==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE 30-MAR-07 2EQS . COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE DHX8; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 103 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7786.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 53.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 25.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 12.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 253 A G 0 0 125 0, 0.0 2,-1.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 166.7 5.4 31.4 -1.5 2 254 A S + 0 0 127 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.694 360.0 118.6 -85.8 96.7 4.6 29.8 -4.9 3 255 A S + 0 0 120 -2,-1.2 0, 0.0 0, 0.0 0, 0.0 -0.926 23.7 158.7-161.7 133.1 6.5 26.5 -4.9 4 256 A G + 0 0 69 -2,-0.3 3,-0.1 2,-0.1 -2,-0.0 0.326 21.5 137.7-119.3-111.4 5.5 22.9 -5.1 5 257 A S - 0 0 130 1,-0.1 -1,-0.0 2,-0.1 0, 0.0 0.901 47.8-157.9 59.2 42.8 7.5 19.8 -6.1 6 258 A S + 0 0 97 1,-0.2 -1,-0.1 2,-0.1 5,-0.1 -0.202 38.5 134.2 -53.1 138.7 6.0 17.8 -3.3 7 259 A G + 0 0 38 -3,-0.1 29,-0.2 3,-0.1 -1,-0.2 0.388 52.1 72.5-153.1 -46.8 8.1 14.8 -2.3 8 260 A E S S+ 0 0 120 27,-0.1 29,-0.6 28,-0.1 -2,-0.1 0.875 103.4 49.8 -47.7 -42.8 8.5 14.5 1.5 9 261 A E S S- 0 0 81 27,-0.1 27,-0.0 1,-0.1 65,-0.0 -0.756 95.4-108.0-102.7 147.9 4.9 13.3 1.6 10 262 A P - 0 0 11 0, 0.0 2,-0.5 0, 0.0 64,-0.1 -0.281 29.5-121.0 -69.7 155.7 3.3 10.6 -0.6 11 263 A T > - 0 0 49 -4,-0.1 3,-1.3 -5,-0.1 60,-0.3 -0.868 23.6-118.3-104.3 130.3 0.9 11.4 -3.4 12 264 A I T 3 S+ 0 0 90 -2,-0.5 60,-0.2 1,-0.2 3,-0.1 -0.392 98.6 18.6 -65.4 136.5 -2.7 10.0 -3.3 13 265 A G T 3 S+ 0 0 48 58,-2.9 -1,-0.2 1,-0.3 2,-0.1 0.124 101.8 112.5 90.6 -21.9 -3.5 7.8 -6.3 14 266 A D < - 0 0 80 -3,-1.3 57,-2.5 57,-0.2 2,-0.4 -0.454 65.1-124.1 -83.2 157.6 0.2 7.3 -7.1 15 267 A I E +A 70 0A 58 55,-0.2 2,-0.3 -2,-0.1 55,-0.3 -0.821 29.1 178.2-105.4 142.8 2.0 4.0 -6.7 16 268 A Y E -A 69 0A 50 53,-2.7 53,-2.1 -2,-0.4 2,-0.3 -0.930 28.6-107.8-138.9 162.1 5.2 3.4 -4.6 17 269 A N E +A 68 0A 81 16,-0.3 16,-2.5 -2,-0.3 2,-0.2 -0.703 43.4 159.0 -93.2 142.3 7.5 0.5 -3.6 18 270 A G E -AB 67 32A 1 49,-2.9 49,-2.9 -2,-0.3 2,-0.3 -0.845 27.3-133.7-147.7-176.6 7.5 -0.9 -0.1 19 271 A K E -AB 66 31A 74 12,-1.2 12,-2.9 47,-0.3 2,-0.3 -0.994 27.5-107.7-149.9 141.2 8.4 -4.0 2.0 20 272 A V E + B 0 30A 0 45,-2.2 44,-2.5 -2,-0.3 45,-0.3 -0.522 35.6 168.4 -71.0 125.9 6.6 -6.0 4.7 21 273 A T E + 0 0 42 8,-2.9 2,-0.3 -2,-0.3 -1,-0.2 0.717 69.5 18.7-106.7 -33.0 8.1 -5.4 8.1 22 274 A S E - B 0 29A 56 7,-0.9 7,-2.8 40,-0.1 2,-0.8 -0.961 64.9-148.0-146.2 124.2 5.5 -7.1 10.3 23 275 A I E - B 0 28A 55 -2,-0.3 5,-0.2 5,-0.2 2,-0.2 -0.810 20.5-164.2 -95.7 106.9 2.9 -9.7 9.4 24 276 A M - 0 0 60 3,-2.1 33,-0.3 -2,-0.8 34,-0.1 -0.597 33.6-113.9 -89.7 151.0 -0.3 -9.3 11.5 25 277 A Q S S+ 0 0 157 -2,-0.2 32,-0.4 1,-0.2 -1,-0.1 0.763 120.1 32.3 -52.0 -25.3 -2.9 -12.0 11.8 26 278 A F S S- 0 0 105 1,-0.2 -1,-0.2 30,-0.1 2,-0.2 0.887 132.9 -17.9 -96.3 -61.8 -5.2 -9.4 10.0 27 279 A G - 0 0 0 17,-0.1 -3,-2.1 18,-0.1 2,-0.4 -0.471 64.3-106.2-129.5-159.0 -2.9 -7.5 7.7 28 280 A C E -BC 23 43A 0 15,-1.5 15,-2.2 -5,-0.2 2,-0.5 -0.995 22.0-124.7-143.7 134.0 0.7 -6.7 7.1 29 281 A F E -BC 22 42A 50 -7,-2.8 -8,-2.9 -2,-0.4 -7,-0.9 -0.646 26.6-166.3 -80.3 124.6 2.8 -3.5 7.7 30 282 A V E -BC 20 41A 0 11,-2.1 11,-2.2 -2,-0.5 2,-0.5 -0.953 9.2-147.2-117.1 121.9 4.5 -2.2 4.5 31 283 A Q E -BC 19 40A 28 -12,-2.9 -12,-1.2 -2,-0.5 9,-0.2 -0.741 18.3-130.5 -89.5 127.9 7.3 0.4 4.7 32 284 A L E -B 18 0A 9 7,-2.5 7,-0.3 -2,-0.5 2,-0.3 -0.418 20.8-149.5 -75.2 150.7 7.5 2.8 1.7 33 285 A E + 0 0 106 -16,-2.5 2,-1.6 -2,-0.1 -16,-0.3 -0.772 64.7 26.6-118.7 164.3 10.8 3.4 0.0 34 286 A G S S+ 0 0 65 -2,-0.3 4,-0.1 1,-0.2 -16,-0.0 -0.515 85.3 107.9 88.5 -70.7 12.4 6.4 -1.8 35 287 A L S S- 0 0 29 -2,-1.6 -1,-0.2 1,-0.1 -27,-0.1 -0.012 71.0-132.5 -41.3 143.3 10.4 9.1 -0.0 36 288 A R S S+ 0 0 211 -29,-0.2 2,-1.0 1,-0.1 -1,-0.1 0.943 93.2 68.7 -67.2 -49.5 12.6 11.2 2.4 37 289 A K S S- 0 0 99 -29,-0.6 -1,-0.1 -30,-0.1 -2,-0.1 -0.623 95.8-122.8 -76.8 103.8 10.0 11.0 5.2 38 290 A R - 0 0 204 -2,-1.0 2,-0.5 -4,-0.1 -5,-0.1 -0.241 35.2-169.9 -49.2 114.6 10.0 7.4 6.4 39 291 A W - 0 0 41 -7,-0.3 -7,-2.5 -4,-0.1 2,-0.5 -0.949 10.6-168.9-117.0 130.3 6.4 6.3 6.0 40 292 A E E +C 31 0A 88 -2,-0.5 39,-0.3 -9,-0.2 -9,-0.2 -0.957 11.9 176.7-121.8 116.2 5.0 3.0 7.3 41 293 A G E -C 30 0A 2 -11,-2.2 -11,-2.1 -2,-0.5 2,-0.4 -0.602 20.9-128.5-111.6 173.9 1.5 1.9 6.3 42 294 A L E -Cd 29 80A 57 37,-0.7 39,-0.7 -13,-0.3 2,-0.6 -0.965 7.5-145.9-126.6 141.6 -0.7 -1.2 7.0 43 295 A V E -C 28 0A 0 -15,-2.2 -15,-1.5 -2,-0.4 39,-0.1 -0.904 19.2-141.9-110.2 110.0 -2.5 -3.4 4.5 44 296 A H > - 0 0 93 -2,-0.6 3,-2.3 37,-0.3 -17,-0.1 -0.155 30.4-103.9 -63.0 161.3 -5.8 -4.8 5.8 45 297 A I G >> S+ 0 0 47 1,-0.3 4,-0.7 2,-0.1 3,-0.6 0.712 124.0 60.9 -59.6 -19.4 -6.8 -8.4 5.0 46 298 A S G 34 S+ 0 0 59 1,-0.2 -1,-0.3 2,-0.1 -2,-0.1 0.624 95.9 61.3 -82.4 -14.3 -9.2 -6.8 2.5 47 299 A E G <4 S+ 0 0 40 -3,-2.3 36,-0.9 1,-0.1 37,-0.6 -0.227 97.4 59.5-105.4 42.0 -6.3 -5.3 0.6 48 300 A L T <4 S+ 0 0 20 -3,-0.6 2,-0.2 1,-0.5 -2,-0.1 0.585 106.5 18.3-130.6 -50.1 -4.6 -8.6 -0.3 49 301 A R S < S- 0 0 140 -4,-0.7 -1,-0.5 1,-0.1 3,-0.2 -0.746 85.6 -85.7-123.9 172.1 -7.0 -10.6 -2.4 50 302 A R S S- 0 0 213 -2,-0.2 2,-0.1 1,-0.2 -1,-0.1 -0.333 73.9 -57.6 -75.5 159.4 -10.1 -10.1 -4.5 51 303 A E S S+ 0 0 193 1,-0.1 2,-0.2 -2,-0.1 -1,-0.2 -0.078 107.6 82.8 -38.6 95.3 -13.6 -10.0 -2.9 52 304 A G S S- 0 0 59 -3,-0.2 2,-0.5 -2,-0.1 -1,-0.1 -0.723 86.6 -45.4-165.1-144.2 -13.5 -13.5 -1.4 53 305 A R - 0 0 229 -2,-0.2 2,-0.5 0, 0.0 -3,-0.1 -0.946 44.0-162.8-118.4 115.0 -12.3 -15.6 1.5 54 306 A V - 0 0 38 -2,-0.5 3,-0.1 1,-0.2 -9,-0.0 -0.829 6.0-165.9 -99.4 129.6 -8.8 -15.0 2.9 55 307 A A - 0 0 85 -2,-0.5 2,-0.3 1,-0.3 -1,-0.2 0.991 63.7 -29.9 -73.5 -70.8 -7.2 -17.6 5.1 56 308 A N > - 0 0 60 1,-0.1 4,-0.8 -11,-0.0 -1,-0.3 -0.990 41.0-129.5-151.2 154.9 -4.2 -15.8 6.6 57 309 A V H > S+ 0 0 0 -32,-0.4 4,-3.0 -2,-0.3 -32,-0.1 0.806 95.8 81.8 -74.3 -30.5 -1.7 -13.0 5.7 58 310 A A H 4 S+ 0 0 57 1,-0.3 -1,-0.2 2,-0.2 3,-0.1 0.897 102.7 32.9 -38.2 -60.1 1.3 -15.2 6.6 59 311 A D H 4 S+ 0 0 150 -3,-0.2 -1,-0.3 1,-0.2 -2,-0.2 0.794 113.7 64.2 -70.2 -28.5 1.1 -17.0 3.3 60 312 A V H < S+ 0 0 46 -4,-0.8 2,-0.3 1,-0.2 -2,-0.2 0.909 120.6 2.2 -61.4 -43.7 -0.0 -13.8 1.6 61 313 A V < - 0 0 4 -4,-3.0 2,-0.2 -3,-0.1 -1,-0.2 -0.976 68.7-137.7-144.7 156.8 3.2 -12.0 2.5 62 314 A S > - 0 0 67 -2,-0.3 3,-1.0 -3,-0.1 2,-0.5 -0.619 36.0 -86.7-110.6 171.1 6.6 -12.8 4.1 63 315 A K T 3 S+ 0 0 165 1,-0.3 -42,-0.2 -2,-0.2 3,-0.1 -0.668 111.6 4.4 -81.6 123.2 8.8 -10.9 6.5 64 316 A G T 3 S+ 0 0 39 -44,-2.5 2,-0.4 -2,-0.5 -1,-0.3 0.765 94.2 148.7 76.4 25.6 11.2 -8.5 4.8 65 317 A Q < - 0 0 85 -3,-1.0 -45,-2.2 -45,-0.3 2,-0.3 -0.791 49.6-119.5 -97.5 134.7 9.7 -9.2 1.4 66 318 A R E +A 19 0A 221 -2,-0.4 2,-0.3 -47,-0.2 -47,-0.3 -0.543 41.7 168.9 -73.8 129.6 9.6 -6.5 -1.3 67 319 A V E -A 18 0A 5 -49,-2.9 -49,-2.9 -2,-0.3 2,-0.5 -0.952 32.0-122.4-140.2 159.2 6.1 -5.6 -2.4 68 320 A K E +A 17 0A 61 -2,-0.3 2,-0.3 -51,-0.2 18,-0.2 -0.902 35.4 167.1-107.7 126.6 4.4 -2.9 -4.5 69 321 A V E -A 16 0A 0 -53,-2.1 -53,-2.7 -2,-0.5 2,-0.4 -0.828 25.7-129.1-131.2 169.8 1.6 -0.8 -3.0 70 322 A K E -AE 15 82A 7 12,-1.5 12,-1.6 -2,-0.3 2,-0.9 -0.946 26.2-111.5-124.3 144.3 -0.3 2.4 -3.8 71 323 A V E + E 0 81A 0 -57,-2.5 -58,-2.9 -2,-0.4 10,-0.2 -0.615 35.7 175.2 -76.1 104.3 -1.0 5.5 -1.7 72 324 A L E - 0 0 43 -2,-0.9 2,-0.3 8,-0.8 -1,-0.2 0.981 63.6 -21.7 -72.5 -60.5 -4.7 5.4 -1.0 73 325 A S E - 0 0 59 7,-0.2 7,-2.2 -61,-0.1 2,-0.4 -0.987 54.2-152.6-155.4 143.9 -5.0 8.4 1.4 74 326 A F E + E 0 79A 34 -2,-0.3 2,-0.3 5,-0.2 5,-0.2 -0.977 20.9 160.8-124.0 128.0 -2.7 10.4 3.6 75 327 A T E > - E 0 78A 81 3,-2.4 3,-1.1 -2,-0.4 2,-0.1 -0.872 60.2 -63.1-149.6 111.3 -3.8 12.3 6.7 76 328 A G T 3 S- 0 0 50 -2,-0.3 -1,-0.1 1,-0.3 0, 0.0 -0.288 123.2 -5.2 53.3-118.2 -1.5 13.4 9.5 77 329 A T T 3 S+ 0 0 138 -2,-0.1 2,-0.4 -3,-0.1 -1,-0.3 -0.154 117.9 94.2 -98.9 38.0 -0.0 10.3 11.1 78 330 A K E < +E 75 0A 142 -3,-1.1 -3,-2.4 2,-0.0 2,-0.5 -0.944 46.0 175.9-135.2 113.3 -2.1 8.0 9.0 79 331 A T E -E 74 0A 15 -2,-0.4 -37,-0.7 -39,-0.3 2,-0.2 -0.952 12.1-160.4-121.7 114.6 -0.9 6.5 5.7 80 332 A S E -d 42 0A 54 -7,-2.2 -8,-0.8 -2,-0.5 2,-0.3 -0.603 9.0-174.4 -91.7 152.7 -3.0 3.9 3.9 81 333 A L E -E 71 0A 0 -39,-0.7 2,-0.4 -2,-0.2 -37,-0.3 -0.998 11.4-152.1-148.5 143.7 -1.7 1.5 1.3 82 334 A S E +E 70 0A 2 -12,-1.6 -12,-1.5 -2,-0.3 4,-0.1 -0.934 13.5 175.7-119.9 141.1 -3.2 -1.1 -1.1 83 335 A M S > S+ 0 0 12 -36,-0.9 3,-1.2 -2,-0.4 -35,-0.2 0.817 81.3 53.1-105.1 -54.9 -1.6 -4.2 -2.5 84 336 A K T 3 S+ 0 0 73 -37,-0.6 -36,-0.1 1,-0.3 4,-0.1 0.827 107.1 57.8 -52.0 -33.5 -4.3 -6.0 -4.5 85 337 A D T 3 S+ 0 0 7 1,-0.2 9,-2.7 -38,-0.1 2,-0.8 0.850 102.0 60.3 -66.6 -34.9 -4.7 -2.6 -6.4 86 338 A V B < S-F 93 0B 1 -3,-1.2 -18,-0.2 -18,-0.2 7,-0.2 -0.847 95.4-122.8-100.8 107.5 -1.1 -2.7 -7.4 87 339 A D > - 0 0 63 5,-1.6 4,-1.0 -2,-0.8 2,-0.7 -0.169 12.9-135.9 -47.5 130.1 -0.2 -5.8 -9.5 88 340 A Q T 4 S+ 0 0 90 1,-0.2 -1,-0.2 2,-0.1 -4,-0.0 -0.126 95.7 55.1 -83.5 39.9 2.6 -7.8 -7.8 89 341 A E T 4 S- 0 0 158 -2,-0.7 -1,-0.2 3,-0.1 -2,-0.0 0.551 128.6 -4.2-132.0 -60.7 4.3 -8.2 -11.2 90 342 A T T 4 S- 0 0 97 2,-0.1 -2,-0.1 -22,-0.0 -3,-0.0 0.492 92.0-113.1-117.2 -12.5 4.9 -4.8 -13.0 91 343 A G < + 0 0 14 -4,-1.0 -3,-0.1 1,-0.2 2,-0.1 0.793 55.6 167.1 83.0 29.6 3.2 -2.5 -10.5 92 344 A E - 0 0 115 1,-0.1 -5,-1.6 -5,-0.1 2,-0.9 -0.380 45.8 -99.4 -76.1 155.8 0.4 -1.5 -12.9 93 345 A D B -F 86 0B 64 -7,-0.2 -7,-0.2 1,-0.1 -1,-0.1 -0.661 34.1-175.5 -79.9 105.2 -2.6 0.4 -11.6 94 346 A L + 0 0 79 -9,-2.7 3,-0.2 -2,-0.9 -1,-0.1 -0.048 58.0 98.2 -90.3 32.6 -5.4 -2.2 -11.3 95 347 A N + 0 0 37 1,-0.1 -1,-0.1 -10,-0.1 3,-0.1 -0.718 34.6 157.8-123.4 80.7 -7.9 0.5 -10.4 96 348 A P S S+ 0 0 125 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.845 74.7 18.1 -69.7 -35.5 -9.9 1.4 -13.5 97 349 A N S S+ 0 0 147 -3,-0.2 2,-0.3 2,-0.0 -3,-0.0 -1.000 70.2 150.9-141.9 139.8 -12.8 2.8 -11.5 98 350 A R - 0 0 108 -2,-0.3 2,-0.4 -3,-0.1 -3,-0.0 -0.970 21.8-153.6-165.0 150.1 -13.2 4.0 -7.9 99 351 A R - 0 0 226 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.988 32.8 -97.6-133.2 141.3 -15.2 6.4 -5.8 100 352 A R - 0 0 172 -2,-0.4 3,-0.1 1,-0.1 -1,-0.1 0.074 24.8-155.9 -46.7 164.3 -14.4 8.2 -2.6 101 353 A N - 0 0 156 1,-0.4 2,-0.3 0, 0.0 -1,-0.1 0.758 65.1 -8.4-112.1 -52.0 -15.7 6.7 0.7 102 354 A L 0 0 152 0, 0.0 -1,-0.4 0, 0.0 0, 0.0 -0.995 360.0 360.0-151.1 150.6 -15.9 9.6 3.2 103 355 A V 0 0 176 -2,-0.3 -3,-0.0 -3,-0.1 0, 0.0 -0.990 360.0 360.0-129.6 360.0 -14.8 13.2 3.5