.2 -21,-0.2 -21,-0.2 -0.817 17.0 176.4-108.4 147.7 4.4 3.3 3.3 35 35 A I E -A 12 0A 16 -23,-1.1 -23,-1.0 -2,-0.3 2,-0.5 -0.816 34.5 -89.5-138.4 177.9 5.0 4.7 -0.2 36 36 A T E -AD 11 50A 67 14,-1.4 14,-1.9 -2,-0.2 2,-0.5 -0.825 34.1-140.8 -98.2 127.3 4.4 7.8 -2.3 37 37 A V E +AD 10 49A 11 -27,-2.2 -27,-0.5 -2,-0.5 12,-0.2 -0.736 32.4 157.7 -89.5 128.3 1.1 8.1 -4.3 38 38 A T E S+ 0 0 68 10,-2.5 11,-0.2 -2,-0.5 -1,-0.2 0.734 75.3 24.2-113.7 -45.7 1.3 9.5 -7.8 39 39 A N E + D 0 48A 59 9,-1.9 9,-2.1 1,-0.1 3,-0.3 -0.711 59.2 162.7-127.9 81.0 -1.7 8.3 -9.6 40 40 A P S S+ 0 0 43 0, 0.0 2,-0.5 0, 0.0 3,-0.2 0.686 76.2 55.1 -69.7 -18.5 -4.5 7.4 -7.1 41 41 A N + 0 0 136 1,-0.2 6,-0.2 -3,-0.1 0, 0.0 -0.722 60.8 141.8-119.4 80.5 -7.0 7.5 -9.9 42 42 A V - 0 0 61 4,-1.8 -1,-0.2 -2,-0.5 5,-0.1 0.952 69.4 -81.5 -81.8 -57.7 -5.9 5.1 -12.6 43 43 A G S S+ 0 0 67 3,-0.4 4,-0.1 -3,-0.2 -2,-0.1 0.083 104.6 26.6 147.0 96.3 -9.1 3.6 -13.7 44 44 A G S S- 0 0 80 2,-0.1 -3,-0.0 1,-0.0 0, 0.0 0.206 129.1 -53.0 121.1 -13.4 -11.1 0.7 -12.2 45 45 A G S S+ 0 0 34 1,-0.3 16,-1.4 -5,-0.1 17,-0.4 0.683 101.1 118.5 116.3 33.2 -10.0 1.1 -8.6 46 46 A W E - E 0 60A 92 14,-0.2 -4,-1.8 15,-0.1 -3,-0.4 -0.821 41.6-155.2-125.3 165.1 -6.2 1.1 -8.8 47 47 A L E - E 0 59A 0 12,-2.2 12,-2.7 -2,-0.3 2,-0.6 -0.983 13.8-131.0-141.2 151.6 -3.3 3.5 -7.9 48 48 A E E +DE 39 58A 61 -9,-2.1 -10,-2.5 -2,-0.3 -9,-1.9 -0.906 30.0 176.1-107.7 121.4 0.2 4.0 -9.0 49 49 A G E -DE 37 57A 0 8,-1.9 8,-1.9 -2,-0.6 2,-0.3 -0.892 19.8-137.8-124.6 155.0 2.9 4.4 -6.4 50 50 A K E -DE 36 56A 87 -14,-1.9 -14,-1.4 -2,-0.3 6,-0.2 -0.840 14.3-147.4-111.6 148.4 6.7 4.8 -6.4 51 51 A N > - 0 0 27 4,-2.0 3,-2.1 -2,-0.3 -16,-0.1 -0.519 37.3 -93.0-105.7 175.1 9.3 3.1 -4.2 52 52 A N T 3 S+ 0 0 165 1,-0.3 -1,-0.0 -2,-0.2 -17,-0.0 0.841 124.9 62.5 -55.5 -34.5 12.6 4.2 -2.8 53 53 A K T 3 S- 0 0 154 1,-0.1 -1,-0.3 2,-0.1 3,-0.1 0.715 117.0-116.6 -64.7 -19.9 14.3 2.6 -5.8 54 54 A G < + 0 0 33 -3,-2.1 2,-0.2 1,-0.3 -2,-0.1 0.424 69.9 137.1 97.0 0.0 12.3 5.1 -7.9 55 55 A E - 0 0 130 -5,-0.0 -4,-2.0 1,-0.0 2,-0.4 -0.535 41.3-148.4 -81.8 146.7 10.3 2.4 -9.7 56 56 A Q E + E 0 50A 102 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.948 22.8 162.4-119.6 136.1 6.6 2.9 -10.3 57 57 A G E - E 0 49A 2 -8,-1.9 -8,-1.9 -2,-0.4 -31,-0.3 -0.961 39.0 -95.5-147.3 164.0 3.9 0.1 -10.4 58 58 A L E -cE 26 48A 46 -33,-2.6 -31,-1.9 -2,-0.3 -10,-0.2 -0.603 38.4-174.3 -83.3 140.4 0.2 -0.4 -10.1 59 59 A V E - E 0 47A 0 -12,-2.7 -12,-2.2 -2,-0.3 2,-0.4 -0.998 29.2-110.6-138.9 139.0 -1.3 -1.4 -6.8 60 60 A P E >> - E 0 46A 4 0, 0.0 3,-2.4 0, 0.0 4,-1.2 -0.520 16.7-147.3 -69.8 119.4 -4.8 -2.5 -5.7 61 61 A T T 34 S+ 0 0 41 -16,-1.4 -15,-0.1 -2,-0.4 5,-0.1 0.723 97.8 69.1 -58.3 -20.7 -6.5 0.2 -3.6 62 62 A D T 34 S+ 0 0 115 -17,-0.4 -1,-0.3 1,-0.2 3,-0.1 0.728 101.0 46.0 -70.4 -21.8 -8.2 -2.6 -1.8 63 63 A Y T <4 S+ 0 0 90 -3,-2.4 -48,-2.3 1,-0.2 -47,-1.1 0.795 119.5 38.7 -89.3 -33.3 -4.8 -3.7 -0.4 64 64 A V E < -B 14 0A 4 -4,-1.2 2,-0.7 -50,-0.2 -50,-0.2 -0.969 69.2-150.7-123.6 135.5 -3.8 -0.2 0.7 65 65 A E E -B 13 0A 120 -52,-1.6 -52,-1.1 -2,-0.4 -3,-0.1 -0.886 24.9-126.1-108.2 106.6 -6.0 2.6 2.2 66 66 A I E -B 12 0A 55 -2,-0.7 -54,-0.3 -54,-0.2 -56,-0.0 -0.128 25.2-132.1 -48.1 139.5 -4.8 6.1 1.3 67 67 A L E -B 11 0A 76 -56,-2.7 -56,-0.6 1,-0.1 -1,-0.1 -0.768 16.7-116.4-101.2 144.1 -4.3 8.2 4.4 68 68 A P - 0 0 118 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.138 27.1-125.7 -69.7 169.1 -5.6 11.8 4.8 69 69 A N - 0 0 51 1,-0.1 2,-0.9 -62,-0.1 -62,-0.1 -0.551 45.5 -60.3-111.1 177.6 -3.4 14.9 5.3 70 70 A D - 0 0 128 -64,-0.3 3,-0.1 -2,-0.2 2,-0.1 -0.426 62.1-153.8 -61.6 99.6 -3.3 17.7 7.8 71 71 A G - 0 0 49 -2,-0.9 -65,-0.1 1,-0.2 -1,-0.0 -0.419 40.9 -62.4 -77.6 153.1 -6.7 19.2 7.5 72 72 A K - 0 0 171 -2,-0.1 -1,-0.2 1,-0.1 -66,-0.0 -0.021 65.6-120.3 -34.8 112.6 -7.5 22.8 8.3 73 73 A D - 0 0 116 -3,-0.1 -1,-0.1 1,-0.1 2,-0.0 -0.267 29.7-103.2 -61.6 145.6 -6.6 23.0 12.0 74 74 A P - 0 0 107 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 -0.311 39.3 -99.7 -69.7 152.9 -9.5 24.1 14.4 75 75 A F - 0 0 190 1,-0.2 2,-0.0 2,-0.1 0, 0.0 -0.049 68.9 -47.7 -64.9 172.9 -9.7 27.6 15.8 76 76 A S 0 0 113 1,-0.1 -1,-0.2 0, 0.0 0, 0.0 -0.206 360.0 360.0 -46.8 111.9 -8.5 28.4 19.4 77 77 A C 0 0 171 -3,-0.2 -1,-0.1 -2,-0.0 -2,-0.1 0.998 360.0 360.0 -68.5 360.0 -10.1 25.7 21.5