==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 27-OCT-05 2ESX . COMPND 2 MOLECULE: ENVELOPE POLYPROTEIN GP160; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR O.ROSEN,M.SHARON,A.O.SAMSON,S.R.QUADT,J.ANGLISTER . 19 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2119.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 9 47.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 15.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 31.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A T 0 0 157 0, 0.0 18,-0.1 0, 0.0 16,-0.0 0.000 360.0 360.0 360.0 77.3 36.1 1.6 10.5 2 4 A R - 0 0 216 1,-0.2 2,-0.3 16,-0.0 16,-0.2 0.542 360.0 -75.3-134.9 -56.3 34.8 -0.9 7.9 3 5 A K - 0 0 99 14,-0.2 -1,-0.2 15,-0.1 2,-0.2 -0.961 23.0-117.9 168.2 180.0 36.3 -0.4 4.5 4 6 A S E +A 16 0A 45 12,-0.6 12,-0.8 -2,-0.3 2,-0.6 -0.624 33.0 170.0-149.2 82.5 36.4 1.6 1.3 5 7 A I E +A 15 0A 66 -2,-0.2 2,-0.4 10,-0.2 10,-0.2 -0.863 9.4 179.5-102.1 123.5 35.4 -0.2 -1.9 6 8 A H + 0 0 159 8,-0.7 2,-0.4 -2,-0.6 8,-0.1 -0.627 20.3 156.1-121.2 71.5 34.8 1.8 -5.1 7 9 A I + 0 0 75 -2,-0.4 6,-0.1 1,-0.1 -2,-0.0 -0.806 3.0 152.2-100.8 138.3 33.9 -0.8 -7.7 8 10 A G S S+ 0 0 57 -2,-0.4 -1,-0.1 4,-0.1 5,-0.0 0.464 71.6 21.3-124.0 -92.9 31.9 0.1 -10.8 9 11 A P S S- 0 0 128 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 0.747 111.2-101.9 -55.2 -23.7 32.2 -1.8 -14.2 10 12 A G S S+ 0 0 57 2,-0.1 3,-0.1 0, 0.0 -3,-0.1 0.536 107.5 83.3 111.0 12.2 33.6 -4.7 -12.2 11 13 A R + 0 0 227 1,-0.1 2,-1.2 0, 0.0 -4,-0.1 0.623 69.0 79.5-115.0 -26.1 37.3 -4.2 -13.0 12 14 A A + 0 0 38 1,-0.1 2,-1.1 2,-0.1 -4,-0.1 -0.712 54.6 176.0 -89.9 93.2 38.3 -1.6 -10.4 13 15 A F + 0 0 152 -2,-1.2 2,-0.8 -6,-0.1 -6,-0.1 -0.675 5.0 175.7 -99.2 79.6 38.7 -3.5 -7.2 14 16 A Y + 0 0 160 -2,-1.1 -8,-0.7 -8,-0.1 2,-0.6 -0.765 2.2 177.5 -90.0 108.1 39.9 -0.9 -4.8 15 17 A T E +A 5 0A 80 -2,-0.8 2,-0.4 -10,-0.2 -10,-0.2 -0.887 6.5 167.7-115.3 100.9 40.3 -2.3 -1.3 16 18 A T E -A 4 0A 75 -12,-0.8 -12,-0.6 -2,-0.6 2,-0.1 -0.932 38.8-108.6-116.3 135.9 41.6 0.2 1.3 17 19 A G - 0 0 61 -2,-0.4 2,-0.9 -14,-0.1 -14,-0.2 -0.338 18.9-138.9 -61.8 136.2 41.6 -0.3 5.0 18 20 A E 0 0 72 -16,-0.2 -1,-0.1 -2,-0.1 -15,-0.1 -0.347 360.0 360.0 -92.5 53.2 39.2 2.0 6.9 19 21 A I 0 0 195 -2,-0.9 -2,-0.1 -18,-0.1 -1,-0.0 -0.698 360.0 360.0 -89.9 360.0 41.6 2.7 9.7