==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/RNA 28-AUG-96 1ETF . COMPND 2 MOLECULE: REV RESPONSE ELEMENT RNA; . SOURCE 2 SYNTHETIC: YES; . AUTHOR J.L.BATTISTE,H.MAO,N.S.RAO,R.TAN,D.R.MUHANDIRAM,L.E.KAY, . 23 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2785.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 20 87.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 18 78.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 33 B D 0 0 155 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 170.3 7.5 2.1 8.2 2 34 B T > - 0 0 81 1,-0.1 4,-2.4 0, 0.0 5,-0.2 -0.883 360.0-102.7-140.9 169.0 6.7 3.3 4.7 3 35 B R H > S+ 0 0 162 -2,-0.3 4,-3.7 2,-0.2 5,-0.2 0.931 122.0 50.4 -60.3 -47.0 3.7 4.2 2.7 4 36 B Q H > S+ 0 0 106 2,-0.2 4,-4.8 1,-0.2 5,-0.4 0.953 110.0 48.8 -55.8 -55.5 3.9 0.9 0.8 5 37 B A H > S+ 0 0 29 1,-0.2 4,-3.4 2,-0.2 -1,-0.2 0.903 115.6 44.7 -52.3 -46.0 4.2 -1.1 4.0 6 38 B R H X S+ 0 0 146 -4,-2.4 4,-4.7 2,-0.2 5,-0.3 0.933 117.3 45.4 -64.2 -46.2 1.2 0.7 5.4 7 39 B R H X S+ 0 0 143 -4,-3.7 4,-3.2 2,-0.2 5,-0.2 0.978 117.2 43.6 -58.2 -58.5 -0.6 0.3 2.0 8 40 B N H X S+ 0 0 81 -4,-4.8 4,-1.0 1,-0.2 -2,-0.2 0.902 121.1 42.5 -53.1 -45.5 0.4 -3.4 1.7 9 41 B R H >X S+ 0 0 150 -4,-3.4 4,-1.9 -5,-0.4 3,-1.0 0.961 113.3 50.5 -66.2 -53.9 -0.4 -3.8 5.4 10 42 B R H 3X S+ 0 0 126 -4,-4.7 4,-3.2 1,-0.3 5,-0.3 0.876 104.9 57.9 -54.7 -42.0 -3.7 -1.8 5.3 11 43 B R H 3X S+ 0 0 100 -4,-3.2 4,-2.5 -5,-0.3 -1,-0.3 0.865 106.7 50.9 -56.5 -35.4 -4.8 -3.8 2.3 12 44 B R H X S+ 0 0 150 -4,-4.2 4,-1.6 1,-0.3 3,-0.7 0.975 109.5 46.6 -57.4 -55.2 -8.9 -9.5 6.1 17 49 B Q H 3X S+ 0 0 92 -4,-3.1 4,-4.2 1,-0.3 5,-0.3 0.786 104.1 68.5 -53.9 -27.2 -11.9 -7.7 7.7 18 50 B R H 3X S+ 0 0 157 -4,-1.3 4,-4.0 -5,-0.2 5,-0.5 0.948 99.1 45.6 -58.6 -52.5 -13.5 -8.4 4.3 19 51 B A H