==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/DNA 08-NOV-05 2EXF . COMPND 2 MOLECULE: NUCLEOCAPSID PROTEIN* (NC*); . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.BOURBIGOT,S.BOUAZIZ,N.MORELLET . 44 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3888.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 10 22.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 12 A N 0 0 170 0, 0.0 2,-0.2 0, 0.0 9,-0.0 0.000 360.0 360.0 360.0 156.6 -13.1 -9.3 -1.6 2 13 A V - 0 0 67 10,-0.1 10,-1.0 11,-0.0 2,-0.5 -0.806 360.0-124.2-160.9 111.2 -9.9 -7.3 -2.1 3 14 A K - 0 0 132 -2,-0.2 7,-0.2 7,-0.2 2,-0.2 -0.465 29.1-130.9 -61.6 111.7 -7.8 -5.8 0.8 4 15 A C > - 0 0 4 5,-1.5 4,-1.4 -2,-0.5 9,-0.1 -0.463 7.3-149.9 -62.3 127.3 -7.5 -2.0 0.1 5 16 A F T 4 S+ 0 0 106 -2,-0.2 -1,-0.1 2,-0.2 8,-0.1 0.921 93.4 53.5 -63.4 -45.6 -3.8 -0.9 0.4 6 17 A N T 4 S+ 0 0 34 1,-0.1 -1,-0.2 3,-0.1 8,-0.1 0.928 132.8 3.8 -56.9 -56.9 -4.8 2.6 1.5 7 18 A C T 4 S- 0 0 63 2,-0.2 -2,-0.2 12,-0.1 -1,-0.1 0.708 89.0-126.2-105.9 -29.9 -7.2 1.6 4.5 8 19 A G < + 0 0 34 -4,-1.4 -4,-0.3 1,-0.4 -2,-0.1 -0.342 66.8 125.2 108.9 -47.0 -6.9 -2.2 4.7 9 20 A K - 0 0 142 -6,-0.2 -5,-1.5 1,-0.1 -1,-0.4 -0.109 55.8-125.1 -55.7 141.6 -10.7 -2.8 4.6 10 21 A E S S+ 0 0 83 -7,-0.2 -7,-0.2 1,-0.2 -1,-0.1 -0.040 78.9 61.4 -78.7 177.6 -12.0 -5.2 1.9 11 22 A G S S+ 0 0 64 1,-0.1 2,-0.3 0, 0.0 -1,-0.2 0.399 105.4 40.5 85.6 -0.1 -14.6 -4.8 -0.9 12 23 A H S S- 0 0 44 -10,-1.0 2,-0.2 -3,-0.3 -10,-0.1 -0.966 75.1-115.1-167.9 167.5 -12.7 -2.0 -2.7 13 24 A T > - 0 0 40 -2,-0.3 4,-2.6 -9,-0.1 -9,-0.2 -0.533 37.4 -90.2-115.4 175.1 -9.3 -0.8 -3.7 14 25 A A T 4 S+ 0 0 14 1,-0.2 5,-0.2 2,-0.2 -10,-0.1 0.872 125.1 46.4 -49.9 -49.5 -6.7 2.0 -3.1 15 26 A R T 4 S+ 0 0 223 1,-0.2 -1,-0.2 3,-0.1 6,-0.1 0.903 115.0 46.4 -61.5 -45.1 -8.2 4.2 -5.9 16 27 A N T 4 S+ 0 0 111 2,-0.1 -2,-0.2 0, 0.0 -1,-0.2 0.856 85.6 115.7 -65.9 -40.0 -11.8 3.6 -4.8 17 28 A C < - 0 0 14 -4,-2.6 2,-2.1 1,-0.2 4,-0.1 -0.040 66.1-139.2 -40.9 119.0 -11.0 4.3 -1.1 18 29 A R S S+ 0 0 255 2,-0.1 -1,-0.2 3,-0.0 -2,-0.1 -0.499 78.1 81.4 -80.5 66.9 -12.8 7.4 0.2 19 30 A A S S- 0 0 45 -2,-2.1 2,-0.1 -5,-0.2 -13,-0.1 -0.935 94.7 -85.2-164.9 149.5 -9.7 8.4 2.2 20 31 A P - 0 0 124 0, 0.0 2,-0.1 0, 0.0 -2,-0.1 -0.458 53.1-132.7 -64.1 132.7 -6.4 10.1 1.4 21 32 A R - 0 0 175 -2,-0.1 2,-0.2 1,-0.1 -6,-0.0 -0.315 19.2 -92.5 -89.7 171.3 -3.9 7.5 0.0 22 33 A K - 0 0 77 1,-0.1 -1,-0.1 -2,-0.1 4,-0.1 -0.529 19.9-161.9 -89.2 148.0 -0.3 6.8 0.9 23 34 A K S S+ 0 0 134 -2,-0.2 -1,-0.1 2,-0.1 3,-0.1 0.909 71.9 48.4 -89.5 -58.6 2.8 8.3 -0.9 24 35 A G S S- 0 0 4 1,-0.2 11,-0.3 5,-0.1 7,-0.3 0.258 110.1 -36.6 -74.3-164.1 5.5 5.9 0.2 25 36 A C - 0 0 0 5,-1.8 4,-0.3 8,-0.5 -1,-0.2 -0.382 46.2-156.9 -64.0 127.1 5.9 2.1 0.2 26 37 A W S S+ 0 0 95 -2,-0.1 -1,-0.1 2,-0.1 -2,-0.1 0.969 87.7 31.8 -69.4 -56.2 2.6 0.4 1.1 27 38 A K S S+ 0 0 97 1,-0.2 -1,-0.0 2,-0.1 -2,-0.0 0.995 130.0 30.7 -69.6 -68.2 4.1 -2.9 2.4 28 39 A C S S- 0 0 48 1,-0.1 2,-0.2 2,-0.1 -1,-0.2 0.788 95.5-141.2 -67.6 -28.5 7.5 -2.0 3.9 29 40 A G + 0 0 33 -4,-0.3 -5,-0.1 1,-0.3 -1,-0.1 -0.273 57.5 123.7 103.5 -45.2 6.2 1.5 4.9 30 41 A K - 0 0 121 -2,-0.2 -5,-1.8 -6,-0.1 -1,-0.3 -0.217 51.5-140.8 -57.5 134.8 9.3 3.5 4.1 31 42 A E S S+ 0 0 119 -7,-0.3 -1,-0.1 1,-0.2 3,-0.1 -0.089 73.6 72.9 -89.1-173.0 8.9 6.4 1.7 32 43 A G S S+ 0 0 77 -2,-0.0 2,-0.3 1,-0.0 -1,-0.2 0.420 107.5 44.4 81.3 1.6 11.0 7.7 -1.2 33 44 A H S S- 0 0 46 -3,-0.3 -8,-0.5 5,-0.0 2,-0.1 -0.942 82.1-119.0-167.7 151.2 10.0 4.6 -3.1 34 45 A Q > - 0 0 106 -2,-0.3 4,-2.6 -10,-0.1 -9,-0.3 -0.360 36.4-102.3 -88.7 172.8 6.8 2.6 -3.8 35 46 A M T 4 S+ 0 0 30 -11,-0.3 -10,-0.1 2,-0.2 -1,-0.1 0.877 126.6 54.2 -61.4 -38.6 6.0 -1.1 -2.9 36 47 A K T 4 S+ 0 0 167 1,-0.2 -1,-0.2 6,-0.0 -11,-0.0 0.937 114.4 39.1 -55.0 -53.3 6.7 -1.8 -6.6 37 48 A D T 4 S+ 0 0 94 2,-0.0 -2,-0.2 5,-0.0 -1,-0.2 0.839 90.0 125.2 -67.2 -42.7 10.1 -0.1 -6.4 38 49 A C < - 0 0 8 -4,-2.6 -3,-0.1 1,-0.1 -4,-0.0 0.246 37.1-175.7 -29.7 135.3 11.0 -1.4 -2.9 39 50 A T + 0 0 120 2,-0.1 3,-0.3 3,-0.0 -1,-0.1 0.321 66.3 81.5-113.9 -2.0 14.3 -3.3 -2.3 40 51 A E S S- 0 0 115 1,-0.2 2,-1.1 0, 0.0 0, 0.0 0.916 113.2 -4.8 -72.9-100.4 13.7 -4.2 1.3 41 52 A R S S+ 0 0 145 3,-0.0 2,-0.7 2,-0.0 3,-0.4 -0.593 88.6 165.0 -95.7 66.8 11.4 -7.3 1.8 42 53 A Q + 0 0 88 -2,-1.1 -6,-0.0 -3,-0.3 -3,-0.0 -0.819 36.0 87.1 -92.4 112.2 10.8 -7.5 -2.0 43 54 A A 0 0 87 -2,-0.7 -1,-0.2 1,-0.1 -2,-0.0 0.114 360.0 360.0-166.5 -49.5 9.3 -10.9 -2.9 44 55 A N 0 0 133 -3,-0.4 -1,-0.1 0, 0.0 -3,-0.0 0.016 360.0 360.0-154.0 360.0 5.5 -10.5 -2.6