==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 28-MAR-07 2ENS . COMPND 2 MOLECULE: ADVANCED GLYCOSYLATION END PRODUCT-SPECIFIC . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.WAKABAYASHI,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA, . 96 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6487.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 44.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 22.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 13.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 2 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 138 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0-168.7 -7.8 0.5 17.7 2 2 A S - 0 0 91 1,-0.1 0, 0.0 3,-0.0 0, 0.0 -0.955 360.0 -99.5-172.9 155.9 -10.1 3.1 19.2 3 3 A S S S- 0 0 133 -2,-0.3 -1,-0.1 1,-0.1 0, 0.0 0.908 92.5 -62.0 -48.1 -49.1 -13.3 3.5 21.2 4 4 A G S S+ 0 0 67 -3,-0.1 2,-0.3 2,-0.0 -1,-0.1 0.250 73.0 164.7 159.5 58.3 -15.2 4.3 18.0 5 5 A S - 0 0 106 2,-0.0 2,-0.5 0, 0.0 -3,-0.0 -0.651 23.1-146.7 -93.4 149.3 -14.1 7.4 16.1 6 6 A S + 0 0 120 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.965 28.0 153.7-120.2 125.9 -15.1 8.1 12.5 7 7 A G - 0 0 64 -2,-0.5 2,-0.2 2,-0.0 -2,-0.0 -0.859 28.7-129.5-141.0 175.6 -12.8 9.9 10.0 8 8 A L - 0 0 161 -2,-0.3 2,-0.3 0, 0.0 -2,-0.0 -0.732 10.4-154.2-123.5 173.1 -12.0 10.3 6.3 9 9 A E - 0 0 87 -2,-0.2 77,-0.0 1,-0.1 78,-0.0 -0.965 14.9-152.7-153.4 132.8 -8.9 10.2 4.1 10 10 A E S S+ 0 0 128 -2,-0.3 -1,-0.1 2,-0.0 26,-0.1 0.935 80.6 78.0 -68.9 -48.0 -8.0 11.8 0.8 11 11 A V - 0 0 2 23,-0.1 2,-0.5 1,-0.1 76,-0.3 -0.406 65.2-161.1 -66.0 135.9 -5.5 9.1 -0.2 12 12 A Q - 0 0 138 -2,-0.1 21,-0.1 74,-0.1 -1,-0.1 -0.715 8.0-157.1-122.0 80.2 -7.1 5.9 -1.4 13 13 A L - 0 0 31 -2,-0.5 2,-0.5 61,-0.1 19,-0.2 -0.330 7.3-159.0 -58.3 129.4 -4.5 3.1 -1.2 14 14 A V E -A 31 0A 52 17,-3.3 17,-3.0 -2,-0.1 2,-0.3 -0.946 10.6-176.2-119.0 114.7 -5.4 0.3 -3.6 15 15 A V E -A 30 0A 16 -2,-0.5 15,-0.2 15,-0.2 5,-0.0 -0.719 26.0-104.1-107.2 158.3 -3.9 -3.2 -3.0 16 16 A E E S+A 29 0A 110 13,-0.7 13,-1.0 -2,-0.3 2,-0.2 -0.972 110.5 26.9-134.9 120.3 -4.2 -6.4 -5.1 17 17 A P S > S- 0 0 54 0, 0.0 3,-1.0 0, 0.0 -1,-0.1 0.571 92.7-138.1 -69.7 164.7 -5.9 -8.4 -4.2 18 18 A E T 3 S+ 0 0 175 1,-0.3 -3,-0.2 -2,-0.2 -2,-0.1 0.928 100.4 65.1 -54.4 -49.3 -8.2 -5.9 -2.4 19 19 A G T 3 S- 0 0 76 1,-0.1 -1,-0.3 2,-0.1 3,-0.1 0.824 108.9-125.1 -43.4 -37.3 -8.6 -8.2 0.6 20 20 A G S < S+ 0 0 4 -3,-1.0 72,-1.1 1,-0.3 2,-0.3 0.812 70.7 102.6 92.2 35.1 -4.9 -7.8 1.2 21 21 A A E +c 92 0B 23 70,-0.2 -1,-0.3 -4,-0.1 2,-0.3 -0.990 38.6 173.4-147.8 153.6 -3.8 -11.4 1.2 22 22 A V E -c 93 0B 14 70,-2.0 72,-1.0 -2,-0.3 6,-0.1 -0.988 37.2 -85.1-157.0 159.3 -2.1 -13.9 -1.1 23 23 A A > - 0 0 49 -2,-0.3 2,-1.9 70,-0.2 3,-1.4 -0.146 60.1 -83.0 -63.5 161.8 -0.8 -17.5 -1.2 24 24 A P T 3 S+ 0 0 86 0, 0.0 41,-0.2 0, 0.0 -1,-0.1 -0.466 122.4 23.3 -69.8 83.3 2.8 -18.3 -0.0 25 25 A G T 3 S+ 0 0 53 -2,-1.9 38,-0.2 39,-0.5 40,-0.1 0.552 95.8 116.0 131.6 26.0 4.7 -17.4 -3.2 26 26 A G < - 0 0 21 -3,-1.4 38,-1.8 38,-0.3 37,-1.4 -0.077 59.7-105.6-102.1-156.4 2.4 -14.9 -5.1 27 27 A T E - B 0 62A 79 35,-0.3 2,-0.3 36,-0.2 -4,-0.1 -0.981 24.5-166.0-143.1 127.5 2.7 -11.3 -6.1 28 28 A V E - B 0 61A 2 33,-0.8 33,-2.9 -2,-0.4 2,-0.5 -0.815 8.3-149.3-112.6 152.8 1.0 -8.2 -4.7 29 29 A T E -AB 16 60A 42 -13,-1.0 2,-0.9 -2,-0.3 -13,-0.7 -0.969 1.8-159.8-126.2 118.8 0.7 -4.7 -6.2 30 30 A L E -AB 15 59A 1 29,-2.7 29,-1.5 -2,-0.5 2,-0.6 -0.812 14.5-176.7-100.0 99.0 0.4 -1.6 -4.0 31 31 A T E +AB 14 58A 29 -17,-3.0 -17,-3.3 -2,-0.9 27,-0.2 -0.854 17.0 162.0-100.2 120.6 -1.1 1.2 -6.0 32 32 A a + 0 0 2 25,-1.1 2,-1.2 -2,-0.6 26,-0.1 -0.131 16.5 150.7-126.5 35.7 -1.3 4.6 -4.3 33 33 A E - 0 0 131 24,-0.4 6,-0.1 -21,-0.1 -2,-0.1 -0.581 43.5-136.2 -74.3 98.1 -1.8 6.9 -7.3 34 34 A V - 0 0 13 -2,-1.2 -23,-0.1 1,-0.1 -2,-0.1 -0.238 1.8-142.9 -56.1 138.2 -3.8 9.7 -5.9 35 35 A P S S+ 0 0 109 0, 0.0 -1,-0.1 0, 0.0 -24,-0.1 0.910 100.7 43.5 -69.8 -44.5 -6.7 10.8 -8.2 36 36 A A S S+ 0 0 75 -26,-0.1 -2,-0.1 1,-0.1 -3,-0.0 0.872 114.1 56.6 -69.6 -38.1 -6.4 14.6 -7.4 37 37 A Q - 0 0 45 1,-0.2 -1,-0.1 41,-0.0 41,-0.0 -0.853 65.2-163.8-101.8 126.0 -2.6 14.4 -7.7 38 38 A P S S+ 0 0 123 0, 0.0 -1,-0.2 0, 0.0 -2,-0.0 0.948 90.0 5.9 -69.7 -51.4 -1.0 13.1 -10.9 39 39 A S S S+ 0 0 109 -6,-0.1 -6,-0.1 17,-0.0 3,-0.0 -0.478 88.4 163.5-135.0 63.1 2.5 12.5 -9.6 40 40 A P - 0 0 21 0, 0.0 2,-1.1 0, 0.0 38,-0.1 0.039 53.4 -74.3 -69.7-176.6 2.3 13.2 -5.8 41 41 A Q - 0 0 95 15,-0.0 36,-0.8 16,-0.0 2,-0.3 -0.715 54.2-167.6 -87.9 96.5 4.9 12.1 -3.2 42 42 A I + 0 0 7 -2,-1.1 2,-0.3 34,-0.2 34,-0.1 -0.658 8.6 178.6 -87.0 138.7 4.4 8.3 -2.8 43 43 A H - 0 0 77 -2,-0.3 2,-0.4 32,-0.3 32,-0.1 -0.868 18.5-146.1-134.2 167.5 6.0 6.5 0.1 44 44 A W + 0 0 17 -2,-0.3 7,-1.2 30,-0.2 2,-0.4 -0.970 15.3 178.9-141.8 123.2 6.2 3.0 1.6 45 45 A M E -DE 50 73C 55 28,-1.5 28,-0.7 -2,-0.4 2,-0.5 -0.964 11.9-162.3-126.4 141.7 6.4 2.0 5.2 46 46 A K E S- E 0 72C 59 3,-2.9 26,-0.2 -2,-0.4 -2,-0.0 -0.884 80.5 -19.5-126.7 100.5 6.6 -1.5 6.8 47 47 A D S S- 0 0 137 24,-1.4 -1,-0.1 -2,-0.5 25,-0.1 0.830 129.1 -49.5 74.5 33.3 5.8 -1.6 10.5 48 48 A G S S+ 0 0 64 23,-0.3 -1,-0.2 1,-0.2 24,-0.1 0.784 118.9 109.1 76.2 27.5 6.5 2.1 11.0 49 49 A V S S- 0 0 80 0, 0.0 -3,-2.9 0, 0.0 2,-0.4 -0.997 72.8-115.4-140.8 134.2 9.8 1.9 9.2 50 50 A P B -D 45 0C 94 0, 0.0 -5,-0.2 0, 0.0 -7,-0.0 -0.524 32.9-137.7 -69.8 118.0 10.9 3.2 5.8 51 51 A L - 0 0 45 -7,-1.2 2,-2.1 -2,-0.4 -7,-0.1 -0.507 24.1-105.4 -78.5 143.9 11.8 0.3 3.4 52 52 A P S S+ 0 0 121 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.446 81.0 106.7 -69.8 79.9 14.9 0.5 1.2 53 53 A L S S- 0 0 94 -2,-2.1 -9,-0.1 -9,-0.1 -2,-0.0 -0.992 73.9 -93.2-157.1 152.2 13.1 1.2 -2.1 54 54 A P - 0 0 94 0, 0.0 2,-0.4 0, 0.0 -3,-0.0 -0.425 46.1-107.8 -69.7 137.6 12.4 4.0 -4.6 55 55 A P + 0 0 78 0, 0.0 -12,-0.1 0, 0.0 -13,-0.1 -0.520 55.3 151.3 -69.8 119.6 9.2 6.0 -4.1 56 56 A S - 0 0 44 -2,-0.4 -24,-0.1 -15,-0.1 -15,-0.0 -0.993 57.9-117.6-150.1 153.3 6.7 5.1 -6.9 57 57 A P S S+ 0 0 63 0, 0.0 -25,-1.1 0, 0.0 -24,-0.4 0.445 105.9 52.3 -69.8 1.7 2.9 5.0 -7.4 58 58 A V E +B 31 0A 64 -27,-0.2 2,-0.5 -26,-0.1 -27,-0.2 -0.930 60.9 174.4-145.1 117.0 3.3 1.3 -8.0 59 59 A L E -B 30 0A 19 -29,-1.5 -29,-2.7 -2,-0.3 2,-0.4 -0.921 10.5-167.8-127.2 106.6 5.1 -1.2 -5.7 60 60 A I E -B 29 0A 75 -2,-0.5 -31,-0.2 -31,-0.2 -2,-0.0 -0.741 8.2-163.2 -95.1 139.8 4.9 -4.9 -6.5 61 61 A L E -B 28 0A 34 -33,-2.9 -33,-0.8 -2,-0.4 3,-0.2 -0.659 16.9-176.0-122.8 75.3 6.0 -7.6 -4.1 62 62 A P E +B 27 0A 75 0, 0.0 -35,-0.3 0, 0.0 -36,-0.1 -0.311 63.3 30.8 -69.7 153.0 6.5 -10.8 -6.1 63 63 A E S S- 0 0 169 -37,-1.4 -36,-0.2 -38,-0.2 2,-0.1 0.961 82.5-172.3 63.6 53.5 7.4 -14.1 -4.4 64 64 A I + 0 0 3 -38,-1.8 -39,-0.5 -3,-0.2 -38,-0.3 -0.469 14.5 147.9 -78.4 149.3 5.6 -13.3 -1.1 65 65 A G > - 0 0 7 -41,-0.2 4,-1.0 -40,-0.1 -40,-0.1 -0.657 60.5 -53.6-151.7-152.0 5.9 -15.6 1.9 66 66 A P T 4 S+ 0 0 95 0, 0.0 3,-0.1 0, 0.0 27,-0.1 0.864 130.7 49.5 -69.7 -37.8 5.9 -15.7 5.7 67 67 A Q T 4 S+ 0 0 164 1,-0.2 -3,-0.1 3,-0.0 0, 0.0 0.777 105.4 59.1 -72.5 -27.0 8.6 -13.1 6.0 68 68 A D T 4 S+ 0 0 22 -5,-0.1 -1,-0.2 2,-0.1 23,-0.2 0.833 80.6 109.6 -70.4 -33.2 6.7 -10.8 3.7 69 69 A Q < + 0 0 80 -4,-1.0 2,-0.3 -3,-0.1 23,-0.2 -0.074 48.1 88.9 -44.4 139.7 3.7 -10.8 6.0 70 70 A G E S- F 0 91C 25 21,-1.9 21,-0.8 2,-0.0 2,-0.4 -0.964 76.2 -61.5 166.5-148.9 3.2 -7.5 7.7 71 71 A T E - F 0 90C 55 -2,-0.3 -24,-1.4 19,-0.3 -23,-0.3 -0.932 41.3-173.2-141.0 114.3 1.5 -4.1 7.3 72 72 A Y E +EF 46 89C 8 17,-3.0 17,-2.9 -2,-0.4 2,-0.3 -0.575 3.8 178.6-101.9 166.6 2.2 -1.6 4.5 73 73 A S E -E 45 0C 4 -28,-0.7 -28,-1.5 15,-0.2 2,-0.4 -0.907 21.2-135.6-168.6 138.1 1.0 1.9 4.0 74 74 A a - 0 0 0 13,-0.4 12,-3.0 -2,-0.3 2,-0.5 -0.847 17.1-158.6-102.8 132.8 1.4 4.8 1.5 75 75 A V E -G 85 0D 22 -2,-0.4 2,-0.5 10,-0.2 -32,-0.3 -0.933 3.2-153.2-114.0 130.3 2.0 8.3 2.7 76 76 A A E +G 84 0D 1 8,-2.2 8,-1.6 -2,-0.5 2,-0.4 -0.879 18.6 169.0-105.0 127.9 1.3 11.4 0.5 77 77 A T + 0 0 47 -36,-0.8 2,-0.3 -2,-0.5 3,-0.1 -0.874 20.4 122.9-142.1 105.9 3.2 14.6 1.0 78 78 A H - 0 0 49 -2,-0.4 3,-0.2 4,-0.2 -2,-0.0 -0.959 63.5 -48.6-154.0 168.5 3.1 17.5 -1.4 79 79 A S S S+ 0 0 99 -2,-0.3 -1,-0.2 1,-0.2 3,-0.1 0.108 123.6 19.1 -36.8 153.2 2.3 21.2 -1.8 80 80 A S S S+ 0 0 130 1,-0.2 2,-0.3 -3,-0.1 -1,-0.2 0.883 120.4 78.4 44.5 46.3 -1.1 22.2 -0.3 81 81 A H - 0 0 65 -3,-0.2 -1,-0.2 -4,-0.0 -4,-0.1 -0.978 62.2-144.6-167.6 169.8 -1.0 19.0 1.8 82 82 A G - 0 0 31 -2,-0.3 2,-2.0 -6,-0.1 -4,-0.2 -0.657 51.0 -51.8-133.1-170.5 0.4 17.3 4.8 83 83 A P + 0 0 120 0, 0.0 2,-0.7 0, 0.0 -6,-0.2 -0.452 63.3 171.8 -69.8 80.9 1.7 13.9 6.2 84 84 A Q E -G 76 0D 38 -2,-2.0 -8,-2.2 -8,-1.6 2,-0.6 -0.847 17.2-159.6 -99.0 115.1 -1.4 11.9 5.3 85 85 A E E -G 75 0D 121 -2,-0.7 -10,-0.2 -10,-0.2 3,-0.1 -0.838 14.8-135.0 -97.9 118.5 -0.9 8.1 5.8 86 86 A S - 0 0 1 -12,-3.0 3,-0.1 -2,-0.6 -74,-0.1 -0.218 46.2 -64.1 -66.4 158.9 -3.3 5.9 3.9 87 87 A R - 0 0 185 -76,-0.3 2,-0.5 1,-0.1 -13,-0.4 0.001 60.7-105.9 -41.6 145.9 -5.1 3.0 5.6 88 88 A A - 0 0 60 -15,-0.1 2,-0.7 -3,-0.1 -15,-0.2 -0.689 28.8-149.5 -84.0 125.1 -2.7 0.3 6.7 89 89 A V E -F 72 0C 14 -17,-2.9 -17,-3.0 -2,-0.5 2,-1.0 -0.849 3.2-153.9 -99.2 115.0 -2.7 -2.9 4.6 90 90 A S E -F 71 0C 71 -2,-0.7 2,-0.6 -19,-0.3 -19,-0.3 -0.756 10.3-156.0 -91.0 101.1 -1.9 -6.1 6.5 91 91 A I E +F 70 0C 2 -2,-1.0 -21,-1.9 -21,-0.8 2,-0.3 -0.665 24.2 164.3 -80.6 118.9 -0.5 -8.6 4.0 92 92 A S E -c 21 0B 51 -72,-1.1 -70,-2.0 -2,-0.6 2,-0.4 -0.844 38.5-100.0-130.7 167.3 -1.0 -12.1 5.2 93 93 A I E -c 22 0B 46 -2,-0.3 2,-0.3 -72,-0.2 -70,-0.2 -0.731 32.3-138.4 -91.9 135.7 -0.8 -15.6 3.7 94 94 A I - 0 0 85 -72,-1.0 -73,-0.0 -2,-0.4 -1,-0.0 -0.704 4.0-141.4 -94.1 143.8 -4.0 -17.4 2.7 95 95 A E 0 0 190 -2,-0.3 -72,-0.0 1,-0.1 -1,-0.0 -0.754 360.0 360.0-106.8 86.2 -4.6 -21.1 3.4 96 96 A P 0 0 156 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.896 360.0 360.0 -69.8 360.0 -6.5 -22.5 0.4