==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 23-MAR-00 1EOQ . COMPND 2 MOLECULE: GAG POLYPROTEIN CAPSID PROTEIN P27; . SOURCE 2 ORGANISM_SCIENTIFIC: ROUS SARCOMA VIRUS - PRAGUE C; . AUTHOR R.L.KINGSTON,T.FITZON-OSTENDORP,E.Z.EISENMESSER,G.W.SCHATZ, . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5819.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 70.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 38 49.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 154 A M 0 0 196 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -63.1 -5.1 -4.1 14.4 2 155 A D + 0 0 152 1,-0.0 2,-1.2 2,-0.0 0, 0.0 0.021 360.0 123.6 -96.5 27.1 -2.4 -1.5 15.3 3 156 A I + 0 0 34 14,-0.0 2,-0.4 15,-0.0 -1,-0.0 -0.737 31.0 139.8 -93.7 94.5 -1.3 -1.3 11.7 4 157 A M - 0 0 127 -2,-1.2 40,-0.1 10,-0.0 39,-0.1 -0.995 53.0-113.0-139.8 130.3 -1.5 2.4 10.9 5 158 A Q - 0 0 22 38,-1.6 6,-0.1 -2,-0.4 5,-0.0 -0.285 37.7-116.5 -60.5 141.8 0.8 4.6 8.8 6 159 A G > - 0 0 15 4,-0.2 3,-0.6 1,-0.1 39,-0.1 -0.189 23.1-105.7 -74.4 170.3 2.6 7.3 10.8 7 160 A P T 3 S+ 0 0 121 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.932 119.3 11.4 -61.7 -47.7 2.2 11.1 10.3 8 161 A S T 3 S+ 0 0 128 2,-0.0 2,-0.3 0, 0.0 -3,-0.0 -0.154 97.3 136.1-123.4 36.3 5.6 11.4 8.6 9 162 A E < - 0 0 44 -3,-0.6 -4,-0.0 1,-0.1 5,-0.0 -0.685 53.8-117.9 -88.4 138.0 6.3 7.8 8.1 10 163 A S >> - 0 0 58 -2,-0.3 4,-1.4 1,-0.1 3,-0.7 -0.265 21.5-113.7 -71.3 160.2 7.8 6.7 4.7 11 164 A F H 3> S+ 0 0 22 1,-0.2 4,-2.2 2,-0.2 5,-0.3 0.933 116.3 54.6 -57.5 -52.0 5.9 4.3 2.4 12 165 A V H 3> S+ 0 0 92 1,-0.2 4,-0.7 2,-0.2 -1,-0.2 0.718 104.0 60.0 -57.4 -21.4 8.5 1.5 2.8 13 166 A D H <> S+ 0 0 78 -3,-0.7 4,-1.2 2,-0.2 3,-0.3 0.956 109.3 38.0 -72.6 -52.3 8.0 1.8 6.5 14 167 A F H >X S+ 0 0 0 -4,-1.4 4,-2.7 -3,-0.2 3,-0.9 0.963 112.2 56.1 -63.2 -55.6 4.3 0.9 6.5 15 168 A A H 3X S+ 0 0 15 -4,-2.2 4,-3.0 1,-0.3 5,-0.3 0.750 105.6 55.1 -50.4 -26.2 4.4 -1.8 3.8 16 169 A N H 3X S+ 0 0 83 -4,-0.7 4,-1.8 -3,-0.3 5,-0.3 0.869 108.7 45.3 -77.0 -37.2 7.0 -3.6 5.9 17 170 A R H <>S+ 0 0 8 -4,-3.2 3,-1.2 2,-0.2 5,-0.6 0.894 110.3 52.1 -70.7 -42.3 0.6 -10.5 6.5 23 176 A E H 3<5S+ 0 0 117 -4,-3.1 -1,-0.2 1,-0.3 -2,-0.2 0.848 105.0 57.6 -61.4 -35.9 3.3 -13.1 6.1 24 177 A G T 3<5S+ 0 0 71 -4,-1.7 -1,-0.3 -5,-0.2 -2,-0.2 0.641 99.6 77.4 -69.9 -16.2 3.0 -13.9 9.8 25 178 A S T < 5S- 0 0 74 -3,-1.2 -3,-0.0 -4,-0.3 0, 0.0 -0.276 96.2-105.4 -88.4 176.8 -0.7 -14.7 9.3 26 179 A D T 5S+ 0 0 169 -2,-0.1 -3,-0.1 2,-0.0 -2,-0.1 0.148 71.4 137.3 -88.8 18.9 -2.4 -17.8 7.8 27 180 A L < - 0 0 62 -5,-0.6 5,-0.1 1,-0.1 -2,-0.0 -0.477 56.1-117.2 -70.0 133.8 -3.2 -15.9 4.6 28 181 A P >> - 0 0 70 0, 0.0 4,-1.0 0, 0.0 3,-0.7 -0.246 23.5-110.4 -66.8 156.9 -2.6 -18.0 1.4 29 182 A P H >> S+ 0 0 103 0, 0.0 3,-0.7 0, 0.0 4,-0.7 0.908 119.4 48.1 -52.8 -49.2 0.0 -16.8 -1.2 30 183 A S H 34 S+ 0 0 115 1,-0.2 -3,-0.0 2,-0.1 3,-0.0 0.717 116.5 44.2 -66.8 -23.0 -2.6 -15.9 -3.8 31 184 A A H <> S+ 0 0 32 -3,-0.7 4,-1.0 2,-0.1 -1,-0.2 0.471 91.4 83.7-100.6 -4.9 -4.6 -14.0 -1.1 32 185 A R H S+ 0 0 67 0, 0.0 4,-1.9 0, 0.0 -1,-0.2 0.759 107.8 55.4 -43.3 -29.2 -5.5 -8.7 -2.1 35 188 A V H X S+ 0 0 42 -4,-1.0 4,-2.4 -3,-0.3 -2,-0.2 0.968 110.2 41.5 -71.1 -53.2 -5.0 -8.2 1.7 36 189 A I H X S+ 0 0 5 -4,-1.8 4,-2.5 -3,-0.4 5,-0.2 0.861 111.4 59.9 -61.3 -36.2 -2.3 -5.6 1.4 37 190 A I H X S+ 0 0 18 -4,-2.8 4,-1.6 1,-0.2 -2,-0.2 0.980 113.3 33.7 -55.5 -62.2 -4.3 -4.0 -1.5 38 191 A D H X S+ 0 0 96 -4,-1.9 4,-0.6 1,-0.2 -1,-0.2 0.817 113.8 62.8 -62.6 -33.2 -7.4 -3.3 0.6 39 192 A C H >X S+ 0 0 21 -4,-2.4 4,-1.9 2,-0.2 3,-1.0 0.931 103.8 47.5 -60.1 -46.4 -5.3 -2.7 3.7 40 193 A F H >X S+ 0 0 1 -4,-2.5 4,-3.0 1,-0.3 3,-0.8 0.968 107.4 53.9 -57.9 -57.4 -3.6 0.3 2.1 41 194 A R H 3< S+ 0 0 118 -4,-1.6 -1,-0.3 1,-0.3 -2,-0.2 0.626 123.4 30.7 -54.6 -13.6 -6.8 1.9 0.9 42 195 A Q H << S+ 0 0 115 -3,-1.0 -1,-0.3 -4,-0.6 -2,-0.2 0.473 129.5 33.6-123.5 -8.8 -8.0 1.6 4.5 43 196 A K H << S+ 0 0 67 -4,-1.9 -38,-1.6 -3,-0.8 -3,-0.2 0.517 94.2 96.2-123.1 -13.4 -4.8 2.0 6.6 44 197 A S S < S- 0 0 9 -4,-3.0 -33,-0.0 -5,-0.4 -4,-0.0 -0.394 83.0 -90.8 -79.1 158.7 -2.7 4.4 4.6 45 198 A Q > - 0 0 59 -39,-0.1 4,-3.4 1,-0.1 5,-0.3 -0.074 39.3-103.0 -61.1 166.6 -2.5 8.1 5.2 46 199 A P H > S+ 0 0 87 0, 0.0 4,-1.2 0, 0.0 5,-0.1 0.782 121.6 58.9 -63.2 -27.2 -4.9 10.5 3.4 47 200 A D H > S+ 0 0 129 2,-0.2 4,-0.5 3,-0.1 -3,-0.0 0.889 118.7 27.2 -69.3 -41.5 -2.1 11.5 1.1 48 201 A I H >> S+ 0 0 28 -3,-0.3 4,-2.4 2,-0.2 3,-0.7 0.894 118.9 55.6 -87.2 -46.9 -1.6 7.9 -0.2 49 202 A Q H 3X S+ 0 0 48 -4,-3.4 4,-2.6 1,-0.2 -2,-0.2 0.798 103.9 57.8 -54.1 -34.4 -5.1 6.6 0.3 50 203 A Q H 3X S+ 0 0 124 -4,-1.2 4,-1.5 -5,-0.3 -1,-0.2 0.872 108.4 45.0 -66.2 -38.8 -6.4 9.4 -1.8 51 204 A L H S- 0 0 50 -3,-0.1 4,-1.5 1,-0.1 3,-0.4 -0.944 78.4-118.3-147.3 167.4 -1.6 -5.9 -7.1 62 215 A P H >>S+ 0 0 42 0, 0.0 4,-2.5 0, 0.0 5,-0.5 0.903 111.0 64.2 -74.1 -42.2 1.4 -4.6 -5.0 63 216 A G H 45S+ 0 0 48 1,-0.2 4,-0.3 2,-0.2 -4,-0.0 0.692 110.4 40.2 -54.0 -20.3 3.7 -4.6 -7.9 64 217 A E H >5S+ 0 0 80 -3,-0.4 4,-2.6 3,-0.1 -1,-0.2 0.795 111.5 53.5 -97.6 -39.2 1.4 -1.9 -9.3 65 218 A I H X5S+ 0 0 0 -4,-1.5 4,-3.9 2,-0.2 6,-0.2 0.954 112.7 43.3 -63.1 -50.8 0.7 0.1 -6.2 66 219 A I H X5S+ 0 0 62 -4,-2.5 4,-2.8 1,-0.3 5,-0.3 0.922 116.3 48.4 -62.3 -40.3 4.4 0.6 -5.3 67 220 A K H >