==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 30-MAR-07 2EQZ . COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN B3; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR X.R.QIN,C.KUROSAKI,M.YOSHIDA,F.HAYAHSI,S.YOKOYAMA,RIKEN . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7525.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 65 75.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 16.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 47 54.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 116 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-130.8 -0.7 4.4 15.7 2 2 A S + 0 0 144 1,-0.1 0, 0.0 2,-0.0 0, 0.0 0.861 360.0 128.5 36.9 49.8 2.7 5.7 16.8 3 3 A S - 0 0 90 2,-0.0 -1,-0.1 0, 0.0 3,-0.1 0.860 38.8-173.5 -96.6 -50.0 4.3 3.2 14.5 4 4 A G + 0 0 85 1,-0.1 2,-0.2 2,-0.0 -2,-0.0 0.952 47.8 104.3 51.3 58.7 6.7 5.4 12.4 5 5 A S - 0 0 79 3,-0.0 2,-1.4 0, 0.0 -1,-0.1 -0.725 59.5-149.6-170.8 115.2 7.7 2.6 10.1 6 6 A S S S- 0 0 127 -2,-0.2 2,-0.4 -3,-0.1 -2,-0.0 -0.656 76.8 -33.0 -90.9 83.4 6.7 1.9 6.4 7 7 A G S S- 0 0 51 -2,-1.4 2,-0.3 2,-0.0 0, 0.0 -0.888 81.4 -87.8 113.1-141.4 6.9 -1.9 6.3 8 8 A M - 0 0 151 -2,-0.4 3,-0.1 1,-0.1 -3,-0.0 -0.980 11.6-123.8-167.4 165.0 9.3 -4.1 8.1 9 9 A A S S+ 0 0 94 -2,-0.3 2,-1.2 1,-0.2 -1,-0.1 0.860 100.0 63.0 -85.1 -40.5 12.7 -5.8 8.0 10 10 A K S S+ 0 0 192 2,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.701 76.4 116.7 -90.1 90.5 11.5 -9.4 8.4 11 11 A G - 0 0 49 -2,-1.2 -3,-0.1 -3,-0.1 0, 0.0 -0.899 52.0-140.5-160.2 126.8 9.4 -10.0 5.3 12 12 A D - 0 0 110 -2,-0.3 3,-0.2 1,-0.1 -2,-0.0 -0.671 18.0-133.9 -89.8 140.6 9.7 -12.3 2.3 13 13 A P S S+ 0 0 129 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.456 102.8 64.0 -69.8 0.8 8.7 -11.1 -1.2 14 14 A K S S+ 0 0 155 2,-0.1 3,-0.1 0, 0.0 -3,-0.0 0.907 79.5 85.7 -89.3 -52.8 6.8 -14.3 -1.6 15 15 A K S S- 0 0 126 -3,-0.2 2,-0.1 1,-0.1 67,-0.0 -0.167 90.2-103.2 -51.8 140.4 4.1 -13.8 1.1 16 16 A P - 0 0 13 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 -0.426 36.3-108.2 -69.8 138.8 1.0 -11.9 -0.1 17 17 A K - 0 0 145 -2,-0.1 3,-0.1 1,-0.1 61,-0.0 -0.439 45.6 -91.7 -68.8 136.9 0.7 -8.3 1.0 18 18 A G - 0 0 33 -2,-0.1 2,-0.2 1,-0.1 -1,-0.1 0.115 56.2 -79.0 -41.8 161.5 -2.0 -7.6 3.6 19 19 A K - 0 0 116 -3,-0.1 2,-0.3 56,-0.1 -1,-0.1 -0.478 48.6-151.1 -70.4 134.0 -5.4 -6.6 2.4 20 20 A M - 0 0 44 -2,-0.2 2,-0.3 54,-0.2 54,-0.1 -0.811 3.0-140.5-108.7 148.9 -5.7 -3.0 1.3 21 21 A S > - 0 0 85 -2,-0.3 4,-1.8 1,-0.1 3,-0.1 -0.700 32.0-101.8-105.9 158.7 -8.8 -0.8 1.5 22 22 A A H > S+ 0 0 13 -2,-0.3 4,-1.8 1,-0.2 -1,-0.1 0.871 121.9 56.7 -41.5 -47.1 -10.1 1.8 -1.0 23 23 A Y H >> S+ 0 0 79 1,-0.2 4,-1.6 2,-0.2 3,-0.7 0.963 103.6 50.6 -51.0 -62.2 -8.8 4.5 1.3 24 24 A A H >> S+ 0 0 29 1,-0.3 4,-3.1 2,-0.2 3,-0.5 0.902 105.5 57.6 -42.4 -54.0 -5.2 3.2 1.3 25 25 A F H 3X S+ 0 0 26 -4,-1.8 4,-3.1 1,-0.3 5,-0.4 0.900 103.4 53.3 -45.0 -49.9 -5.2 3.1 -2.5 26 26 A F H X S+ 0 0 55 -4,-3.1 4,-2.3 2,-0.2 3,-0.8 0.981 112.3 49.3 -58.8 -61.5 -0.6 5.1 -2.1 29 29 A T H 3X S+ 0 0 34 -4,-3.1 4,-1.6 1,-0.3 -1,-0.2 0.862 110.3 53.8 -46.2 -41.7 -1.5 6.3 -5.6 30 30 A C H 3X S+ 0 0 32 -4,-1.6 4,-1.6 -5,-0.4 -1,-0.3 0.889 108.7 48.9 -62.2 -40.6 -1.1 9.8 -4.4 31 31 A R H XX S+ 0 0 97 -4,-1.8 4,-1.9 -3,-0.8 3,-0.6 0.969 106.8 53.0 -64.0 -55.5 2.4 9.0 -3.2 32 32 A E H 3X S+ 0 0 129 -4,-2.3 4,-1.5 1,-0.3 -1,-0.2 0.848 109.9 51.4 -48.6 -37.7 3.6 7.3 -6.4 33 33 A E H 3X S+ 0 0 123 -4,-1.6 4,-1.1 -5,-0.3 -1,-0.3 0.876 104.7 55.4 -68.7 -38.5 2.5 10.4 -8.2 34 34 A H H < + 0 0 74 -4,-3.0 3,-1.2 -5,-0.2 -2,-0.2 -0.576 68.0 149.3-110.3 67.8 9.5 15.2 -7.1 39 39 A P T 3 S+ 0 0 76 0, 0.0 -1,-0.2 0, 0.0 -4,-0.1 0.741 77.2 48.9 -69.8 -23.8 11.5 12.0 -6.9 40 40 A E T 3 S+ 0 0 181 -3,-0.2 -5,-0.1 -5,-0.1 -2,-0.0 -0.071 97.3 93.3-106.5 31.4 14.4 13.8 -5.2 41 41 A V S < S- 0 0 70 -3,-1.2 -3,-0.1 -7,-0.1 2,-0.1 -0.979 75.3-116.1-129.1 138.8 12.2 15.5 -2.6 42 42 A P - 0 0 119 0, 0.0 2,-0.4 0, 0.0 -2,-0.1 -0.347 20.6-155.8 -69.8 149.0 11.3 14.4 0.9 43 43 A V - 0 0 52 -2,-0.1 2,-1.7 4,-0.0 3,-0.1 -0.859 10.3-145.3-132.6 98.8 7.7 13.6 1.8 44 44 A N >> - 0 0 113 -2,-0.4 4,-2.7 1,-0.2 3,-1.3 -0.416 10.9-160.9 -63.8 87.8 6.7 13.9 5.5 45 45 A F H 3> S+ 0 0 109 -2,-1.7 4,-2.8 1,-0.3 5,-0.3 0.837 89.0 61.4 -37.3 -43.6 4.2 11.0 5.6 46 46 A A H 3> S+ 0 0 73 2,-0.2 4,-1.3 1,-0.2 -1,-0.3 0.932 116.8 28.0 -51.6 -52.2 2.8 12.7 8.7 47 47 A E H <> S+ 0 0 114 -3,-1.3 4,-1.7 2,-0.2 5,-0.3 0.952 117.3 57.5 -75.8 -53.1 1.9 15.8 6.8 48 48 A F H X S+ 0 0 19 -4,-2.7 4,-1.4 1,-0.3 -3,-0.2 0.853 110.5 47.3 -45.4 -40.2 1.3 14.2 3.4 49 49 A S H X>S+ 0 0 24 -4,-2.8 4,-2.8 -5,-0.4 5,-0.5 0.911 102.6 61.1 -69.9 -43.8 -1.3 12.0 5.1 50 50 A K H X5S+ 0 0 124 -4,-1.3 4,-0.8 -5,-0.3 -1,-0.2 0.829 111.2 41.8 -52.2 -33.6 -3.0 14.9 6.9 51 51 A K H X5S+ 0 0 121 -4,-1.7 4,-0.5 2,-0.1 -1,-0.3 0.794 119.8 44.0 -84.1 -31.1 -3.7 16.3 3.5 52 52 A C H >X5S+ 0 0 3 -4,-1.4 3,-1.5 -5,-0.3 4,-1.3 0.978 111.9 48.0 -76.5 -62.7 -4.7 12.9 2.0 53 53 A S H >X5S+ 0 0 49 -4,-2.8 4,-1.7 1,-0.3 3,-1.0 0.890 112.7 51.1 -44.7 -48.2 -6.8 11.4 4.7 54 54 A E H 3X> - 0 0 69 1,-0.1 4,-2.1 -2,-0.0 3,-1.7 -0.791 24.4-109.9-102.8 143.4 -17.9 11.8 -2.6 61 61 A G H 3> S+ 0 0 56 -2,-0.3 4,-1.3 1,-0.3 7,-0.1 0.790 121.1 58.9 -35.7 -36.9 -18.9 8.1 -3.0 62 62 A K H 3> S+ 0 0 177 2,-0.2 4,-0.6 1,-0.2 -1,-0.3 0.928 108.8 41.6 -61.9 -46.8 -18.7 8.8 -6.7 63 63 A E H X4 S+ 0 0 93 -3,-1.7 3,-0.9 1,-0.2 4,-0.5 0.917 111.8 54.5 -67.3 -44.7 -15.0 9.8 -6.5 64 64 A K H >X S+ 0 0 59 -4,-2.1 4,-1.6 1,-0.2 3,-1.2 0.768 89.4 82.3 -60.3 -25.3 -14.2 7.0 -4.1 65 65 A S H >X S+ 0 0 61 -4,-1.3 4,-2.6 -5,-0.4 3,-1.1 0.914 82.9 58.6 -44.7 -54.0 -15.6 4.7 -6.7 66 66 A K H S+ 0 0 5 -3,-1.2 4,-1.9 -4,-0.5 -1,-0.3 0.590 111.6 64.1 -89.4 -13.0 -10.7 3.4 -5.5 68 68 A D H X S+ 0 0 70 -4,-0.7 4,-1.3 -5,-0.3 3,-1.0 0.977 115.1 44.0 -66.3 -57.7 -9.8 -1.7 -7.0 71 71 A A H >X S+ 0 0 9 -4,-1.9 4,-1.2 1,-0.3 3,-1.0 0.923 107.1 60.5 -53.5 -48.8 -10.1 -2.3 -3.2 72 72 A K H 3X S+ 0 0 147 -4,-2.8 4,-0.6 1,-0.3 -1,-0.3 0.822 111.1 41.8 -49.3 -33.6 -13.2 -4.5 -3.7 73 73 A A H