==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ONCOPROTEIN, VIRUS/VIRAL PROTEIN 04-NOV-05 2EWL . COMPND 2 MOLECULE: PROTEIN E7; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN PAPILLOMAVIRUS; . AUTHOR O.OHLENSCHLAGER,M.GORLACH . 56 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4690.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 39 69.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 14.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 17.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 28.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 134 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-165.6 10.4 15.5 -11.1 2 2 A S - 0 0 108 2,-0.1 2,-0.4 0, 0.0 0, 0.0 -0.899 360.0-122.1-150.9 176.5 11.2 13.3 -8.1 3 3 A H + 0 0 170 -2,-0.3 2,-0.2 2,-0.0 3,-0.0 -0.979 44.1 138.2-135.0 110.7 12.3 9.7 -7.5 4 4 A M + 0 0 154 -2,-0.4 -2,-0.1 2,-0.0 0, 0.0 -0.772 24.0 128.5-153.1 98.7 10.3 7.2 -5.3 5 5 A A + 0 0 95 -2,-0.2 5,-0.0 2,-0.1 -1,-0.0 -0.023 30.8 145.2-146.3 23.7 10.2 3.8 -7.0 6 6 A E - 0 0 82 1,-0.1 -2,-0.0 3,-0.1 0, 0.0 -0.341 50.8-100.8 -86.1 156.9 11.4 1.3 -4.5 7 7 A P S S+ 0 0 98 0, 0.0 2,-2.3 0, 0.0 -1,-0.1 -0.213 103.1 17.4 -65.8 169.8 10.3 -2.3 -3.8 8 8 A Q S S+ 0 0 74 21,-0.4 21,-2.8 1,-0.1 2,-1.1 -0.479 102.0 92.8 55.4 -67.5 7.9 -3.1 -0.9 9 9 A R E +A 28 0A 136 -2,-2.3 2,-0.4 19,-0.3 19,-0.3 -0.311 60.9 159.3 -54.0 89.2 6.8 0.7 -0.7 10 10 A H E -A 27 0A 49 17,-2.1 17,-3.0 -2,-1.1 2,-0.8 -0.946 39.2-146.8-129.0 133.2 3.8 0.3 -3.0 11 11 A K E -A 26 0A 124 -2,-0.4 2,-0.9 15,-0.2 15,-0.3 -0.849 18.7-179.5-104.5 94.9 0.6 2.5 -3.4 12 12 A I E -A 25 0A 19 13,-2.6 13,-2.0 -2,-0.8 2,-0.5 -0.842 17.5-152.2 -96.4 98.7 -2.3 0.2 -4.2 13 13 A L E +A 24 0A 96 -2,-0.9 11,-0.3 11,-0.3 2,-0.2 -0.670 30.2 149.0 -84.1 124.3 -5.3 2.5 -4.6 14 14 A C E -A 23 0A 29 9,-3.1 9,-2.2 -2,-0.5 2,-0.3 -0.319 37.3-104.1-120.5-154.9 -8.7 1.1 -3.8 15 15 A V E -A 22 0A 29 7,-0.3 32,-0.9 -2,-0.2 2,-0.8 -0.955 27.4 -93.9-137.2 160.0 -11.8 2.8 -2.4 16 16 A C B >> -b 47 0B 0 5,-2.7 4,-2.5 -2,-0.3 3,-1.0 -0.714 42.5-139.2 -66.0 111.0 -14.0 3.2 0.7 17 17 A C T 34 S+ 0 0 86 30,-3.2 31,-0.1 -2,-0.8 -1,-0.1 0.500 96.2 40.1 -56.9 -11.5 -16.5 0.4 -0.1 18 18 A K T 34 S+ 0 0 124 29,-0.2 -1,-0.2 3,-0.1 30,-0.1 0.568 128.7 24.4-121.2 -14.7 -19.4 2.6 1.1 19 19 A C T <4 S- 0 0 56 -3,-1.0 -2,-0.2 2,-0.1 3,-0.1 0.316 93.3-129.2-125.7 2.8 -18.6 6.2 -0.1 20 20 A D < + 0 0 112 -4,-2.5 -3,-0.1 1,-0.2 2,-0.1 0.560 53.2 156.8 58.1 15.9 -16.3 5.2 -3.1 21 21 A G - 0 0 29 -5,-0.3 -5,-2.7 1,-0.1 2,-0.3 -0.452 50.6 -93.8 -80.1 146.8 -13.7 7.6 -1.8 22 22 A R E -A 15 0A 149 -7,-0.2 2,-0.7 -2,-0.1 -7,-0.3 -0.381 36.7-173.2 -70.9 119.1 -10.1 7.0 -2.9 23 23 A I E -A 14 0A 31 -9,-2.2 -9,-3.1 -2,-0.3 2,-1.1 -0.906 8.8-161.5-109.3 100.1 -8.0 5.0 -0.5 24 24 A E E -A 13 0A 92 -2,-0.7 2,-1.9 -11,-0.3 -11,-0.3 -0.730 16.7-146.8 -71.3 97.2 -4.4 5.0 -1.8 25 25 A L E -A 12 0A 15 -13,-2.0 -13,-2.6 -2,-1.1 2,-1.0 -0.567 14.1-167.1 -71.7 82.9 -3.2 1.9 0.2 26 26 A T E +A 11 0A 71 -2,-1.9 -15,-0.2 -15,-0.3 2,-0.2 -0.728 26.9 155.7 -70.0 102.2 0.4 3.0 0.8 27 27 A V E -A 10 0A 44 -17,-3.0 -17,-2.1 -2,-1.0 2,-0.5 -0.717 50.7-128.3-118.6 172.9 1.8 -0.3 2.0 28 28 A E E +A 9 0A 122 -19,-0.3 2,-0.4 -2,-0.2 -19,-0.3 -0.883 53.0 151.4-121.0 92.9 5.2 -1.9 2.1 29 29 A S - 0 0 12 -21,-2.8 -21,-0.4 -2,-0.5 -2,-0.1 -0.994 44.8-121.9-133.3 131.1 4.4 -5.2 0.4 30 30 A S > - 0 0 58 -2,-0.4 4,-3.2 -23,-0.1 3,-0.4 -0.211 41.9 -97.2 -62.5 162.2 6.5 -7.6 -1.7 31 31 A A H > S+ 0 0 78 1,-0.2 4,-2.5 2,-0.2 5,-0.1 0.846 125.0 47.7 -51.8 -42.4 5.3 -8.4 -5.3 32 32 A E H > S+ 0 0 145 2,-0.2 4,-2.8 1,-0.2 -1,-0.2 0.855 113.4 46.4 -75.2 -34.0 3.7 -11.7 -4.2 33 33 A D H > S+ 0 0 77 -3,-0.4 4,-3.3 2,-0.2 5,-0.3 0.940 114.2 49.4 -67.1 -45.7 1.9 -10.1 -1.2 34 34 A L H X S+ 0 0 49 -4,-3.2 4,-1.7 1,-0.2 -2,-0.2 0.893 114.9 45.2 -58.0 -44.0 0.8 -7.2 -3.4 35 35 A R H X S+ 0 0 160 -4,-2.5 4,-2.2 -5,-0.3 -2,-0.2 0.938 114.4 47.6 -62.8 -53.4 -0.4 -9.8 -6.0 36 36 A T H X S+ 0 0 74 -4,-2.8 4,-2.1 2,-0.2 -2,-0.2 0.942 114.7 44.4 -59.0 -51.1 -2.1 -12.0 -3.3 37 37 A L H X S+ 0 0 26 -4,-3.3 4,-2.8 1,-0.2 5,-0.2 0.848 109.5 59.4 -66.2 -28.5 -3.9 -9.0 -1.7 38 38 A Q H X S+ 0 0 73 -4,-1.7 4,-2.7 -5,-0.3 -1,-0.2 0.944 106.1 47.0 -55.8 -50.9 -4.7 -7.8 -5.2 39 39 A Q H X S+ 0 0 97 -4,-2.2 4,-2.4 1,-0.2 -2,-0.2 0.891 112.3 50.1 -62.5 -41.0 -6.6 -11.1 -5.8 40 40 A L H X>S+ 0 0 89 -4,-2.1 4,-2.8 2,-0.2 5,-2.5 0.933 114.1 43.2 -61.9 -49.1 -8.4 -10.7 -2.4 41 41 A F H <5S+ 0 0 34 -4,-2.8 -2,-0.2 1,-0.2 -1,-0.2 0.841 115.8 49.7 -66.4 -34.1 -9.5 -7.1 -3.1 42 42 A L H <5S+ 0 0 141 -4,-2.7 -2,-0.2 -5,-0.2 -1,-0.2 0.853 119.1 40.3 -66.6 -38.7 -10.4 -8.2 -6.7 43 43 A S H <5S- 0 0 80 -4,-2.4 -2,-0.2 -5,-0.2 -3,-0.2 0.975 137.7 -46.4 -70.9 -67.6 -12.4 -11.1 -5.3 44 44 A T T <5S+ 0 0 116 -4,-2.8 -3,-0.2 -5,-0.1 -4,-0.1 0.496 97.3 104.0-153.9 -36.6 -14.3 -9.9 -2.2 45 45 A L < + 0 0 69 -5,-2.5 2,-0.3 -8,-0.1 0, 0.0 -0.338 37.0 158.5 -66.1 148.0 -12.1 -7.9 0.2 46 46 A S - 0 0 52 -32,-0.1 2,-0.2 -2,-0.0 -30,-0.1 -0.946 24.9-135.6-160.5 168.1 -12.5 -4.1 0.4 47 47 A F B -b 16 0B 99 -32,-0.9 -30,-3.2 -2,-0.3 2,-0.3 -0.615 6.9-136.6-121.0 174.0 -11.7 -1.3 2.9 48 48 A V - 0 0 58 -32,-0.3 -32,-0.1 -2,-0.2 -2,-0.0 -0.961 26.1-110.5-133.2 148.1 -13.4 1.8 4.3 49 49 A C > - 0 0 22 -2,-0.3 4,-3.0 1,-0.1 5,-0.2 -0.459 34.3-109.2 -75.3 157.0 -12.0 5.3 5.0 50 50 A P H > S+ 0 0 105 0, 0.0 4,-1.7 0, 0.0 5,-0.1 0.792 118.7 58.6 -64.2 -27.0 -11.5 6.4 8.7 51 51 A W H >> S+ 0 0 163 2,-0.2 4,-2.1 1,-0.2 3,-0.6 0.987 112.4 38.4 -58.5 -59.9 -14.4 8.9 8.3 52 52 A C H 3> S+ 0 0 6 1,-0.2 4,-3.2 2,-0.2 -1,-0.2 0.916 113.6 56.6 -58.8 -42.9 -16.8 6.1 7.3 53 53 A A H 3< S+ 0 0 67 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.812 112.3 42.8 -58.8 -31.4 -15.2 3.8 9.9 54 54 A T H << S+ 0 0 121 -4,-1.7 -1,-0.2 -3,-0.6 -2,-0.2 0.810 122.9 37.1 -79.7 -36.0 -16.0 6.4 12.6 55 55 A N H < 0 0 106 -4,-2.1 -2,-0.2 1,-0.2 -3,-0.2 0.930 360.0 360.0 -81.8 -49.2 -19.5 7.1 11.3 56 56 A Q < 0 0 185 -4,-3.2 -1,-0.2 -5,-0.2 -2,-0.1 -0.413 360.0 360.0 143.6 360.0 -20.6 3.5 10.3