==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 05-MAY-00 1EXY . COMPND 2 MOLECULE: RNA APTAMER, 33-MER; . SOURCE 2 SYNTHETIC: YES; . AUTHOR F.JIANG,A.GORIN,W.HU,A.MAJUMDAR,S.BASKERVILLE,W.XU, . 16 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2617.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 3 18.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 101 B M 0 0 236 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 140.9 60.5 -27.3 -20.0 2 102 B P - 0 0 123 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.056 360.0 -63.2 -66.9 175.1 60.5 -24.0 -18.0 3 103 B K - 0 0 183 1,-0.1 2,-0.4 0, 0.0 0, 0.0 -0.212 56.8-104.6 -60.0 144.8 57.4 -21.9 -16.9 4 104 B T - 0 0 140 -3,-0.1 2,-0.2 1,-0.0 -1,-0.1 -0.629 41.7-169.9 -83.3 128.3 55.1 -20.4 -19.6 5 105 B R - 0 0 199 -2,-0.4 -1,-0.0 1,-0.1 0, 0.0 -0.512 21.2-161.6-108.3 171.0 55.4 -16.6 -20.2 6 106 B R + 0 0 234 1,-0.2 -1,-0.1 -2,-0.2 -2,-0.0 0.656 68.7 71.7-124.3 -69.8 53.6 -13.9 -22.1 7 107 B R S S- 0 0 175 1,-0.1 -1,-0.2 6,-0.0 3,-0.1 -0.372 84.1-130.6 -60.6 126.3 55.6 -10.6 -22.7 8 108 B P - 0 0 44 0, 0.0 2,-0.5 0, 0.0 5,-0.1 0.007 30.4 -54.4 -81.8-177.0 58.2 -11.6 -25.3 9 109 B R > - 0 0 214 1,-0.1 3,-2.3 3,-0.1 4,-0.2 -0.483 59.5-116.6 -65.3 106.4 61.9 -11.4 -26.1 10 110 B R G > S+ 0 0 146 -2,-0.5 3,-0.9 1,-0.3 -1,-0.1 0.475 107.3 74.0 -13.5 -49.1 62.8 -7.8 -25.8 11 111 B S G 3 S+ 0 0 128 1,-0.2 -1,-0.3 3,-0.0 -2,-0.1 0.629 97.7 51.2 -42.7 -30.9 63.8 -7.5 -29.5 12 112 B Q G < S+ 0 0 137 -3,-2.3 2,-0.8 2,-0.1 -1,-0.2 0.811 83.9 93.8 -79.2 -44.6 60.0 -7.6 -30.4 13 113 B R < + 0 0 76 -3,-0.9 -1,-0.0 1,-0.2 -6,-0.0 -0.509 46.3 146.0 -68.1 96.7 58.9 -4.9 -28.0 14 114 B K + 0 0 157 -2,-0.8 -1,-0.2 1,-0.3 -2,-0.1 0.772 55.6 37.8 -94.3 -99.7 59.0 -1.9 -30.2 15 115 B R 0 0 222 1,-0.1 -1,-0.3 0, 0.0 0, 0.0 -0.474 360.0 360.0 -63.3 120.5 56.2 0.7 -29.5 16 116 B P 0 0 203 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.988 360.0 360.0 -69.0 360.0 55.5 1.0 -25.7