==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 29-MAR-07 2EOD . COMPND 2 MOLECULE: TNF RECEPTOR-ASSOCIATED FACTOR 4; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 66 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5369.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 12.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 10.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 16.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 183 A G 0 0 74 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-176.1 -22.2 -14.4 -7.2 2 184 A S - 0 0 131 1,-0.2 3,-0.1 3,-0.0 0, 0.0 0.924 360.0 -50.1 56.0 47.8 -23.7 -15.7 -10.5 3 185 A S S S+ 0 0 141 1,-0.2 2,-0.3 0, 0.0 -1,-0.2 0.914 119.0 111.2 58.0 45.1 -27.1 -14.1 -9.7 4 186 A G S S- 0 0 48 0, 0.0 2,-0.7 0, 0.0 -1,-0.2 -0.941 70.7-120.8-144.4 165.6 -27.1 -15.6 -6.2 5 187 A S + 0 0 128 -2,-0.3 -3,-0.0 1,-0.2 0, 0.0 -0.804 46.2 144.8-112.7 90.0 -26.9 -14.7 -2.6 6 188 A S - 0 0 110 -2,-0.7 -1,-0.2 2,-0.0 0, 0.0 0.934 48.8-130.7 -87.2 -59.1 -23.9 -16.5 -1.0 7 189 A G - 0 0 68 1,-0.1 2,-0.8 2,-0.0 -2,-0.1 0.674 8.8-144.5 103.4 97.7 -22.6 -14.0 1.5 8 190 A K - 0 0 113 14,-0.0 -1,-0.1 13,-0.0 -2,-0.0 -0.814 19.3-144.8 -96.2 106.1 -19.0 -13.0 1.7 9 191 A R - 0 0 202 -2,-0.8 13,-2.8 12,-0.1 14,-0.4 -0.222 12.1-130.4 -65.1 157.1 -17.9 -12.4 5.3 10 192 A T E -A 21 0A 64 11,-0.3 11,-0.3 12,-0.1 -1,-0.1 -0.904 8.7-149.2-115.2 141.6 -15.4 -9.7 6.2 11 193 A Q E -A 20 0A 71 9,-1.9 2,-0.8 -2,-0.4 9,-0.8 -0.933 17.1-132.1-114.1 118.0 -12.3 -10.1 8.3 12 194 A P E -A 19 0A 77 0, 0.0 7,-0.2 0, 0.0 5,-0.1 -0.534 26.9-130.5 -69.8 104.8 -11.1 -7.0 10.3 13 195 A C - 0 0 6 5,-2.2 4,-0.2 -2,-0.8 5,-0.1 -0.288 6.0-149.0 -57.5 135.5 -7.3 -6.8 9.6 14 196 A T S S+ 0 0 120 3,-0.2 -1,-0.2 2,-0.1 0, 0.0 0.578 93.8 49.7 -82.4 -10.4 -5.3 -6.4 12.8 15 197 A Y S S+ 0 0 82 3,-0.1 -1,-0.1 1,-0.1 -2,-0.0 0.927 123.0 23.0 -89.9 -69.4 -2.7 -4.4 10.9 16 198 A C S S- 0 0 22 2,-0.1 -2,-0.1 1,-0.1 3,-0.1 0.393 96.1-135.7 -79.7 4.3 -4.5 -1.7 9.0 17 199 A T + 0 0 122 -4,-0.2 2,-0.3 1,-0.2 -3,-0.2 0.825 62.7 129.9 42.8 37.1 -7.4 -2.1 11.5 18 200 A K - 0 0 131 -5,-0.1 -5,-2.2 -7,-0.1 2,-0.4 -0.804 63.4-109.0-118.5 160.6 -9.7 -2.0 8.5 19 201 A E E +A 12 0A 151 -2,-0.3 2,-0.3 -7,-0.2 -9,-0.0 -0.758 43.6 164.9 -92.4 130.8 -12.5 -4.2 7.3 20 202 A F E -A 11 0A 68 -9,-0.8 -9,-1.9 -2,-0.4 2,-0.4 -0.872 42.3 -84.0-138.0 170.1 -11.9 -6.5 4.3 21 203 A V E >> -A 10 0A 48 -11,-0.3 4,-3.0 -2,-0.3 3,-2.0 -0.641 31.1-131.4 -80.8 127.8 -13.5 -9.5 2.5 22 204 A F H 3> S+ 0 0 94 -13,-2.8 4,-0.8 -2,-0.4 -1,-0.1 0.775 111.6 57.7 -46.1 -27.9 -12.4 -12.8 4.0 23 205 A D H 34 S+ 0 0 93 -14,-0.4 4,-0.4 2,-0.1 -1,-0.3 0.845 116.4 31.8 -73.1 -35.0 -11.7 -13.7 0.3 24 206 A T H X> S+ 0 0 50 -3,-2.0 4,-2.8 2,-0.2 3,-2.3 0.909 103.9 71.2 -87.4 -50.7 -9.3 -10.8 -0.1 25 207 A I H 3X S+ 0 0 7 -4,-3.0 4,-2.8 1,-0.3 5,-0.2 0.809 91.4 65.4 -33.5 -42.3 -7.9 -10.6 3.4 26 208 A Q H 3< S+ 0 0 130 -4,-0.8 -1,-0.3 -5,-0.3 -2,-0.2 0.915 118.4 21.9 -49.8 -49.6 -6.1 -13.9 2.6 27 209 A S H X> S+ 0 0 84 -3,-2.3 3,-2.7 -4,-0.4 4,-0.9 0.886 117.7 63.5 -86.2 -45.3 -4.0 -12.1 -0.1 28 210 A H H >X S+ 0 0 28 -4,-2.8 4,-2.9 1,-0.3 3,-0.5 0.889 84.4 77.1 -45.3 -47.2 -4.3 -8.6 1.2 29 211 A Q H 3< S+ 0 0 77 -4,-2.8 -1,-0.3 -5,-0.3 -2,-0.1 0.774 99.2 46.1 -34.7 -33.5 -2.5 -9.7 4.3 30 212 A Y H <4 S+ 0 0 191 -3,-2.7 -1,-0.3 -5,-0.2 -2,-0.2 0.916 113.7 45.0 -78.9 -46.9 0.6 -9.5 2.1 31 213 A Q H << S+ 0 0 141 -4,-0.9 -2,-0.2 -3,-0.5 -3,-0.1 0.921 85.1 110.3 -63.1 -45.5 -0.2 -6.1 0.5 32 214 A C < - 0 0 1 -4,-2.9 18,-0.2 1,-0.1 19,-0.0 -0.002 58.1-156.1 -35.3 120.5 -1.1 -4.6 3.9 33 215 A P S S+ 0 0 37 0, 0.0 17,-2.1 0, 0.0 18,-0.7 0.943 87.4 62.6 -69.7 -50.4 1.7 -2.0 4.6 34 216 A R S S+ 0 0 144 15,-0.2 3,-0.1 16,-0.2 -2,-0.1 0.851 78.4 111.8 -43.6 -40.9 1.3 -2.0 8.4 35 217 A L S S- 0 0 37 14,-0.2 15,-1.9 1,-0.1 16,-0.1 -0.050 78.0-113.9 -39.7 127.3 2.2 -5.7 8.3 36 218 A P E -B 49 0B 64 0, 0.0 2,-0.4 0, 0.0 13,-0.3 -0.404 34.7-169.5 -69.8 142.0 5.6 -6.1 9.9 37 219 A V E -B 48 0B 39 11,-1.7 11,-1.5 -2,-0.1 2,-0.2 -0.998 23.4-114.8-137.8 138.4 8.6 -7.2 7.8 38 220 A A E -B 47 0B 65 -2,-0.4 9,-0.2 9,-0.2 15,-0.0 -0.455 39.8-105.6 -71.2 139.1 12.1 -8.4 8.6 39 221 A C > - 0 0 4 7,-1.1 3,-1.2 -2,-0.2 -1,-0.1 -0.415 16.4-142.2 -67.3 135.3 14.9 -6.1 7.4 40 222 A P T 3 S+ 0 0 91 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.707 103.1 55.4 -69.7 -20.5 16.9 -7.5 4.4 41 223 A N T 3 S- 0 0 68 22,-0.0 22,-0.1 0, 0.0 -2,-0.1 0.417 99.1-139.9 -91.8 0.1 20.1 -6.1 5.9 42 224 A Q < + 0 0 152 -3,-1.2 -4,-0.0 4,-0.1 0, 0.0 0.883 43.7 157.8 39.6 52.4 19.5 -8.0 9.2 43 225 A C - 0 0 47 3,-0.1 -1,-0.1 1,-0.0 18,-0.0 0.952 60.7 -97.8 -69.0 -51.5 20.7 -5.0 11.1 44 226 A G S S+ 0 0 61 2,-0.1 3,-0.1 0, 0.0 -2,-0.0 0.021 96.7 106.1 159.1 -37.7 19.0 -5.9 14.4 45 227 A V - 0 0 77 1,-0.2 2,-1.1 15,-0.0 -7,-0.0 0.782 66.6-158.5 -37.0 -33.3 15.7 -3.9 14.6 46 228 A G + 0 0 36 -7,-0.1 -7,-1.1 2,-0.0 2,-0.3 -0.718 56.2 17.9 91.0 -94.7 14.1 -7.3 13.8 47 229 A T E +B 38 0B 98 -2,-1.1 2,-0.3 -9,-0.2 -9,-0.2 -0.887 62.9 170.9-117.2 147.3 10.7 -6.5 12.4 48 230 A V E -B 37 0B 23 -11,-1.5 -11,-1.7 -2,-0.3 5,-0.2 -0.943 42.1 -89.9-157.1 131.8 9.3 -3.2 11.0 49 231 A A E >> -B 36 0B 18 -2,-0.3 3,-1.8 -13,-0.3 4,-1.0 0.066 38.6-118.0 -36.6 146.0 6.1 -2.3 9.2 50 232 A R T 34 S+ 0 0 119 -17,-2.1 3,-0.5 -15,-1.9 -16,-0.2 0.867 118.9 49.3 -58.9 -37.7 6.4 -2.6 5.4 51 233 A E T 34 S+ 0 0 88 -18,-0.7 4,-0.3 1,-0.2 -1,-0.3 0.403 109.9 54.3 -82.4 2.9 5.8 1.1 5.0 52 234 A D T <> S+ 0 0 78 -3,-1.8 4,-2.0 -19,-0.3 -2,-0.2 0.545 89.8 73.4-109.2 -15.1 8.4 1.7 7.7 53 235 A L H X S+ 0 0 30 -4,-1.0 4,-3.2 -3,-0.5 5,-0.2 0.917 90.2 59.9 -65.2 -44.5 11.2 -0.3 6.0 54 236 A P H > S+ 0 0 81 0, 0.0 4,-0.6 0, 0.0 -1,-0.2 0.947 112.4 35.5 -47.9 -62.7 11.7 2.5 3.3 55 237 A G H >> S+ 0 0 34 -4,-0.3 3,-1.5 1,-0.2 4,-0.9 0.919 116.2 55.2 -61.0 -45.6 12.6 5.2 5.8 56 238 A H H 3<>S+ 0 0 21 -4,-2.0 5,-2.5 1,-0.3 3,-0.2 0.921 102.7 55.5 -53.6 -48.3 14.5 2.9 8.1 57 239 A L H 3<5S+ 0 0 41 -4,-3.2 -1,-0.3 1,-0.2 -2,-0.2 0.693 97.7 71.3 -59.4 -17.3 16.7 1.7 5.3 58 240 A K H <<5S- 0 0 148 -3,-1.5 7,-0.4 -4,-0.6 -1,-0.2 0.995 132.9 -36.8 -62.4 -66.2 17.5 5.4 4.9 59 241 A D T <5S+ 0 0 117 -4,-0.9 -3,-0.1 -3,-0.2 -2,-0.1 0.607 126.6 76.1-128.2 -46.0 19.6 5.9 8.0 60 242 A S T 5S+ 0 0 77 -5,-0.4 -3,-0.2 -15,-0.0 -4,-0.1 0.882 83.3 78.7 -34.5 -65.0 18.1 3.8 10.8 61 243 A C S