==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 08-NOV-05 2EXD . COMPND 2 MOLECULE: NFED SHORT HOMOLOG; . SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; . AUTHOR Y.KUWAHARA,A.OHNO,T.MORII,H.TOCHIO,M.SHIRAKAWA,H.HIROAKI . 74 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5986.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 55.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 22 29.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 14.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 72 A R 0 0 269 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -62.6 9.5 -26.0 16.3 2 73 A R + 0 0 206 2,-0.1 0, 0.0 0, 0.0 0, 0.0 0.827 360.0 115.5 -91.3 -38.7 6.6 -23.7 17.0 3 74 A E - 0 0 164 1,-0.1 2,-0.6 2,-0.1 0, 0.0 0.055 63.3-134.5 -33.6 134.4 8.2 -21.5 19.7 4 75 A T + 0 0 119 1,-0.1 -1,-0.1 2,-0.0 -2,-0.1 -0.889 29.2 172.5-105.0 119.8 8.5 -17.9 18.4 5 76 A T + 0 0 113 -2,-0.6 2,-0.5 2,-0.0 -1,-0.1 -0.358 39.0 116.8-120.0 51.4 11.8 -16.1 18.9 6 77 A D + 0 0 126 1,-0.1 -2,-0.0 0, 0.0 0, 0.0 -0.931 32.6 177.1-124.9 108.2 11.2 -12.9 17.0 7 78 A I - 0 0 167 -2,-0.5 2,-0.3 1,-0.2 -1,-0.1 0.897 30.1-161.7 -73.6 -42.2 11.2 -9.6 18.8 8 79 A G + 0 0 53 1,-0.0 -1,-0.2 3,-0.0 2,-0.2 -0.704 30.7 162.7 97.7-148.5 10.7 -7.5 15.7 9 80 A G + 0 0 84 -2,-0.3 2,-0.2 1,-0.2 -1,-0.0 -0.560 53.4 77.3 129.1 -70.3 11.4 -3.8 15.4 10 81 A G - 0 0 64 -2,-0.2 -1,-0.2 1,-0.1 0, 0.0 -0.554 64.8-145.4 -79.8 140.2 11.7 -2.9 11.8 11 82 A K + 0 0 71 -2,-0.2 2,-1.1 -3,-0.1 3,-0.2 0.182 68.1 113.8 -87.3 17.6 8.5 -2.5 9.8 12 83 A Y + 0 0 153 1,-0.2 -2,-0.1 2,-0.1 -1,-0.1 -0.750 24.0 151.5 -94.4 94.2 10.3 -3.9 6.7 13 84 A T - 0 0 52 -2,-1.1 -1,-0.2 0, 0.0 -2,-0.0 0.521 40.9-147.6 -97.3 -9.0 8.7 -7.2 5.9 14 85 A F + 0 0 138 47,-0.2 -2,-0.1 -3,-0.2 45,-0.1 0.878 70.0 105.9 40.7 49.3 9.5 -7.0 2.2 15 86 A E > + 0 0 67 3,-0.0 4,-0.5 4,-0.0 -1,-0.1 0.549 38.6 95.3-125.3 -24.4 6.3 -8.9 1.5 16 87 A L T >4 + 0 0 1 2,-0.1 3,-2.0 19,-0.1 40,-0.4 0.800 59.5 109.7 -39.3 -34.6 4.0 -6.2 0.2 17 88 A K T 34 S+ 0 0 103 1,-0.3 40,-0.2 38,-0.1 3,-0.1 -0.260 93.7 4.9 -50.2 112.0 5.2 -7.4 -3.2 18 89 A G T 34 S+ 0 0 40 38,-2.4 -1,-0.3 1,-0.4 -2,-0.1 -0.023 107.6 113.1 100.5 -30.5 2.1 -9.1 -4.7 19 90 A K << - 0 0 109 -3,-2.0 37,-2.2 -4,-0.5 2,-0.5 -0.283 68.0-117.4 -72.6 161.0 -0.2 -8.1 -1.8 20 91 A V E -A 55 0A 74 35,-0.2 16,-0.4 -3,-0.1 2,-0.3 -0.879 32.6-175.7-105.7 129.9 -3.0 -5.7 -2.3 21 92 A G E -A 54 0A 5 33,-3.3 33,-2.5 -2,-0.5 2,-0.4 -0.786 20.6-122.5-121.2 165.3 -3.1 -2.3 -0.5 22 93 A K E -AB 53 34A 87 12,-1.9 12,-2.7 -2,-0.3 2,-1.0 -0.871 22.5-122.0-109.9 140.9 -5.5 0.6 -0.1 23 94 A V E + B 0 33A 1 29,-1.4 28,-2.2 -2,-0.4 29,-0.3 -0.689 32.6 170.6 -83.2 102.7 -4.7 4.2 -0.9 24 95 A V E S+ 0 0 44 8,-1.3 2,-0.3 -2,-1.0 -1,-0.2 0.693 71.3 0.1 -83.2 -20.7 -5.3 6.2 2.2 25 96 A K E - B 0 32A 97 7,-1.6 7,-3.1 -3,-0.1 2,-0.4 -0.963 62.8-149.5-166.1 149.5 -3.8 9.3 0.7 26 97 A I + 0 0 47 -2,-0.3 2,-0.3 5,-0.2 5,-0.2 -0.959 15.9 170.1-128.2 145.3 -2.2 10.6 -2.5 27 98 A A > - 0 0 20 -2,-0.4 3,-1.1 1,-0.1 -2,-0.0 -0.940 38.1-129.8-156.5 130.3 0.5 13.2 -3.2 28 99 A E T 3 S+ 0 0 165 -2,-0.3 3,-0.1 1,-0.3 -1,-0.1 0.900 114.3 50.7 -41.9 -53.7 2.4 14.2 -6.3 29 100 A D T 3 S- 0 0 143 1,-0.2 -1,-0.3 -3,-0.1 2,-0.3 0.847 136.1 -24.2 -55.4 -35.5 5.7 14.0 -4.3 30 101 A H < - 0 0 65 -3,-1.1 2,-0.3 2,-0.0 -1,-0.2 -0.932 62.3-121.0-174.8 152.1 4.6 10.5 -3.1 31 102 A Y E - C 0 42A 21 11,-3.0 11,-1.4 -2,-0.3 2,-0.7 -0.741 18.1-134.6-103.7 151.7 1.5 8.3 -2.6 32 103 A L E +BC 25 41A 25 -7,-3.1 -7,-1.6 -2,-0.3 -8,-1.3 -0.876 24.7 178.2-109.5 103.2 0.4 6.7 0.7 33 104 A V E -BC 23 40A 0 7,-0.9 7,-2.3 -2,-0.7 2,-1.1 -0.897 22.8-143.5-109.0 109.4 -0.7 3.1 0.2 34 105 A E E +BC 22 39A 68 -12,-2.7 -12,-1.9 -2,-0.7 2,-0.4 -0.571 28.8 178.5 -73.2 100.0 -1.7 1.4 3.4 35 106 A V E > - C 0 38A 1 3,-3.2 3,-1.2 -2,-1.1 -14,-0.1 -0.881 65.0 -10.3-108.8 136.1 -0.4 -2.2 3.0 36 107 A E T 3 S- 0 0 92 -2,-0.4 -1,-0.2 -16,-0.4 3,-0.1 0.761 135.0 -51.4 51.4 25.0 -0.7 -4.9 5.6 37 108 A G T 3 S+ 0 0 51 1,-0.2 2,-0.3 -3,-0.2 -1,-0.3 0.784 121.3 105.0 83.7 29.1 -1.9 -2.2 7.9 38 109 A D E < S-C 35 0A 66 -3,-1.2 -3,-3.2 -5,-0.1 2,-0.5 -0.967 70.8-124.4-146.2 125.9 1.0 0.1 7.2 39 110 A K E -C 34 0A 116 -2,-0.3 -5,-0.3 -5,-0.3 2,-0.1 -0.560 36.3-171.4 -71.6 116.1 1.2 3.3 5.1 40 111 A W E -C 33 0A 2 -7,-2.3 -7,-0.9 -2,-0.5 2,-0.6 -0.408 26.9-111.3-100.4 179.0 4.0 2.8 2.5 41 112 A I E +C 32 0A 54 21,-0.7 23,-0.4 -9,-0.2 2,-0.2 -0.818 51.2 150.4-117.5 91.2 5.6 5.3 0.1 42 113 A A E -C 31 0A 0 -11,-1.4 -11,-3.0 -2,-0.6 2,-0.4 -0.740 31.5-144.4-116.8 166.1 4.7 4.4 -3.5 43 114 A Y - 0 0 101 -2,-0.2 2,-0.4 -13,-0.2 23,-0.3 -0.994 9.1-167.1-136.0 130.1 4.3 6.4 -6.7 44 115 A S - 0 0 8 -2,-0.4 4,-0.1 21,-0.1 23,-0.1 -0.958 19.5-150.4-119.9 132.4 1.9 5.8 -9.6 45 116 A D S S+ 0 0 174 -2,-0.4 2,-0.7 1,-0.1 -1,-0.1 0.714 88.6 69.8 -69.2 -20.4 2.1 7.5 -13.0 46 117 A E S S- 0 0 82 -3,-0.0 22,-0.1 1,-0.0 -1,-0.1 -0.884 99.2-111.9-105.3 111.2 -1.7 7.2 -13.2 47 118 A K - 0 0 187 -2,-0.7 2,-0.1 1,-0.1 -2,-0.1 -0.066 39.0-149.7 -39.5 125.6 -3.5 9.5 -10.8 48 119 A L - 0 0 19 -4,-0.1 2,-0.4 4,-0.0 -1,-0.1 -0.461 3.8-125.3 -97.9 172.6 -5.2 7.4 -8.1 49 120 A S > - 0 0 63 -2,-0.1 3,-2.7 -24,-0.1 -26,-0.2 -0.964 34.3 -93.3-123.9 137.8 -8.4 7.9 -6.1 50 121 A L T 3 S+ 0 0 133 -2,-0.4 -26,-0.2 1,-0.3 3,-0.1 -0.206 116.7 18.4 -47.6 120.0 -8.9 7.9 -2.4 51 122 A G T 3 S+ 0 0 34 -28,-2.2 2,-0.3 1,-0.3 -1,-0.3 0.509 90.1 148.7 93.0 5.8 -9.9 4.3 -1.5 52 123 A D < - 0 0 42 -3,-2.7 -29,-1.4 -29,-0.3 2,-0.3 -0.583 47.2-125.0 -77.5 131.7 -8.7 2.9 -4.8 53 124 A R E +A 22 0A 141 -2,-0.3 16,-1.9 16,-0.2 2,-0.3 -0.603 35.2 174.5 -79.4 132.2 -7.4 -0.7 -4.5 54 125 A V E -AD 21 68A 0 -33,-2.5 -33,-3.3 -2,-0.3 2,-0.4 -0.998 22.2-142.4-141.0 143.5 -3.9 -1.3 -5.8 55 126 A M E -AD 20 67A 80 12,-1.6 12,-1.4 -2,-0.3 2,-0.5 -0.894 27.2-114.8-109.1 133.7 -1.5 -4.2 -5.8 56 127 A V E - D 0 66A 2 -37,-2.2 -38,-2.4 -40,-0.4 10,-0.3 -0.508 26.9-174.0 -67.8 114.9 2.2 -3.9 -5.3 57 128 A V E - 0 0 62 8,-3.0 2,-0.3 -2,-0.5 -1,-0.2 0.847 68.3 -13.1 -77.6 -35.9 4.0 -4.9 -8.5 58 129 A D E - D 0 65A 64 7,-0.8 7,-1.5 -41,-0.0 2,-0.5 -0.983 57.9-136.6-163.3 156.3 7.5 -4.7 -7.0 59 130 A V E - D 0 64A 6 -2,-0.3 5,-0.3 5,-0.2 3,-0.0 -0.977 7.7-172.3-125.8 122.8 9.3 -3.4 -3.9 60 131 A D - 0 0 111 3,-2.6 2,-0.9 -2,-0.5 4,-0.1 -0.263 66.8 -79.3-104.2 44.5 12.7 -1.6 -4.1 61 132 A G S S+ 0 0 49 2,-0.2 -47,-0.2 1,-0.2 -1,-0.0 -0.766 120.6 11.8 102.1 -91.5 13.3 -1.5 -0.4 62 133 A L S S+ 0 0 84 -2,-0.9 -21,-0.7 -50,-0.1 2,-0.4 0.340 123.0 70.7-103.2 3.5 11.2 1.3 1.1 63 134 A K - 0 0 88 -23,-0.1 -3,-2.6 -21,-0.0 2,-0.4 -0.957 56.5-172.0-124.7 141.6 9.2 1.8 -2.1 64 135 A L E -D 59 0A 0 -2,-0.4 -5,-0.2 -23,-0.4 2,-0.1 -0.912 23.2-132.2-136.8 108.5 6.5 -0.4 -3.7 65 136 A K E -D 58 0A 71 -7,-1.5 -8,-3.0 -2,-0.4 -7,-0.8 -0.366 26.0-155.6 -59.7 126.1 5.1 0.3 -7.1 66 137 A V E -D 56 0A 5 -23,-0.3 2,-0.4 -10,-0.3 -10,-0.2 -0.846 9.0-164.3-109.0 143.7 1.3 0.1 -7.0 67 138 A K E -D 55 0A 119 -12,-1.4 -12,-1.6 -2,-0.4 -23,-0.0 -0.967 28.1-113.9-131.2 117.6 -1.0 -0.6 -10.0 68 139 A R E -D 54 0A 159 -2,-0.4 -14,-0.2 -14,-0.2 -16,-0.0 -0.135 36.4-160.4 -46.9 135.1 -4.7 0.1 -9.9 69 140 A I - 0 0 52 -16,-1.9 -16,-0.2 0, 0.0 -1,-0.1 -0.960 17.2-111.1-127.0 142.9 -6.7 -3.2 -10.1 70 141 A P - 0 0 105 0, 0.0 -16,-0.0 0, 0.0 3,-0.0 -0.349 38.3-106.1 -69.7 147.6 -10.3 -3.8 -11.1 71 142 A P > - 0 0 61 0, 0.0 3,-0.5 0, 0.0 0, 0.0 -0.208 25.1-112.8 -69.8 162.9 -12.8 -5.0 -8.5 72 143 A Q T 3 S+ 0 0 194 1,-0.2 0, 0.0 0, 0.0 0, 0.0 0.975 112.4 65.0 -60.5 -58.2 -14.1 -8.6 -8.3 73 144 A L T 3 0 0 164 -3,-0.0 -1,-0.2 0, 0.0 0, 0.0 0.787 360.0 360.0 -34.5 -36.2 -17.7 -7.7 -9.3 74 145 A E < 0 0 183 -3,-0.5 0, 0.0 0, 0.0 0, 0.0 -0.645 360.0 360.0 -79.7 360.0 -16.1 -6.8 -12.6