==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 15-OCT-08 3EWG . COMPND 2 MOLECULE: PUTATIVE TRANSCRIPTION ANTITERMINATION PROTEIN NU . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; . AUTHOR H.H.ZHOU,Q.LIU,Y.X.GAO,M.K.TENG,L.W.NIU . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4925.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 66.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 21.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 25.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 107 0, 0.0 46,-2.6 0, 0.0 2,-0.5 0.000 360.0 360.0 360.0 148.6 -9.7 -11.0 -14.8 2 2 A I E -A 46 0A 31 69,-0.4 69,-2.3 44,-0.2 2,-0.3 -0.876 360.0-172.1-100.6 128.2 -7.0 -9.8 -12.5 3 3 A F E -A 45 0A 5 42,-3.1 42,-2.7 -2,-0.5 2,-0.6 -0.883 19.3-137.4-117.6 149.4 -6.3 -11.8 -9.4 4 4 A A E -A 44 0A 5 63,-0.3 63,-3.1 -2,-0.3 2,-0.6 -0.944 15.4-156.7-104.6 122.4 -4.1 -11.1 -6.4 5 5 A V E -AB 43 66A 0 38,-3.2 38,-2.2 -2,-0.6 2,-0.4 -0.896 15.0-136.6 -98.9 120.7 -2.1 -14.1 -5.2 6 6 A R E +AB 42 65A 94 59,-2.8 58,-2.6 -2,-0.6 59,-1.3 -0.648 33.0 171.3 -80.6 126.1 -1.1 -13.8 -1.5 7 7 A T E - B 0 63A 0 34,-2.6 56,-0.2 -2,-0.4 2,-0.2 -0.803 42.5 -80.6-126.5 167.6 2.5 -14.9 -0.9 8 8 A M > - 0 0 60 54,-2.5 3,-1.9 -2,-0.3 33,-0.3 -0.504 63.6 -96.7 -59.9 137.5 5.1 -14.9 1.8 9 9 A V T 3 S+ 0 0 82 1,-0.2 -1,-0.1 -2,-0.2 31,-0.1 -0.412 111.5 24.5 -61.0 130.6 6.7 -11.4 1.9 10 10 A G T 3 S+ 0 0 48 -2,-0.1 -1,-0.2 -3,-0.1 4,-0.2 0.235 102.4 85.5 97.8 -11.9 9.9 -11.4 -0.1 11 11 A Q <> + 0 0 52 -3,-1.9 4,-2.6 1,-0.1 5,-0.3 0.249 54.0 107.4-102.3 11.1 9.0 -14.4 -2.3 12 12 A E H > S+ 0 0 6 1,-0.2 4,-2.4 2,-0.2 5,-0.1 0.925 83.8 39.3 -58.8 -52.1 7.1 -12.3 -4.9 13 13 A K H > S+ 0 0 121 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.892 114.9 54.0 -65.7 -41.3 9.7 -12.6 -7.7 14 14 A N H > S+ 0 0 102 -4,-0.2 4,-1.6 2,-0.2 -2,-0.2 0.912 113.1 42.6 -57.8 -44.5 10.5 -16.2 -6.9 15 15 A I H X S+ 0 0 3 -4,-2.6 4,-3.0 2,-0.2 -2,-0.2 0.893 110.8 55.1 -72.4 -40.4 6.8 -17.2 -7.2 16 16 A A H X S+ 0 0 14 -4,-2.4 4,-2.4 -5,-0.3 -2,-0.2 0.900 108.4 50.2 -56.9 -43.9 6.3 -15.1 -10.3 17 17 A G H X S+ 0 0 45 -4,-2.3 4,-1.7 2,-0.2 -1,-0.2 0.888 112.1 46.3 -59.6 -43.3 9.1 -17.0 -11.9 18 18 A L H X S+ 0 0 92 -4,-1.6 4,-2.5 2,-0.2 -2,-0.2 0.896 111.7 53.2 -66.4 -41.2 7.6 -20.3 -11.0 19 19 A M H X S+ 0 0 0 -4,-3.0 4,-2.8 2,-0.2 -2,-0.2 0.920 107.9 48.7 -58.0 -50.6 4.2 -19.1 -12.2 20 20 A A H X S+ 0 0 48 -4,-2.4 4,-1.6 2,-0.2 5,-0.2 0.896 113.4 48.0 -58.4 -44.1 5.5 -18.1 -15.7 21 21 A S H X S+ 0 0 70 -4,-1.7 4,-2.0 1,-0.2 -2,-0.2 0.933 115.6 43.5 -60.6 -49.7 7.3 -21.5 -16.0 22 22 A R H X S+ 0 0 58 -4,-2.5 4,-2.8 1,-0.2 6,-0.3 0.848 109.6 57.7 -67.3 -37.9 4.2 -23.5 -14.9 23 23 A A H <>S+ 0 0 2 -4,-2.8 5,-2.0 2,-0.2 4,-0.3 0.897 113.6 36.8 -60.2 -45.7 1.8 -21.4 -17.0 24 24 A E H <5S+ 0 0 146 -4,-1.6 -1,-0.2 3,-0.2 -2,-0.2 0.861 118.1 51.6 -77.3 -35.7 3.5 -22.1 -20.3 25 25 A K H <5S+ 0 0 125 -4,-2.0 -2,-0.2 -5,-0.2 -3,-0.2 0.894 120.4 33.1 -66.3 -44.0 4.4 -25.7 -19.4 26 26 A E T <5S- 0 0 105 -4,-2.8 -1,-0.2 -5,-0.1 -2,-0.2 0.418 107.7-126.3 -92.2 -0.2 0.8 -26.6 -18.4 27 27 A Q T 5 + 0 0 168 -4,-0.3 -3,-0.2 -5,-0.2 -4,-0.1 0.869 44.6 175.2 53.8 44.0 -0.6 -24.3 -21.1 28 28 A L < - 0 0 27 -5,-2.0 2,-2.0 -6,-0.3 -1,-0.2 -0.438 43.7-110.2 -75.1 152.1 -2.8 -22.4 -18.6 29 29 A D + 0 0 81 -2,-0.1 19,-2.2 20,-0.0 2,-0.5 -0.419 66.9 142.1 -83.8 62.5 -4.8 -19.4 -19.7 30 30 A V E +C 47 0A 15 -2,-2.0 17,-0.3 17,-0.2 3,-0.1 -0.938 22.7 175.5-107.9 121.0 -2.6 -17.0 -17.7 31 31 A Y E + 0 0 115 15,-2.6 2,-0.3 -2,-0.5 16,-0.2 0.788 57.6 19.7-101.9 -34.8 -2.0 -13.7 -19.6 32 32 A S E -C 46 0A 55 14,-1.4 14,-2.2 2,-0.0 2,-0.4 -0.986 52.9-168.4-141.6 148.1 -0.1 -11.4 -17.4 33 33 A I E -C 45 0A 63 -2,-0.3 2,-0.4 12,-0.2 12,-0.2 -0.991 4.8-174.6-138.1 129.9 2.1 -11.6 -14.3 34 34 A L E +C 44 0A 60 10,-2.8 10,-2.4 -2,-0.4 2,-0.4 -0.986 5.8 172.9-125.1 123.0 3.3 -8.7 -12.1 35 35 A A + 0 0 31 -2,-0.4 2,-0.3 8,-0.2 8,-0.1 -0.988 8.2 166.8-123.4 139.2 5.8 -9.0 -9.2 36 36 A S > - 0 0 29 6,-0.5 3,-1.5 3,-0.4 6,-0.2 -0.970 42.2-139.9-153.1 134.6 7.2 -6.1 -7.3 37 37 A E T 3 S+ 0 0 122 -2,-0.3 3,-0.1 1,-0.3 -1,-0.1 0.756 108.9 64.0 -60.2 -25.2 9.1 -5.5 -4.1 38 38 A S T 3 S+ 0 0 79 1,-0.2 2,-0.7 -3,-0.1 -1,-0.3 0.700 96.7 60.1 -70.6 -22.8 6.9 -2.4 -3.7 39 39 A L S X S- 0 0 17 -3,-1.5 3,-1.1 3,-0.1 -3,-0.4 -0.805 87.7-153.2-109.2 89.7 3.9 -4.8 -3.5 40 40 A K T 3 - 0 0 126 -2,-0.7 -31,-0.1 1,-0.2 -3,-0.1 -0.427 68.1 -1.9 -70.2 125.5 4.7 -6.9 -0.4 41 41 A G T 3 S+ 0 0 0 -33,-0.3 -34,-2.6 -2,-0.2 2,-0.3 0.653 110.0 95.0 74.5 19.2 3.2 -10.4 -0.2 42 42 A Y E < -A 6 0A 73 -3,-1.1 -6,-0.5 -36,-0.3 2,-0.4 -1.000 48.0-166.9-142.1 142.4 1.3 -10.3 -3.5 43 43 A V E -A 5 0A 0 -38,-2.2 -38,-3.2 -2,-0.3 2,-0.5 -0.998 23.5-139.5-120.5 129.7 1.7 -11.4 -7.1 44 44 A L E -AC 4 34A 15 -10,-2.4 -10,-2.8 -2,-0.4 2,-0.4 -0.791 21.7-174.0 -93.9 131.9 -0.8 -10.0 -9.6 45 45 A V E -AC 3 33A 0 -42,-2.7 -42,-3.1 -2,-0.5 2,-0.5 -0.990 17.7-153.0-131.0 122.4 -2.0 -12.5 -12.2 46 46 A E E +AC 2 32A 74 -14,-2.2 -15,-2.6 -2,-0.4 -14,-1.4 -0.861 34.5 157.5 -89.9 126.7 -4.2 -11.8 -15.2 47 47 A A E - C 0 30A 0 -46,-2.6 -17,-0.2 -2,-0.5 3,-0.1 -0.961 51.7-119.2-147.2 161.1 -6.1 -15.0 -16.2 48 48 A E S S+ 0 0 104 -19,-2.2 2,-0.3 -2,-0.3 -1,-0.1 0.931 95.7 6.2 -66.5 -48.0 -9.2 -16.2 -18.0 49 49 A T > - 0 0 64 -20,-0.3 4,-1.0 1,-0.1 3,-0.2 -0.873 69.7-115.5-132.7 163.5 -10.7 -17.9 -14.9 50 50 A K H > S+ 0 0 82 -2,-0.3 4,-2.5 1,-0.2 3,-0.2 0.852 115.2 65.0 -64.4 -35.3 -10.1 -18.3 -11.2 51 51 A G H > S+ 0 0 36 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.873 95.8 56.1 -52.8 -44.2 -9.6 -22.0 -12.0 52 52 A D H > S+ 0 0 19 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.906 111.1 43.4 -53.8 -46.4 -6.5 -21.2 -14.1 53 53 A V H X S+ 0 0 0 -4,-1.0 4,-2.1 2,-0.2 -2,-0.2 0.870 110.1 55.4 -71.5 -38.1 -4.9 -19.4 -11.1 54 54 A E H X S+ 0 0 99 -4,-2.5 4,-0.6 1,-0.2 -2,-0.2 0.885 113.7 42.0 -59.9 -40.5 -5.9 -22.1 -8.6 55 55 A E H < S+ 0 0 77 -4,-2.3 3,-0.4 -5,-0.2 -2,-0.2 0.857 110.4 58.5 -72.6 -37.2 -4.1 -24.6 -10.9 56 56 A L H < S+ 0 0 0 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.876 114.0 36.1 -57.6 -41.4 -1.2 -22.2 -11.4 57 57 A I H >< S+ 0 0 22 -4,-2.1 3,-2.4 -5,-0.1 -1,-0.2 0.477 84.0 135.8 -96.5 -3.9 -0.5 -22.0 -7.6 58 58 A K T 3< S- 0 0 124 -4,-0.6 -3,-0.1 -3,-0.4 -4,-0.0 -0.186 82.5 -3.6 -51.8 125.5 -1.3 -25.6 -6.7 59 59 A G T 3 S+ 0 0 80 1,-0.2 -1,-0.3 4,-0.1 -2,-0.1 0.599 91.7 151.4 67.7 12.8 1.4 -27.1 -4.4 60 60 A M X - 0 0 23 -3,-2.4 3,-1.4 1,-0.0 -1,-0.2 -0.676 44.1-130.5 -79.2 117.8 3.5 -23.9 -4.5 61 61 A P T 3 S+ 0 0 81 0, 0.0 3,-0.1 0, 0.0 -1,-0.0 -0.405 90.1 22.1 -64.8 143.0 5.5 -23.4 -1.3 62 62 A R T 3 S+ 0 0 128 1,-0.2 -54,-2.5 -55,-0.1 2,-0.5 0.478 93.7 117.2 76.4 7.3 5.2 -19.9 0.2 63 63 A V E < -B 7 0A 26 -3,-1.4 -56,-0.2 -56,-0.2 -1,-0.2 -0.926 42.0-173.5-101.6 127.0 1.8 -19.2 -1.6 64 64 A R E - 0 0 151 -58,-2.6 2,-0.3 -2,-0.5 -57,-0.2 0.811 49.0 -94.9 -87.9 -36.0 -1.1 -18.7 0.8 65 65 A G E -B 6 0A 21 -59,-1.3 -59,-2.8 2,-0.0 2,-0.4 -0.967 49.6 -43.3 151.8-164.1 -3.9 -18.5 -1.8 66 66 A I E -B 5 0A 29 -2,-0.3 -61,-0.2 -61,-0.2 3,-0.1 -0.850 50.7-116.6-104.1 134.2 -6.0 -16.1 -3.9 67 67 A V - 0 0 43 -63,-3.1 -63,-0.3 -2,-0.4 4,-0.0 -0.501 43.6-103.6 -62.0 129.0 -7.5 -12.9 -2.6 68 68 A P S S+ 0 0 109 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 -0.272 86.0 6.3 -55.3 142.9 -11.4 -13.2 -2.8 69 69 A G S S- 0 0 49 -3,-0.1 -65,-0.3 2,-0.0 2,-0.2 -0.277 97.2 -68.4 77.0-166.1 -12.9 -11.3 -5.7 70 70 A T - 0 0 76 -67,-0.1 2,-0.5 -2,-0.1 -67,-0.2 -0.742 37.3-114.2-121.5 169.7 -11.0 -9.5 -8.4 71 71 A I - 0 0 27 -69,-2.3 -69,-0.4 -2,-0.2 2,-0.3 -0.907 19.7-135.9-109.3 127.3 -8.7 -6.5 -8.7 72 72 A A > - 0 0 37 -2,-0.5 3,-2.5 1,-0.1 4,-0.4 -0.665 22.9-125.3 -75.8 134.7 -9.7 -3.4 -10.7 73 73 A I G >> S+ 0 0 114 -2,-0.3 3,-1.1 1,-0.3 4,-0.7 0.760 108.1 69.3 -54.1 -25.5 -6.7 -2.2 -12.7 74 74 A E G 34 S+ 0 0 142 1,-0.2 -1,-0.3 2,-0.2 -3,-0.0 0.734 91.1 60.3 -64.5 -25.3 -7.1 1.2 -11.0 75 75 A E G <> S+ 0 0 101 -3,-2.5 4,-0.8 1,-0.1 -1,-0.2 0.727 96.5 65.2 -72.0 -22.4 -5.9 -0.3 -7.7 76 76 A I T <4 S+ 0 0 27 -3,-1.1 3,-0.5 -4,-0.4 4,-0.5 0.942 92.3 50.7 -74.4 -55.7 -2.5 -1.3 -9.2 77 77 A E T >< S+ 0 0 162 -4,-0.7 3,-1.6 1,-0.2 -1,-0.2 0.879 107.9 51.9 -56.8 -46.5 -0.6 1.9 -10.1 78 78 A P T 34 S+ 0 0 105 0, 0.0 -1,-0.2 0, 0.0 -2,-0.2 0.847 105.0 57.8 -59.6 -33.5 -1.1 3.7 -6.7 79 79 A L T 3< 0 0 98 -4,-0.8 -2,-0.2 -3,-0.5 -3,-0.1 0.573 360.0 360.0 -71.1 -10.1 0.3 0.6 -4.9 80 80 A L < 0 0 98 -3,-1.6 -3,-0.1 -4,-0.5 -4,-0.0 0.713 360.0 360.0-107.0 360.0 3.5 0.9 -7.0