==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PROTEIN 26-APR-00 1EWS . COMPND 2 MOLECULE: RK-1 DEFENSIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; . AUTHOR A.M.MCMANUS,N.F.DAWSON,J.D.WADE,D.J.CRAIK . 32 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2753.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 15 46.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 31.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 9.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 185 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 127.0 -10.5 3.7 0.5 2 2 A P + 0 0 111 0, 0.0 28,-0.5 0, 0.0 2,-0.1 0.879 360.0 45.1 -62.9 -38.7 -8.2 6.6 1.8 3 3 A a S S- 0 0 18 26,-0.2 2,-0.3 10,-0.0 26,-0.2 -0.107 82.5-145.0 -89.8-168.5 -5.3 4.1 1.6 4 4 A S E -A 28 0A 25 24,-1.3 24,-2.0 2,-0.1 2,-0.6 -0.904 11.3-125.9-166.9 135.7 -4.6 1.6 -1.2 5 5 A b E +A 27 0A 69 -2,-0.3 2,-0.3 22,-0.2 22,-0.2 -0.754 44.9 146.1 -89.1 119.9 -3.2 -1.9 -1.7 6 6 A K E -A 26 0A 68 20,-2.5 20,-1.9 -2,-0.6 13,-0.2 -0.970 57.5-121.2-147.6 157.1 -0.2 -2.1 -4.1 7 7 A K S S+ 0 0 106 -2,-0.3 2,-0.3 18,-0.2 -1,-0.1 0.870 106.0 10.1 -66.9 -35.9 3.0 -4.2 -4.4 8 8 A Y S S- 0 0 196 18,-0.1 -1,-0.2 -3,-0.1 20,-0.1 -0.928 88.3-111.8-138.0 158.6 4.9 -0.9 -4.3 9 9 A c - 0 0 38 -2,-0.3 5,-0.1 1,-0.1 -2,-0.0 -0.238 30.0 -98.6 -88.9 179.0 3.8 2.7 -3.4 10 10 A D > - 0 0 36 1,-0.1 3,-0.8 -2,-0.1 -1,-0.1 -0.516 37.9-104.4 -89.7 160.3 3.5 5.9 -5.5 11 11 A P T 3 S+ 0 0 125 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.759 128.5 37.9 -53.5 -26.2 6.2 8.7 -5.5 12 12 A W T 3 S+ 0 0 170 2,-0.0 19,-1.1 18,-0.0 2,-0.3 0.475 112.0 70.0-104.7 -7.0 3.7 10.6 -3.2 13 13 A E E < -B 30 0A 15 -3,-0.8 2,-0.3 17,-0.2 17,-0.2 -0.777 62.2-158.8-112.2 157.2 2.4 7.5 -1.2 14 14 A V E -B 29 0A 69 15,-2.0 15,-1.6 -2,-0.3 -6,-0.0 -0.971 29.0 -90.5-136.1 150.2 4.2 5.4 1.5 15 15 A I E +B 28 0A 107 -2,-0.3 13,-0.2 13,-0.3 3,-0.1 -0.056 39.3 164.0 -54.3 156.1 3.7 1.9 2.9 16 16 A D E - 0 0 116 11,-1.4 2,-0.2 1,-0.3 12,-0.2 0.386 61.9 -21.8-150.2 -18.0 1.5 1.3 6.0 17 17 A G E -B 27 0A 26 10,-1.1 10,-0.6 6,-0.0 2,-0.4 -0.854 70.0 -79.4-168.5-156.3 0.8 -2.4 6.1 18 18 A S + 0 0 52 8,-0.3 8,-0.3 -2,-0.2 5,-0.1 -0.917 40.6 178.6-138.3 108.9 0.6 -5.7 4.2 19 19 A b + 0 0 19 -2,-0.4 6,-1.4 -13,-0.2 2,-0.2 -0.321 38.8 58.5 -97.9-177.8 -2.4 -6.6 2.0 20 20 A G S S- 0 0 45 4,-0.2 -2,-0.1 3,-0.2 3,-0.0 -0.574 97.1 -62.3 95.0-159.4 -3.2 -9.6 -0.3 21 21 A L S S+ 0 0 119 -2,-0.2 -1,-0.1 1,-0.1 2,-0.1 0.929 133.1 23.5 -89.8 -68.9 -3.4 -13.3 0.9 22 22 A F S S- 0 0 176 1,-0.1 -1,-0.1 -3,-0.0 -2,-0.1 -0.117 120.1 -95.8 -90.5 36.4 0.1 -14.2 2.2 23 23 A N S S+ 0 0 97 -5,-0.1 -4,-0.2 1,-0.1 -3,-0.2 0.692 85.5 140.2 57.1 20.3 0.7 -10.5 2.8 24 24 A S + 0 0 59 -6,-0.1 -4,-0.2 2,-0.1 2,-0.1 0.860 58.9 57.0 -59.0 -38.7 2.5 -10.4 -0.6 25 25 A K S S- 0 0 65 -6,-1.4 2,-0.4 -7,-0.1 -18,-0.2 -0.423 85.7-125.1 -89.7 168.7 0.9 -7.0 -1.4 26 26 A Y E -A 6 0A 98 -20,-1.9 -20,-2.5 -8,-0.3 2,-1.4 -0.941 8.4-130.3-121.8 141.3 1.4 -3.9 0.7 27 27 A I E -AB 5 17A 57 -10,-0.6 -11,-1.4 -2,-0.4 -10,-1.1 -0.726 35.5-173.0 -88.6 93.0 -1.2 -1.5 2.3 28 28 A c E -AB 4 15A 0 -24,-2.0 -24,-1.3 -2,-1.4 2,-0.3 -0.815 1.0-170.3 -94.9 120.8 0.2 1.7 1.1 29 29 A a E - B 0 14A 24 -15,-1.6 -15,-2.0 -2,-0.6 -26,-0.2 -0.799 31.4 -84.2-111.3 153.0 -1.4 4.9 2.5 30 30 A R E - B 0 13A 141 -28,-0.5 2,-1.5 -2,-0.3 -17,-0.2 -0.037 40.1-111.0 -51.2 150.0 -1.1 8.6 1.5 31 31 A E 0 0 117 -19,-1.1 -1,-0.1 0, 0.0 -18,-0.0 -0.671 360.0 360.0 -87.9 85.2 1.8 10.7 2.9 32 32 A K 0 0 204 -2,-1.5 -3,-0.0 -3,-0.0 -19,-0.0 -0.888 360.0 360.0-123.3 360.0 -0.3 13.0 5.1