==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-AUG-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 25-APR-12 4EUW . COMPND 2 MOLECULE: TRANSCRIPTION FACTOR SOX-9; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG),PARTNERSHIP FOR . 72 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5839.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 70.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 41 56.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 103 A P 0 0 188 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 138.4 -10.0 -24.3 -5.2 2 104 A H - 0 0 144 2,-0.0 2,-0.6 0, 0.0 0, 0.0 -0.996 360.0-131.6-149.1 148.2 -9.0 -22.9 -1.7 3 105 A V - 0 0 52 -2,-0.3 2,-0.1 64,-0.0 64,-0.0 -0.921 34.0-134.1 -99.3 120.4 -7.4 -23.9 1.5 4 106 A K - 0 0 168 -2,-0.6 3,-0.1 1,-0.1 -2,-0.0 -0.342 20.0-104.8 -73.8 153.5 -9.5 -22.8 4.5 5 107 A R - 0 0 137 1,-0.1 -1,-0.1 -2,-0.1 3,-0.1 -0.538 45.4-105.3 -70.1 145.3 -8.0 -21.2 7.6 6 108 A P - 0 0 37 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.342 42.0 -92.4 -77.8 156.6 -7.9 -23.5 10.5 7 109 A M - 0 0 70 4,-0.1 52,-0.2 1,-0.1 53,-0.1 -0.486 34.4-135.6 -78.0 132.0 -10.4 -23.2 13.3 8 110 A N > - 0 0 93 -2,-0.2 4,-2.0 1,-0.1 5,-0.2 -0.308 37.6 -91.5 -77.9 167.4 -9.6 -21.1 16.4 9 111 A A H > S+ 0 0 18 1,-0.3 4,-1.6 2,-0.2 5,-0.2 0.806 129.0 48.1 -54.0 -35.1 -10.4 -22.3 20.0 10 112 A F H > S+ 0 0 44 1,-0.2 4,-2.8 2,-0.2 -1,-0.3 0.935 111.9 48.4 -65.6 -49.4 -13.8 -20.6 19.8 11 113 A M H > S+ 0 0 94 2,-0.2 4,-0.7 1,-0.2 -2,-0.2 0.697 110.3 52.1 -68.3 -23.0 -14.7 -22.1 16.4 12 114 A V H X S+ 0 0 24 -4,-2.0 4,-0.6 2,-0.2 3,-0.2 0.926 116.8 37.9 -75.4 -51.9 -13.6 -25.6 17.4 13 115 A W H X S+ 0 0 33 -4,-1.6 4,-1.9 -5,-0.2 3,-0.4 0.833 113.1 58.4 -65.5 -38.1 -15.8 -25.6 20.6 14 116 A A H X S+ 0 0 1 -4,-2.8 4,-2.9 1,-0.2 5,-0.3 0.789 92.1 68.8 -66.4 -29.3 -18.6 -23.7 18.8 15 117 A Q H X S+ 0 0 105 -4,-0.7 4,-1.3 -3,-0.2 -1,-0.2 0.905 111.3 30.1 -60.4 -44.3 -19.0 -26.4 16.1 16 118 A A H X S+ 0 0 54 -4,-0.6 4,-2.7 -3,-0.4 -1,-0.2 0.916 120.3 53.7 -78.9 -46.5 -20.5 -29.1 18.5 17 119 A A H X S+ 0 0 24 -4,-1.9 4,-1.6 1,-0.2 -2,-0.2 0.882 110.2 48.6 -51.5 -47.9 -22.1 -26.5 20.9 18 120 A R H X S+ 0 0 54 -4,-2.9 4,-3.0 2,-0.2 3,-0.2 0.943 113.1 45.9 -55.3 -54.7 -23.9 -24.9 18.0 19 121 A R H X S+ 0 0 124 -4,-1.3 4,-2.0 -5,-0.3 -2,-0.2 0.796 105.6 60.5 -66.7 -32.0 -25.2 -28.2 16.6 20 122 A K H X S+ 0 0 58 -4,-2.7 4,-0.6 2,-0.2 -1,-0.2 0.916 114.0 37.4 -56.5 -46.2 -26.2 -29.4 20.1 21 123 A L H >X S+ 0 0 44 -4,-1.6 4,-2.7 -3,-0.2 3,-1.0 0.933 114.2 54.2 -69.3 -51.9 -28.6 -26.4 20.2 22 124 A A H 3< S+ 0 0 26 -4,-3.0 -2,-0.2 1,-0.2 -3,-0.2 0.808 101.6 60.2 -51.0 -35.5 -29.6 -26.6 16.5 23 125 A D H 3< S+ 0 0 123 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.815 114.8 35.1 -66.7 -31.2 -30.7 -30.3 16.9 24 126 A Q H << S+ 0 0 124 -3,-1.0 -2,-0.2 -4,-0.6 -1,-0.2 0.871 131.0 32.7 -82.4 -43.2 -33.3 -29.2 19.5 25 127 A Y >< + 0 0 110 -4,-2.7 3,-0.9 1,-0.1 -1,-0.2 -0.806 63.2 165.4-121.1 80.7 -34.1 -25.9 17.8 26 128 A P T 3 S+ 0 0 93 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 0.617 75.8 58.4 -75.5 -11.2 -33.9 -26.2 14.0 27 129 A H T 3 S+ 0 0 178 2,-0.1 2,-0.4 -5,-0.0 -5,-0.1 0.470 78.4 109.3 -96.3 -1.6 -35.8 -23.0 13.4 28 130 A L S < S- 0 0 85 -3,-0.9 5,-0.1 -6,-0.1 -3,-0.1 -0.629 77.0-114.8 -77.8 127.7 -33.3 -20.8 15.4 29 131 A H >> - 0 0 138 -2,-0.4 4,-1.8 1,-0.1 3,-0.5 -0.310 13.7-130.5 -65.7 142.1 -31.3 -18.5 13.1 30 132 A N H 3> S+ 0 0 89 1,-0.3 4,-1.6 2,-0.2 -1,-0.1 0.765 109.0 60.4 -69.8 -25.4 -27.5 -19.2 13.0 31 133 A A H 3> S+ 0 0 55 2,-0.2 4,-1.1 1,-0.2 -1,-0.3 0.892 107.5 46.6 -59.9 -40.7 -26.8 -15.5 13.6 32 134 A E H <> S+ 0 0 114 -3,-0.5 4,-1.4 1,-0.2 -2,-0.2 0.865 107.4 55.1 -74.8 -36.7 -28.8 -15.9 16.8 33 135 A L H X S+ 0 0 4 -4,-1.8 4,-3.1 1,-0.2 -1,-0.2 0.859 102.7 58.2 -60.5 -38.2 -27.0 -19.1 17.9 34 136 A S H X S+ 0 0 51 -4,-1.6 4,-3.2 1,-0.2 -1,-0.2 0.888 103.5 52.2 -58.6 -40.0 -23.6 -17.3 17.5 35 137 A K H X S+ 0 0 142 -4,-1.1 4,-1.2 2,-0.2 -1,-0.2 0.866 112.3 45.0 -68.0 -37.0 -24.7 -14.6 20.0 36 138 A T H X S+ 0 0 65 -4,-1.4 4,-2.5 2,-0.2 3,-0.3 0.936 115.3 47.7 -67.3 -48.3 -25.6 -17.4 22.5 37 139 A L H X S+ 0 0 0 -4,-3.1 4,-2.9 1,-0.2 -2,-0.2 0.876 109.2 53.7 -58.9 -41.8 -22.3 -19.2 21.8 38 140 A G H X S+ 0 0 33 -4,-3.2 4,-1.3 2,-0.2 -1,-0.2 0.841 111.0 46.4 -62.4 -35.6 -20.3 -16.0 22.2 39 141 A K H < S+ 0 0 156 -4,-1.2 -2,-0.2 -3,-0.3 -1,-0.2 0.926 113.5 48.0 -71.2 -49.9 -21.9 -15.4 25.6 40 142 A L H >< S+ 0 0 74 -4,-2.5 3,-2.1 1,-0.2 4,-0.4 0.907 109.1 53.3 -57.8 -48.1 -21.3 -19.0 26.8 41 143 A W H >< S+ 0 0 39 -4,-2.9 3,-1.4 1,-0.3 -1,-0.2 0.889 105.2 53.6 -57.9 -42.4 -17.6 -19.1 25.6 42 144 A R T 3< S+ 0 0 75 -4,-1.3 -1,-0.3 1,-0.2 -2,-0.2 0.328 107.0 55.2 -76.3 7.8 -16.9 -15.9 27.6 43 145 A L T < S+ 0 0 134 -3,-2.1 -1,-0.2 2,-0.1 -2,-0.2 0.362 87.7 103.2-112.7 -1.0 -18.3 -17.7 30.7 44 146 A L < - 0 0 42 -3,-1.4 2,-0.1 -4,-0.4 -3,-0.0 -0.483 69.2-118.9 -83.7 154.6 -16.0 -20.8 30.5 45 147 A N > - 0 0 94 -2,-0.2 4,-2.2 1,-0.1 5,-0.2 -0.273 28.2-106.9 -77.7 170.2 -12.9 -21.5 32.7 46 148 A E H > S+ 0 0 88 1,-0.2 4,-2.5 2,-0.2 -1,-0.1 0.912 125.3 49.5 -62.9 -43.3 -9.3 -22.0 31.4 47 149 A S H 4 S+ 0 0 76 2,-0.2 -1,-0.2 1,-0.2 -3,-0.0 0.846 110.2 50.1 -62.0 -38.9 -9.7 -25.7 32.1 48 150 A E H 4 S+ 0 0 91 1,-0.2 4,-0.2 2,-0.1 -2,-0.2 0.902 118.9 37.2 -68.1 -43.4 -13.1 -25.8 30.2 49 151 A K H >X S+ 0 0 51 -4,-2.2 4,-1.7 1,-0.2 3,-1.6 0.746 95.1 88.9 -75.3 -32.9 -11.5 -24.0 27.1 50 152 A R H 3X S+ 0 0 84 -4,-2.5 4,-3.4 1,-0.3 5,-0.3 0.805 84.2 51.8 -37.5 -54.0 -8.1 -25.8 27.3 51 153 A P H 3> S+ 0 0 64 0, 0.0 4,-1.9 0, 0.0 -1,-0.3 0.860 112.9 47.0 -54.9 -33.9 -9.0 -28.8 25.2 52 154 A F H <> S+ 0 0 61 -3,-1.6 4,-2.5 -4,-0.2 -2,-0.2 0.795 113.8 47.1 -80.9 -30.4 -10.3 -26.4 22.4 53 155 A V H X S+ 0 0 71 -4,-1.7 4,-2.6 2,-0.2 5,-0.2 0.897 111.7 50.5 -70.8 -48.9 -7.2 -24.2 22.7 54 156 A E H X S+ 0 0 126 -4,-3.4 4,-2.4 2,-0.2 -2,-0.2 0.886 117.6 41.1 -54.4 -41.8 -4.9 -27.3 22.6 55 157 A E H X S+ 0 0 69 -4,-1.9 4,-3.3 -5,-0.3 5,-0.2 0.910 111.2 54.9 -74.6 -46.3 -6.8 -28.5 19.5 56 158 A A H X S+ 0 0 14 -4,-2.5 4,-1.1 2,-0.2 -2,-0.2 0.863 113.5 44.0 -53.7 -40.0 -7.0 -25.0 18.0 57 159 A E H >X S+ 0 0 88 -4,-2.6 4,-2.9 2,-0.2 3,-0.6 0.948 112.0 51.2 -65.7 -55.0 -3.2 -24.9 18.3 58 160 A R H 3X S+ 0 0 131 -4,-2.4 4,-2.3 1,-0.2 -2,-0.2 0.895 110.6 50.4 -49.1 -45.8 -2.8 -28.4 17.0 59 161 A L H 3X S+ 0 0 31 -4,-3.3 4,-1.4 1,-0.2 -1,-0.2 0.806 114.2 44.5 -62.1 -34.1 -4.9 -27.5 13.9 60 162 A R H < + 0 0 63 -4,-2.8 3,-1.0 -5,-0.2 -1,-0.3 -0.756 66.1 165.9-123.1 81.2 0.6 -25.0 3.9 68 170 A P T 3 S+ 0 0 98 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.671 81.6 39.0 -77.2 -16.0 4.0 -23.3 4.6 69 171 A D T 3 S+ 0 0 155 2,-0.1 2,-0.5 0, 0.0 -5,-0.1 -0.418 80.7 162.8-126.8 54.7 3.2 -20.4 2.2 70 172 A Y < - 0 0 56 -3,-1.0 2,-0.6 -6,-0.1 -3,-0.0 -0.650 32.9-142.2 -76.7 120.6 -0.5 -19.9 3.0 71 173 A K 0 0 85 -2,-0.5 -2,-0.1 1,-0.0 -1,-0.0 -0.771 360.0 360.0 -81.9 119.7 -1.8 -16.5 1.8 72 174 A Y 0 0 190 -2,-0.6 -1,-0.0 -67,-0.0 -2,-0.0 -0.597 360.0 360.0 -82.6 360.0 -4.2 -15.3 4.6