==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 06-APR-00 1ERF . COMPND 2 MOLECULE: TRANSMEMBRANE GLYCOPROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR L.M.GORDON,P.W.MOBLEY,R.PILPA,M.A.SHERMAN,A.J.WARING . 23 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2224.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 16 69.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 21.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 47.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 155 0, 0.0 2,-1.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 81.3 4.7 5.7 -2.8 2 2 A V > + 0 0 115 1,-0.2 4,-2.2 2,-0.1 5,-0.2 -0.577 360.0 170.2 -86.7 83.2 4.4 2.7 -0.3 3 3 A G H > S+ 0 0 53 -2,-1.5 4,-2.4 2,-0.2 -1,-0.2 0.939 71.1 43.1 -65.1 -55.3 7.3 3.8 2.2 4 4 A I H > S+ 0 0 154 2,-0.2 4,-2.1 3,-0.2 5,-0.3 0.827 116.3 50.5 -62.0 -34.5 6.8 1.3 5.2 5 5 A G H > S+ 0 0 21 2,-0.2 4,-2.2 3,-0.2 5,-0.4 0.970 112.9 44.5 -64.1 -55.2 6.2 -1.7 2.8 6 6 A A H X S+ 0 0 78 -4,-2.2 4,-1.2 3,-0.2 5,-0.2 0.877 117.6 46.9 -52.6 -42.1 9.4 -0.9 0.7 7 7 A L H X S+ 0 0 142 -4,-2.4 4,-1.9 -5,-0.2 -2,-0.2 0.968 119.1 36.1 -64.9 -57.2 11.5 -0.4 3.9 8 8 A F H X S+ 0 0 63 -4,-2.1 4,-2.4 2,-0.2 -2,-0.2 0.881 118.7 47.8 -68.8 -41.7 10.4 -3.5 6.0 9 9 A L H X S+ 0 0 123 -4,-2.2 4,-2.1 -5,-0.3 5,-0.2 0.896 113.7 47.7 -70.8 -39.4 10.1 -6.1 3.0 10 10 A G H X S+ 0 0 44 -4,-1.2 4,-2.1 -5,-0.4 5,-0.2 0.932 113.4 49.4 -58.3 -48.0 13.6 -5.0 1.6 11 11 A F H X S+ 0 0 102 -4,-1.9 4,-2.3 -5,-0.2 5,-0.2 0.923 111.1 49.5 -48.0 -52.5 15.0 -5.4 5.2 12 12 A L H X S+ 0 0 69 -4,-2.4 4,-2.0 2,-0.2 5,-0.5 0.907 113.0 45.4 -62.6 -45.1 13.3 -8.9 5.6 13 13 A G H < S+ 0 0 70 -4,-2.1 -1,-0.2 2,-0.2 -2,-0.2 0.890 116.2 45.9 -61.8 -43.7 14.8 -10.3 2.2 14 14 A A H < S+ 0 0 94 -4,-2.1 -2,-0.2 -5,-0.2 -1,-0.2 0.859 119.0 41.0 -65.8 -39.8 18.3 -8.9 2.8 15 15 A A H < S- 0 0 48 -4,-2.3 -2,-0.2 -5,-0.2 -3,-0.2 0.844 90.0-146.2 -75.6 -39.2 18.5 -10.2 6.5 16 16 A G < + 0 0 61 -4,-2.0 2,-0.3 -5,-0.2 -3,-0.1 0.896 61.8 88.1 71.3 43.1 16.8 -13.7 6.1 17 17 A S S S- 0 0 72 -5,-0.5 2,-1.8 2,-0.0 -1,-0.2 -0.979 89.2 -92.6-165.3 153.7 15.0 -14.0 9.6 18 18 A T + 0 0 149 -2,-0.3 2,-1.4 1,-0.1 -6,-0.0 -0.447 48.4 175.0 -77.4 78.8 11.6 -13.0 11.2 19 19 A M + 0 0 94 -2,-1.8 -1,-0.1 1,-0.1 2,-0.1 -0.500 40.9 93.8 -93.6 73.2 12.6 -9.5 12.6 20 20 A G - 0 0 34 -2,-1.4 2,-1.5 2,-0.0 -1,-0.1 -0.459 45.3-173.3-162.1 81.7 9.4 -8.0 14.1 21 21 A A - 0 0 108 1,-0.1 2,-1.5 -2,-0.1 -2,-0.0 -0.536 11.6-176.2 -83.2 81.6 8.6 -8.5 17.9 22 22 A R 0 0 203 -2,-1.5 -1,-0.1 1,-0.1 -2,-0.0 -0.507 360.0 360.0 -88.3 79.9 5.0 -7.1 18.0 23 23 A S 0 0 172 -2,-1.5 -1,-0.1 0, 0.0 -2,-0.1 -0.431 360.0 360.0 -84.6 360.0 4.1 -7.2 21.8