==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 22-MAR-00 1EOD . COMPND 2 MOLECULE: POTASSIUM CHANNEL KV1.1; . SOURCE 2 ORGANISM_SCIENTIFIC: APLYSIA CALIFORNICA; . AUTHOR M.H.NANAO,S.J.CUSHMAN,A.W.JAHNG,D.DERUBEIS,S.CHOE, . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5984.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 73 73.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 10.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 16.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 31.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 66 A E 0 0 147 0, 0.0 15,-1.8 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 130.4 10.4 31.5 107.9 2 67 A R E -A 15 0A 150 13,-0.2 2,-0.5 14,-0.1 13,-0.2 -0.758 360.0-151.6 -88.1 132.7 13.7 31.4 106.1 3 68 A V E -A 14 0A 7 11,-3.4 11,-1.5 -2,-0.4 2,-0.6 -0.905 2.1-153.9-108.2 133.2 14.3 28.0 104.5 4 69 A V E -A 13 0A 33 -2,-0.5 40,-2.5 38,-0.2 2,-0.6 -0.938 8.4-169.2-108.3 119.7 17.8 26.7 104.0 5 70 A I E -Ab 12 44A 1 7,-3.1 7,-2.6 -2,-0.6 2,-0.8 -0.938 6.7-159.2-111.0 113.4 18.2 24.2 101.2 6 71 A N E -Ab 11 45A 7 38,-3.6 40,-3.2 -2,-0.6 2,-0.8 -0.812 9.3-176.0-100.5 104.3 21.6 22.5 101.2 7 72 A V E > S-Ab 10 46A 0 3,-2.5 3,-2.1 -2,-0.8 40,-0.2 -0.836 73.9 -41.4-103.5 100.4 22.6 21.0 97.9 8 73 A S T 3 S- 0 0 40 38,-1.6 -1,-0.2 -2,-0.8 39,-0.1 0.775 124.2 -41.3 54.1 30.6 25.9 19.1 98.2 9 74 A G T 3 S+ 0 0 40 1,-0.3 2,-0.7 37,-0.1 -1,-0.3 0.165 114.9 110.3 106.7 -20.2 27.3 21.8 100.4 10 75 A L E < -A 7 0A 67 -3,-2.1 -3,-2.5 2,-0.0 2,-0.4 -0.820 58.8-149.3 -91.1 117.3 25.9 24.9 98.6 11 76 A R E -A 6 0A 126 -2,-0.7 2,-0.4 -5,-0.2 -5,-0.2 -0.731 12.6-169.4 -93.7 133.9 23.3 26.5 100.7 12 77 A F E -A 5 0A 21 -7,-2.6 -7,-3.1 -2,-0.4 2,-0.4 -0.932 6.2-157.1-116.5 145.8 20.3 28.3 99.2 13 78 A E E +A 4 0A 105 -2,-0.4 2,-0.3 -9,-0.2 -9,-0.2 -0.958 22.2 150.5-123.8 141.9 18.0 30.4 101.2 14 79 A T E -A 3 0A 10 -11,-1.5 -11,-3.4 -2,-0.4 2,-0.3 -0.939 45.6 -91.1-157.4 171.7 14.4 31.4 100.4 15 80 A Q E > -A 2 0A 85 -2,-0.3 4,-1.3 -13,-0.2 3,-0.5 -0.684 30.8-123.9 -91.8 150.5 11.2 32.2 102.1 16 81 A L H > S+ 0 0 35 -15,-1.8 4,-2.9 -2,-0.3 3,-0.2 0.889 112.0 58.4 -57.8 -40.8 8.6 29.5 102.9 17 82 A K H > S+ 0 0 116 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.861 100.5 58.3 -56.2 -38.9 5.9 31.4 100.9 18 83 A T H 4 S+ 0 0 29 -3,-0.5 3,-0.3 2,-0.2 -1,-0.2 0.916 111.1 39.1 -61.0 -45.4 8.2 31.3 97.9 19 84 A L H >< S+ 0 0 0 -4,-1.3 3,-2.3 -3,-0.2 -2,-0.2 0.946 110.1 60.4 -71.0 -45.6 8.3 27.5 97.8 20 85 A N H 3< S+ 0 0 67 -4,-2.9 -1,-0.2 1,-0.3 -2,-0.2 0.731 82.9 80.7 -57.0 -20.8 4.7 27.0 98.8 21 86 A Q T 3< S+ 0 0 93 -4,-1.2 -1,-0.3 1,-0.3 -2,-0.1 0.779 96.0 46.6 -62.1 -18.6 3.5 28.9 95.7 22 87 A F S X S+ 0 0 54 -3,-2.3 3,-0.6 -4,-0.2 6,-0.4 -0.579 74.5 173.2-119.0 72.7 4.0 25.6 93.8 23 88 A P T 3 + 0 0 71 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.575 69.4 61.1 -52.6 -18.7 2.3 23.2 96.2 24 89 A D T 3 S+ 0 0 132 62,-0.1 2,-0.3 -3,-0.1 3,-0.1 -0.277 88.4 91.0-107.0 47.5 2.6 20.1 93.9 25 90 A T S <> S- 0 0 4 -3,-0.6 4,-1.0 1,-0.1 60,-0.2 -0.897 88.8-108.5-132.2 160.6 6.4 20.1 93.7 26 91 A L T >4 S+ 0 0 5 58,-2.3 3,-1.1 -2,-0.3 7,-0.7 0.980 121.6 38.4 -54.5 -55.3 8.9 18.3 95.9 27 92 A L T 34 S+ 0 0 0 57,-0.4 -1,-0.2 1,-0.2 -8,-0.1 0.723 114.8 53.7 -67.9 -22.9 10.0 21.5 97.5 28 93 A G T 34 S+ 0 0 2 -6,-0.4 -1,-0.2 1,-0.1 -2,-0.2 0.509 97.7 74.0 -90.6 -3.3 6.5 23.1 97.7 29 94 A N XX - 0 0 35 -3,-1.1 4,-2.3 -4,-1.0 3,-2.2 -0.900 66.5-154.9-114.6 106.3 5.0 20.1 99.5 30 95 A P H 3> S+ 0 0 46 0, 0.0 4,-2.2 0, 0.0 5,-0.2 0.866 96.2 56.1 -46.1 -43.4 5.8 19.7 103.2 31 96 A Q H 34 S+ 0 0 149 1,-0.2 4,-0.2 2,-0.2 -5,-0.1 0.786 114.8 40.2 -63.4 -21.3 5.1 16.0 103.1 32 97 A K H X4 S+ 0 0 76 -3,-2.2 3,-0.9 -6,-0.3 4,-0.3 0.890 116.6 42.9 -93.1 -46.4 7.7 15.6 100.3 33 98 A R H >< S+ 0 0 14 -4,-2.3 3,-2.3 -7,-0.7 -2,-0.2 0.848 104.1 67.6 -71.6 -27.9 10.5 17.9 101.3 34 99 A N G >< S+ 0 0 76 -4,-2.2 3,-1.3 -5,-0.4 -1,-0.2 0.724 85.5 68.5 -63.4 -20.9 10.3 16.8 104.9 35 100 A R G < S+ 0 0 204 -3,-0.9 -1,-0.3 1,-0.3 -2,-0.2 0.725 105.8 45.9 -66.9 -18.2 11.6 13.4 103.8 36 101 A Y G < S+ 0 0 82 -3,-2.3 9,-2.2 -4,-0.3 -1,-0.3 0.322 83.1 126.3-105.5 5.8 14.8 15.4 103.2 37 102 A Y E < -C 44 0A 90 -3,-1.3 7,-0.2 7,-0.2 3,-0.1 -0.478 51.3-147.3 -71.6 134.4 14.9 17.4 106.4 38 103 A D E >>> -C 43 0A 23 5,-2.9 4,-1.9 -2,-0.2 3,-1.0 -0.862 8.5-166.7-100.3 98.3 18.2 17.2 108.3 39 104 A P T 345S+ 0 0 108 0, 0.0 -1,-0.2 0, 0.0 5,-0.0 0.874 84.3 58.4 -55.8 -36.0 17.1 17.4 112.0 40 105 A L T 345S+ 0 0 133 1,-0.2 -3,-0.0 -3,-0.1 -2,-0.0 0.770 119.7 24.1 -65.1 -30.6 20.7 18.0 113.0 41 106 A R T <45S- 0 0 142 -3,-1.0 -1,-0.2 2,-0.2 3,-0.1 0.476 97.4-125.1-116.3 -4.6 21.3 21.2 110.9 42 107 A N T <5S+ 0 0 109 -4,-1.9 2,-0.3 1,-0.2 -38,-0.2 0.964 76.4 97.8 57.4 54.0 17.7 22.5 110.5 43 108 A E E S+ 0 0 105 1,-0.2 3,-1.5 2,-0.2 4,-0.5 0.938 80.8 54.2 -72.4 -54.2 24.8 21.8 92.4 51 116 A P T 3 S+ 0 0 67 0, 0.0 4,-0.5 0, 0.0 3,-0.4 0.748 101.5 62.2 -59.2 -19.6 24.8 23.9 89.2 52 117 A S T 3> S+ 0 0 0 1,-0.2 4,-1.1 2,-0.1 3,-0.3 0.778 90.0 71.3 -74.7 -24.5 21.2 22.8 88.4 53 118 A F H <> S+ 0 0 1 -3,-1.5 4,-2.8 -4,-0.4 5,-0.3 0.763 80.4 65.6 -68.0 -29.7 19.8 24.3 91.5 54 119 A D H > S+ 0 0 107 -4,-0.5 4,-2.6 -3,-0.4 -1,-0.2 0.959 109.8 45.3 -53.0 -47.2 20.0 28.1 90.8 55 120 A A H > S+ 0 0 9 -4,-0.5 4,-1.2 -3,-0.3 -1,-0.2 0.820 108.7 53.2 -66.0 -35.7 17.5 27.2 88.1 56 121 A I H X S+ 0 0 0 -4,-1.1 4,-0.8 1,-0.2 -1,-0.2 0.956 114.8 42.5 -67.2 -43.8 15.3 25.1 90.3 57 122 A L H >X S+ 0 0 10 -4,-2.8 4,-2.1 1,-0.2 3,-0.8 0.889 109.3 55.2 -68.6 -39.6 15.0 27.9 92.8 58 123 A Y H 3X S+ 0 0 104 -4,-2.6 4,-2.8 -5,-0.3 7,-0.4 0.801 96.9 69.2 -63.7 -25.4 14.6 30.7 90.3 59 124 A F H 3<>S+ 0 0 4 -4,-1.2 5,-2.7 -5,-0.2 6,-0.5 0.926 106.5 37.4 -56.1 -45.9 11.6 28.7 89.0 60 125 A Y H X<5S+ 0 0 0 -4,-0.8 3,-1.0 -3,-0.8 -2,-0.2 0.918 117.0 49.8 -73.8 -44.9 9.8 29.5 92.2 61 126 A Q H 3<5S+ 0 0 104 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.843 112.8 48.6 -63.4 -31.9 11.1 33.1 92.6 62 127 A S T 3<5S- 0 0 34 -4,-2.8 -1,-0.2 -5,-0.2 -2,-0.2 0.472 115.3-110.4 -88.0 -3.8 10.1 33.9 89.1 63 128 A G T < 5S- 0 0 46 -3,-1.0 -3,-0.2 -4,-0.3 -4,-0.1 0.770 88.6 -24.9 82.0 22.9 6.6 32.5 89.2 64 129 A G S - 0 0 30 0, 0.0 3,-1.8 0, 0.0 8,-0.1 -0.451 27.0-115.6 -69.1 146.2 21.7 26.9 82.7 70 135 A V T 3 S+ 0 0 135 1,-0.3 -2,-0.1 -2,-0.1 0, 0.0 0.827 112.0 50.6 -52.6 -36.7 23.9 26.9 79.6 71 136 A D T 3 S+ 0 0 133 -20,-0.1 -1,-0.3 2,-0.1 -3,-0.0 0.008 87.6 93.3 -94.1 31.4 26.5 24.6 81.2 72 137 A V S < S- 0 0 3 -3,-1.8 5,-0.0 -21,-0.1 -1,-0.0 -0.945 81.4-118.3-123.0 110.2 24.2 21.9 82.5 73 138 A P > - 0 0 72 0, 0.0 4,-2.3 0, 0.0 5,-0.3 -0.020 22.4-115.0 -42.8 148.5 23.7 19.0 80.0 74 139 A L H > S+ 0 0 64 1,-0.2 4,-1.8 2,-0.2 5,-0.1 0.878 115.8 46.7 -52.8 -43.3 20.2 18.4 78.7 75 140 A D H > S+ 0 0 100 2,-0.2 4,-2.0 3,-0.2 -1,-0.2 0.879 109.6 50.9 -71.4 -40.3 20.1 15.0 80.5 76 141 A V H > S+ 0 0 39 1,-0.2 4,-2.0 2,-0.2 -2,-0.2 0.985 115.2 42.7 -60.6 -56.5 21.4 16.1 83.8 77 142 A F H X S+ 0 0 0 -4,-2.3 4,-2.7 1,-0.2 5,-0.3 0.851 111.4 53.9 -59.3 -38.9 19.0 19.0 84.1 78 143 A S H X S+ 0 0 23 -4,-1.8 4,-1.8 -5,-0.3 -1,-0.2 0.908 107.6 51.3 -64.4 -39.7 16.0 17.0 82.8 79 144 A E H X S+ 0 0 129 -4,-2.0 4,-2.0 1,-0.2 -1,-0.2 0.928 111.8 50.0 -61.3 -41.5 16.7 14.3 85.5 80 145 A E H X S+ 0 0 11 -4,-2.0 4,-2.4 2,-0.2 -2,-0.2 0.901 108.0 48.3 -66.2 -45.1 16.7 17.2 88.1 81 146 A I H <>S+ 0 0 4 -4,-2.7 5,-1.8 1,-0.2 4,-0.3 0.873 112.6 52.8 -66.2 -28.0 13.5 18.8 87.0 82 147 A K H ><5S+ 0 0 47 -4,-1.8 3,-0.6 -5,-0.3 -2,-0.2 0.906 109.5 47.1 -70.1 -40.5 12.0 15.4 87.2 83 148 A F H 3<5S+ 0 0 46 -4,-2.0 -2,-0.2 1,-0.2 -1,-0.2 0.879 111.5 48.9 -69.3 -39.4 13.2 14.7 90.7 84 149 A Y T 3<5S- 0 0 1 -4,-2.4 -58,-2.3 -5,-0.1 -57,-0.4 0.531 106.4-135.9 -78.6 -0.7 12.0 18.1 92.0 85 150 A E T < 5 + 0 0 78 -3,-0.6 -3,-0.2 -4,-0.3 -2,-0.1 0.920 33.7 175.7 50.0 55.5 8.7 17.2 90.4 86 151 A L < - 0 0 14 -5,-1.8 -1,-0.1 1,-0.2 -62,-0.1 0.667 46.4 -99.6 -68.2 -12.5 8.2 20.6 88.8 87 152 A G >> - 0 0 37 -6,-0.3 4,-1.6 1,-0.1 3,-1.3 -0.062 21.5 -89.6 111.6 149.3 5.0 19.5 87.0 88 153 A E H 3> S+ 0 0 131 1,-0.3 4,-1.9 2,-0.2 3,-0.2 0.908 118.1 58.8 -60.7 -43.9 3.8 18.4 83.6 89 154 A N H 3> S+ 0 0 65 1,-0.2 4,-0.6 2,-0.2 -1,-0.3 0.547 112.7 39.4 -66.7 -4.8 2.9 21.8 82.4 90 155 A A H <> S+ 0 0 3 -3,-1.3 4,-1.9 2,-0.2 -1,-0.2 0.612 107.1 59.6-113.8 -22.6 6.5 23.0 82.8 91 156 A F H X S+ 0 0 62 -4,-1.6 4,-2.1 -3,-0.2 -2,-0.2 0.848 109.3 50.7 -70.9 -29.2 8.2 19.9 81.7 92 157 A E H X S+ 0 0 105 -4,-1.9 4,-3.2 2,-0.2 5,-0.3 0.961 108.4 45.9 -69.9 -55.6 6.3 20.7 78.5 93 158 A R H X S+ 0 0 103 -4,-0.6 4,-2.1 1,-0.2 -1,-0.2 0.874 115.3 52.2 -56.5 -32.8 7.3 24.4 78.2 94 159 A Y H X S+ 0 0 2 -4,-1.9 4,-1.3 2,-0.2 -1,-0.2 0.901 109.5 47.3 -68.9 -41.8 10.8 23.0 78.9 95 160 A R H >X S+ 0 0 71 -4,-2.1 4,-1.7 2,-0.2 3,-0.8 0.969 111.1 50.0 -65.5 -51.8 10.5 20.4 76.1 96 161 A E H 3< S+ 0 0 74 -4,-3.2 3,-0.4 1,-0.2 -2,-0.2 0.928 111.7 50.8 -50.9 -47.5 9.2 22.9 73.6 97 162 A D H 3< S+ 0 0 109 -4,-2.1 -1,-0.2 -5,-0.3 -2,-0.2 0.747 113.1 44.7 -60.5 -30.6 12.2 25.2 74.5 98 163 A E H << S- 0 0 58 -4,-1.3 -1,-0.2 -3,-0.8 -2,-0.2 0.681 119.2 -97.3 -93.0 -18.5 14.8 22.5 74.1 99 164 A G < 0 0 59 -4,-1.7 -3,-0.1 -3,-0.4 -4,-0.1 -0.078 360.0 360.0 129.4 -40.4 13.7 20.9 70.8 100 165 A F 0 0 134 -5,-0.3 -1,-0.1 -6,-0.1 -5,-0.1 0.606 360.0 360.0 -77.4 360.0 11.7 17.8 71.7