==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 28-MAR-07 2ENV . COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR DELTA; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7038.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 53.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 6.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 18 20.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 65 A G 0 0 107 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -60.8 16.7 10.3 -21.7 2 66 A S + 0 0 137 1,-0.1 2,-0.1 0, 0.0 3,-0.1 0.818 360.0 153.9 34.7 42.1 16.8 8.7 -18.2 3 67 A S - 0 0 96 1,-0.2 -1,-0.1 0, 0.0 0, 0.0 -0.429 49.2 -71.7 -93.3 170.3 17.1 12.3 -17.0 4 68 A G - 0 0 72 -2,-0.1 2,-0.3 -3,-0.1 -1,-0.2 0.165 47.3-133.2 -50.2 177.2 16.1 13.8 -13.7 5 69 A S - 0 0 112 -3,-0.1 2,-0.5 2,-0.1 -1,-0.1 -0.998 14.6-165.7-143.6 136.4 12.4 14.2 -12.7 6 70 A S + 0 0 130 -2,-0.3 2,-0.3 2,-0.1 -2,-0.0 -0.776 61.4 42.6-124.2 86.7 10.5 17.2 -11.2 7 71 A G S S- 0 0 71 -2,-0.5 2,-0.3 2,-0.0 -2,-0.1 -0.916 92.6 -30.3 177.2-150.4 7.1 16.1 -10.0 8 72 A M - 0 0 126 -2,-0.3 9,-1.1 9,-0.2 2,-0.4 -0.759 47.8-164.3 -99.4 144.0 5.2 13.3 -8.2 9 73 A E B -A 16 0A 133 -2,-0.3 7,-0.3 7,-0.3 6,-0.2 -0.970 31.1 -92.3-129.6 143.7 6.2 9.7 -8.2 10 74 A C - 0 0 4 5,-2.7 16,-0.3 4,-0.4 7,-0.1 -0.071 24.6-154.4 -48.5 149.0 4.3 6.5 -7.2 11 75 A R S S+ 0 0 156 14,-1.0 15,-0.1 2,-0.1 -1,-0.1 0.671 88.6 53.1-100.3 -24.0 4.8 5.4 -3.6 12 76 A V S S- 0 0 0 13,-0.2 41,-0.1 3,-0.1 14,-0.1 0.975 136.5 -3.7 -75.0 -59.6 4.0 1.7 -4.2 13 77 A C S S- 0 0 4 2,-0.2 42,-0.7 41,-0.1 43,-0.1 0.817 93.1-120.8-101.5 -45.9 6.5 1.0 -7.0 14 78 A G + 0 0 13 1,-0.4 -4,-0.4 40,-0.2 3,-0.2 -0.140 64.4 130.2 130.8 -39.6 8.0 4.4 -7.7 15 79 A D S S- 0 0 77 -6,-0.2 -5,-2.7 1,-0.1 -1,-0.4 -0.016 79.7 -60.9 -45.1 150.5 7.2 5.0 -11.3 16 80 A K B -A 9 0A 152 -7,-0.3 2,-0.3 1,-0.1 -7,-0.3 0.011 62.1-128.0 -36.2 133.6 5.6 8.3 -12.1 17 81 A A - 0 0 19 -9,-1.1 10,-0.3 -3,-0.2 -9,-0.2 -0.659 5.0-144.1 -92.5 147.2 2.3 8.7 -10.2 18 82 A S - 0 0 74 8,-1.2 2,-0.3 1,-0.3 9,-0.2 0.803 62.5 -84.3 -77.4 -30.6 -0.9 9.6 -11.9 19 83 A G E S-B 26 0B 21 7,-0.9 7,-0.6 5,-0.1 2,-0.4 -0.979 75.7 -10.4 156.1-166.1 -2.1 11.6 -8.9 20 84 A F E +B 25 0B 132 -2,-0.3 2,-0.4 5,-0.2 5,-0.2 -0.493 61.6 167.2 -66.9 118.1 -3.8 11.5 -5.5 21 85 A H E > -B 24 0B 41 3,-1.1 3,-1.0 -2,-0.4 5,-0.1 -0.918 68.4 -20.0-139.8 110.8 -5.3 8.0 -5.1 22 86 A Y T 3 S- 0 0 28 -2,-0.4 53,-1.5 1,-0.3 2,-0.3 0.821 121.7 -61.2 63.6 31.4 -6.6 6.7 -1.8 23 87 A G T 3 S+ 0 0 42 51,-0.2 2,-0.4 1,-0.1 -1,-0.3 -0.113 126.3 88.3 89.0 -38.5 -4.5 9.3 -0.0 24 88 A V E < S-B 21 0B 13 -3,-1.0 2,-1.5 -2,-0.3 -3,-1.1 -0.795 85.7-118.4 -98.6 135.9 -1.3 7.8 -1.4 25 89 A H E +B 20 0B 58 -2,-0.4 -14,-1.0 -5,-0.2 2,-0.2 -0.550 50.1 167.1 -73.4 91.5 0.1 9.0 -4.8 26 90 A A E -B 19 0B 0 -2,-1.5 -8,-1.2 -7,-0.6 -7,-0.9 -0.654 30.5-117.7-105.5 163.2 0.0 5.8 -6.7 27 91 A C > - 0 0 8 -10,-0.3 4,-2.3 -2,-0.2 5,-0.3 -0.389 33.4 -98.2 -92.8 173.3 0.4 5.1 -10.4 28 92 A E H > S+ 0 0 117 2,-0.2 4,-2.5 3,-0.2 5,-0.2 0.936 120.7 49.3 -56.0 -50.3 -2.1 3.5 -12.9 29 93 A G H > S+ 0 0 51 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.980 116.7 37.1 -53.3 -70.3 -0.5 0.1 -12.6 30 94 A C H >> S+ 0 0 7 1,-0.2 4,-2.1 2,-0.2 3,-0.6 0.949 114.7 55.6 -47.2 -61.9 -0.3 -0.2 -8.8 31 95 A K H 3X S+ 0 0 40 -4,-2.3 4,-2.0 1,-0.3 5,-0.3 0.885 105.4 53.3 -37.7 -56.4 -3.6 1.5 -8.3 32 96 A G H 3X S+ 0 0 37 -4,-2.5 4,-2.5 -5,-0.3 -1,-0.3 0.909 108.4 49.7 -48.0 -50.5 -5.3 -1.0 -10.6 33 97 A F H X S+ 0 0 115 -4,-2.0 4,-3.0 1,-0.3 3,-0.8 0.877 113.2 54.1 -41.1 -49.1 -8.6 -1.6 -6.2 36 100 A R H 3X S+ 0 0 110 -4,-2.5 4,-2.7 -5,-0.3 5,-0.4 0.933 104.6 52.5 -53.3 -51.0 -8.9 -5.0 -8.0 37 101 A T H 3<>S+ 0 0 3 -4,-2.8 5,-1.0 -3,-0.5 -1,-0.3 0.771 117.1 42.3 -57.5 -26.0 -7.8 -6.8 -4.8 38 102 A I H X<5S+ 0 0 36 -4,-1.5 3,-0.6 -3,-0.8 -2,-0.2 0.955 114.8 43.2 -84.3 -65.3 -10.6 -4.9 -3.1 39 103 A R H 3<5S+ 0 0 179 -4,-3.0 -2,-0.2 1,-0.3 -3,-0.2 0.834 126.3 38.2 -50.2 -35.1 -13.5 -5.0 -5.5 40 104 A M T 3<5S- 0 0 100 -4,-2.7 -1,-0.3 -5,-0.4 -2,-0.2 0.652 100.3-141.9 -90.2 -18.6 -12.7 -8.7 -6.0 41 105 A K T < 5 + 0 0 160 -3,-0.6 -3,-0.2 -5,-0.4 2,-0.2 0.897 34.1 177.6 57.4 42.7 -11.8 -9.2 -2.4 42 106 A L < - 0 0 59 -5,-1.0 2,-0.2 -6,-0.3 -1,-0.2 -0.533 15.1-147.2 -79.6 143.7 -8.9 -11.5 -3.4 43 107 A E - 0 0 178 -2,-0.2 2,-0.3 0, 0.0 20,-0.1 -0.623 9.6-161.0-107.1 167.6 -6.7 -13.0 -0.6 44 108 A Y - 0 0 70 -2,-0.2 2,-0.2 18,-0.1 3,-0.0 -0.987 24.7-102.4-147.8 154.4 -3.0 -13.8 -0.6 45 109 A E - 0 0 179 -2,-0.3 2,-0.3 1,-0.1 18,-0.2 -0.559 48.3 -96.7 -79.7 139.9 -0.6 -16.0 1.4 46 110 A K - 0 0 146 -2,-0.2 2,-1.1 1,-0.1 3,-0.1 -0.376 36.2-150.7 -58.2 114.7 1.7 -14.2 4.0 47 111 A C > - 0 0 23 -2,-0.3 3,-1.7 1,-0.2 4,-0.1 -0.756 15.5-176.9 -93.9 95.4 5.0 -13.7 2.2 48 112 A E T 3 S+ 0 0 139 -2,-1.1 -1,-0.2 1,-0.3 -2,-0.0 0.911 76.9 74.7 -55.7 -45.4 7.7 -13.7 4.9 49 113 A R T 3 S- 0 0 223 -3,-0.1 -1,-0.3 1,-0.1 -2,-0.1 0.770 90.9-150.1 -38.6 -30.3 10.4 -12.9 2.4 50 114 A S < - 0 0 91 -3,-1.7 -1,-0.1 2,-0.0 -2,-0.1 0.934 17.6-153.6 54.6 50.4 8.8 -9.4 2.5 51 115 A C - 0 0 51 -4,-0.1 2,-0.5 1,-0.1 -4,-0.0 0.136 10.8-115.9 -45.4 169.7 9.8 -8.7 -1.1 52 116 A K - 0 0 157 5,-0.1 2,-0.5 2,-0.0 5,-0.1 -0.933 18.0-134.1-121.2 109.3 10.4 -5.1 -2.1 53 117 A I + 0 0 6 -2,-0.5 2,-0.3 11,-0.1 5,-0.2 -0.448 39.1 168.3 -63.1 111.9 8.0 -3.7 -4.7 54 118 A Q - 0 0 52 3,-1.4 -40,-0.2 -2,-0.5 6,-0.1 -0.860 46.1-117.7-126.1 160.9 10.2 -1.9 -7.3 55 119 A K S > S+ 0 0 114 -42,-0.7 3,-0.7 -2,-0.3 4,-0.2 0.965 114.4 53.0 -59.7 -55.6 9.7 -0.4 -10.7 56 120 A K T 3 S+ 0 0 156 1,-0.3 2,-0.3 -43,-0.1 -1,-0.2 0.861 127.4 24.0 -48.3 -39.9 12.2 -2.7 -12.4 57 121 A N T 3 S+ 0 0 87 -5,-0.1 -3,-1.4 1,-0.1 3,-0.3 -0.737 73.2 139.9-132.7 85.2 10.2 -5.6 -10.9 58 122 A R S < S+ 0 0 105 -3,-0.7 2,-1.8 -2,-0.3 3,-0.5 0.902 71.7 54.6 -89.3 -51.2 6.6 -4.7 -10.1 59 123 A N S S+ 0 0 127 1,-0.2 -1,-0.2 -4,-0.2 3,-0.1 -0.227 84.9 100.0 -79.7 49.0 4.8 -7.8 -11.1 60 124 A K S S+ 0 0 156 -2,-1.8 2,-0.4 1,-0.3 -1,-0.2 0.887 83.2 17.6 -96.3 -64.7 7.1 -9.9 -8.9 61 125 A C - 0 0 20 -3,-0.5 4,-0.4 -4,-0.2 -1,-0.3 -0.888 53.9-165.2-115.0 144.6 5.1 -10.6 -5.7 62 126 A Q S > S+ 0 0 64 -2,-0.4 4,-2.4 2,-0.1 5,-0.3 0.935 87.1 44.6 -88.3 -64.4 1.4 -10.3 -5.1 63 127 A Y H > S+ 0 0 54 1,-0.2 4,-2.9 2,-0.2 5,-0.2 0.940 115.1 48.5 -44.4 -64.0 1.0 -10.4 -1.3 64 128 A C H > S+ 0 0 10 1,-0.2 4,-3.3 2,-0.2 -1,-0.2 0.884 110.1 54.8 -45.0 -46.4 3.8 -8.0 -0.7 65 129 A R H > S+ 0 0 25 -4,-0.4 4,-1.6 1,-0.2 -1,-0.2 0.964 111.0 41.9 -53.4 -59.4 2.4 -5.7 -3.3 66 130 A F H X S+ 0 0 40 -4,-2.4 4,-1.4 1,-0.2 -1,-0.2 0.874 115.2 53.5 -57.0 -39.2 -1.1 -5.5 -1.7 67 131 A Q H >X S+ 0 0 81 -4,-2.9 4,-2.7 -5,-0.3 3,-0.6 0.965 102.1 55.6 -61.0 -55.1 0.6 -5.2 1.7 68 132 A K H 3X S+ 0 0 62 -4,-3.3 4,-2.4 1,-0.3 -1,-0.2 0.869 104.7 56.0 -45.3 -43.2 2.8 -2.2 0.7 69 133 A C H 3X>S+ 0 0 0 -4,-1.6 5,-1.6 -5,-0.2 4,-1.0 0.921 109.8 44.2 -57.2 -47.0 -0.4 -0.4 -0.3 70 134 A L H X<5S+ 0 0 72 -4,-1.4 3,-0.6 -3,-0.6 -2,-0.2 0.924 110.5 54.6 -64.8 -45.8 -1.9 -0.9 3.2 71 135 A A H 3<5S+ 0 0 90 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.896 105.5 53.3 -54.9 -43.4 1.3 0.1 4.9 72 136 A L H 3<5S- 0 0 56 -4,-2.4 -1,-0.3 -5,-0.2 -2,-0.2 0.808 126.8-101.7 -63.0 -29.7 1.4 3.3 3.0 73 137 A G T <<5 - 0 0 49 -4,-1.0 2,-0.6 -3,-0.6 -3,-0.2 0.765 49.7-177.7 109.5 41.4 -2.1 4.0 4.2 74 138 A M < - 0 0 10 -5,-1.6 2,-0.4 -51,-0.1 -51,-0.2 -0.608 28.7-126.2 -75.4 116.1 -4.3 3.2 1.3 75 139 A S - 0 0 60 -53,-1.5 3,-0.4 -2,-0.6 4,-0.2 -0.477 28.4-179.8 -65.9 117.2 -7.9 4.0 2.2 76 140 A H S > S+ 0 0 121 -2,-0.4 3,-0.8 1,-0.2 2,-0.5 0.742 75.1 68.0 -88.7 -27.1 -10.0 0.8 1.5 77 141 A N T 3 S+ 0 0 137 1,-0.2 -1,-0.2 2,-0.1 -2,-0.1 -0.130 90.9 67.2 -85.4 39.6 -13.3 2.4 2.6 78 142 A A T 3 + 0 0 41 -2,-0.5 -1,-0.2 -3,-0.4 -2,-0.1 0.554 68.3 86.7-127.3 -27.1 -13.2 4.7 -0.4 79 143 A I S < S+ 0 0 36 -3,-0.8 2,-1.8 -4,-0.2 -2,-0.1 0.856 77.2 77.0 -44.2 -41.7 -13.7 2.3 -3.3 80 144 A R + 0 0 203 -4,-0.3 2,-0.3 3,-0.0 -1,-0.2 -0.542 69.2 115.4 -76.1 84.9 -17.4 2.7 -2.8 81 145 A F S S- 0 0 179 -2,-1.8 -3,-0.0 1,-0.1 0, 0.0 -0.842 80.3 -19.4-158.0 115.3 -17.9 6.1 -4.4 82 146 A G S S+ 0 0 79 -2,-0.3 2,-0.3 1,-0.2 -1,-0.1 0.965 82.0 161.1 49.8 81.6 -19.8 7.1 -7.5 83 147 A S - 0 0 80 -3,-0.1 -1,-0.2 3,-0.0 3,-0.1 -0.931 43.8 -88.4-131.6 155.1 -20.2 3.7 -9.3 84 148 A G - 0 0 55 -2,-0.3 2,-0.6 1,-0.1 -1,-0.0 -0.257 51.0 -98.2 -61.6 145.8 -22.5 2.3 -12.0 85 149 A P + 0 0 141 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.537 51.5 177.9 -69.8 109.8 -25.7 0.7 -10.8 86 150 A S - 0 0 103 -2,-0.6 -3,-0.0 1,-0.1 0, 0.0 -0.843 45.9 -71.1-115.9 152.5 -25.2 -3.1 -10.7 87 151 A S 0 0 130 -2,-0.3 -1,-0.1 1,-0.1 0, 0.0 -0.121 360.0 360.0 -41.3 108.0 -27.5 -5.9 -9.7 88 152 A G 0 0 128 -3,-0.0 -1,-0.1 0, 0.0 0, 0.0 -0.658 360.0 360.0 -80.9 360.0 -27.7 -5.4 -6.0