==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 06-MAY-00 1EYF . COMPND 2 MOLECULE: ADA REGULATORY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR Y.LIN,V.DOTSCH,T.WINTNER,K.PEARISO,L.C.MYERS,J.E.PENNER- . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7914.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 39 42.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 9.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 15.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 234 0, 0.0 2,-1.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -85.4 -12.2 13.7 20.1 2 2 A K + 0 0 209 2,-0.0 2,-0.2 0, 0.0 0, 0.0 -0.702 360.0 62.2 -92.2 76.0 -9.5 16.3 20.7 3 3 A K + 0 0 176 -2,-1.0 3,-0.1 1,-0.1 0, 0.0 -0.859 37.4 162.2 168.2 151.7 -7.0 13.8 22.2 4 4 A A - 0 0 51 -2,-0.2 2,-0.1 1,-0.1 -1,-0.1 0.119 43.1-126.8 172.9 47.6 -5.0 10.6 21.3 5 5 A T S S+ 0 0 127 1,-0.1 2,-0.4 2,-0.1 -1,-0.1 -0.071 86.8 0.4 47.2 -96.1 -2.1 10.0 23.8 6 6 A C - 0 0 73 -2,-0.1 5,-0.2 2,-0.1 -1,-0.1 -0.929 54.5-178.1-133.4 104.5 1.0 9.7 21.4 7 7 A L + 0 0 92 -2,-0.4 -2,-0.1 4,-0.1 -1,-0.1 0.034 36.4 151.8 -89.7 22.3 0.4 10.0 17.6 8 8 A T >> - 0 0 75 1,-0.1 4,-1.6 3,-0.1 3,-0.6 -0.137 65.9-108.9 -53.6 148.1 4.2 9.3 17.0 9 9 A D H 3> S+ 0 0 74 1,-0.2 4,-1.7 2,-0.2 -1,-0.1 0.694 116.0 75.5 -54.3 -21.7 5.4 7.6 13.8 10 10 A D H >> S+ 0 0 112 2,-0.2 4,-0.8 1,-0.2 3,-0.6 0.991 102.3 31.1 -41.7 -75.9 6.0 4.7 16.2 11 11 A Q H <> S+ 0 0 84 -3,-0.6 4,-3.1 2,-0.3 5,-0.3 0.717 108.6 70.8 -76.3 -21.6 2.3 3.7 16.6 12 12 A R H 3X S+ 0 0 83 -4,-1.6 4,-1.3 1,-0.2 -1,-0.3 0.966 107.6 38.1 -42.0 -58.1 1.6 4.9 12.9 13 13 A W H S+ 0 0 30 -4,-3.1 5,-1.8 1,-0.2 -2,-0.2 0.796 121.4 46.6 -57.6 -32.1 -1.5 0.3 13.3 16 16 A V H <5S+ 0 0 0 -4,-1.3 -2,-0.2 -5,-0.3 -1,-0.2 0.685 112.2 48.3 -89.3 -26.6 0.3 -0.4 9.9 17 17 A L H <5S+ 0 0 82 -4,-1.8 -2,-0.2 -6,-0.2 -3,-0.2 0.844 104.7 59.4 -76.0 -40.7 2.2 -3.5 11.3 18 18 A A T <5S- 0 0 78 -4,-2.4 -2,-0.2 -5,-0.1 -1,-0.2 0.677 111.7-128.4 -57.8 -21.9 -1.1 -4.9 12.8 19 19 A R T 5 - 0 0 101 21,-0.3 22,-0.2 1,-0.2 -3,-0.2 0.763 26.4-161.1 76.5 30.2 -2.2 -4.8 9.1 20 20 A D > < - 0 0 60 -5,-1.8 3,-1.5 1,-0.2 21,-0.3 -0.181 5.3-168.1 -51.2 89.2 -5.4 -2.8 10.2 21 21 A P T 3 S+ 0 0 87 0, 0.0 3,-0.2 0, 0.0 -1,-0.2 0.642 78.9 53.4 -62.7 -18.2 -7.4 -3.6 6.9 22 22 A N T 3 S+ 0 0 134 1,-0.2 -2,-0.1 18,-0.0 4,-0.1 0.012 72.7 105.9-110.8 21.4 -10.2 -1.0 7.6 23 23 A A X> + 0 0 0 -3,-1.5 4,-1.3 2,-0.1 3,-0.7 0.182 41.7 131.8 -95.8 14.4 -7.9 2.1 8.1 24 24 A D T 34 S+ 0 0 107 -3,-0.2 4,-0.1 1,-0.2 33,-0.1 -0.548 79.7 17.8 -59.0 126.5 -8.9 3.5 4.7 25 25 A G T 34 S+ 0 0 68 2,-0.4 -1,-0.2 -2,-0.3 3,-0.1 -0.061 110.4 83.4 90.1 -29.0 -9.7 7.2 5.3 26 26 A E T <4 S- 0 0 122 -3,-0.7 2,-0.3 1,-0.3 -2,-0.2 0.849 111.7 -61.8 -70.0 -38.4 -7.8 7.0 8.7 27 27 A F < - 0 0 21 -4,-1.3 -2,-0.4 2,-0.0 -1,-0.3 -0.958 44.1-120.6-178.0-175.0 -4.6 7.7 6.8 28 28 A V E -A 55 0A 11 27,-1.1 27,-1.5 -2,-0.3 2,-0.3 -0.876 16.6-141.6-130.1 170.1 -2.1 6.4 4.1 29 29 A F E -AB 54 38A 4 9,-1.7 9,-2.3 -2,-0.3 2,-0.5 -0.993 11.2-150.3-136.1 143.9 1.7 5.5 4.2 30 30 A A E -AB 53 37A 1 23,-2.9 23,-1.3 -2,-0.3 2,-1.1 -0.944 7.1-157.5-128.1 108.7 4.3 6.2 1.4 31 31 A V E >>> -AB 52 36A 13 5,-1.3 3,-1.6 -2,-0.5 4,-1.5 -0.725 10.0-164.5 -89.5 92.2 7.4 4.1 0.6 32 32 A R T 345S+ 0 0 168 19,-1.5 -1,-0.2 -2,-1.1 20,-0.1 0.668 80.9 68.1 -52.1 -23.2 9.6 6.7 -1.1 33 33 A T T 345S+ 0 0 113 18,-0.4 -1,-0.3 1,-0.2 19,-0.1 0.800 115.0 24.0 -77.9 -33.2 11.9 3.9 -2.5 34 34 A T T <45S- 0 0 89 -3,-1.6 -1,-0.2 2,-0.2 -2,-0.2 0.475 103.8-129.2-100.2 -13.0 9.2 2.5 -4.9 35 35 A G T <5 + 0 0 24 -4,-1.5 32,-1.5 1,-0.3 2,-0.3 0.764 66.6 127.0 63.3 29.2 7.4 5.9 -5.0 36 36 A I E < -Bc 31 67A 44 -5,-0.9 -5,-1.3 30,-0.2 2,-0.3 -0.759 47.4-148.6-105.2 158.3 4.0 4.1 -4.2 37 37 A F E +Bc 30 68A 3 30,-1.5 32,-2.1 -2,-0.3 36,-0.3 -0.915 19.3 175.9-128.0 157.5 1.5 4.8 -1.4 38 38 A C E -B 29 0A 8 -9,-2.3 -9,-1.7 -2,-0.3 23,-0.1 -0.792 34.8 -99.0-144.7 171.5 -0.8 2.4 0.6 39 39 A R > - 0 0 60 -11,-0.2 3,-1.0 -2,-0.2 -11,-0.1 -0.756 55.8 -97.3 -93.3 152.5 -3.4 1.8 3.4 40 40 A P T 3 S+ 0 0 0 0, 0.0 -21,-0.3 0, 0.0 -20,-0.2 0.670 115.4 77.5 -42.4 -23.6 -1.8 0.4 6.7 41 41 A S T 3 + 0 0 20 -21,-0.3 2,-0.7 -22,-0.2 -25,-0.1 0.226 54.6 153.3 -78.6 9.0 -2.9 -3.2 5.6 42 42 A C < - 0 0 18 -3,-1.0 4,-0.1 1,-0.2 -23,-0.0 -0.203 22.2-173.4 -60.6 94.7 -0.0 -3.7 3.0 43 43 A R + 0 0 144 -2,-0.7 3,-0.2 2,-0.1 -1,-0.2 0.731 52.0 96.1 -71.0 -30.7 0.0 -7.5 3.2 44 44 A A S S- 0 0 31 1,-0.2 3,-0.1 -3,-0.0 27,-0.0 -0.310 107.2 -64.2 -56.7 144.2 3.2 -8.0 1.0 45 45 A R S S- 0 0 241 1,-0.1 -1,-0.2 -2,-0.0 -2,-0.1 -0.075 76.0-105.1 -45.5 106.8 6.4 -8.4 3.0 46 46 A H - 0 0 47 -3,-0.2 2,-0.4 -4,-0.1 -1,-0.1 0.159 19.8-134.1 -45.7 144.8 6.6 -4.9 4.7 47 47 A A - 0 0 40 -3,-0.1 -1,-0.1 1,-0.1 4,-0.0 -0.904 48.6 -87.3 -94.4 130.1 9.0 -2.1 3.6 48 48 A L > - 0 0 113 -2,-0.4 3,-1.4 1,-0.1 4,-0.2 0.174 21.8-122.3 -47.6 148.4 10.6 -0.6 6.7 49 49 A R G > S+ 0 0 99 1,-0.2 3,-1.0 2,-0.2 -1,-0.1 0.734 111.5 69.4 -45.4 -30.9 9.0 2.3 8.7 50 50 A E G 3 S+ 0 0 148 1,-0.3 -1,-0.2 -19,-0.0 -2,-0.1 0.636 104.7 36.1 -77.9 -18.3 12.3 4.1 7.9 51 51 A N G < S+ 0 0 65 -3,-1.4 -19,-1.5 -20,-0.0 -18,-0.4 0.229 110.8 84.3-106.3 5.0 11.5 4.5 4.2 52 52 A V E < -A 31 0A 10 -3,-1.0 2,-0.3 -21,-0.2 -21,-0.2 -0.923 52.3-178.1-125.9 132.3 7.8 5.1 4.9 53 53 A S E -A 30 0A 38 -23,-1.3 -23,-2.9 -2,-0.4 2,-0.3 -0.949 21.4-120.9-136.6 155.9 5.8 8.3 5.8 54 54 A F E +A 29 0A 38 -2,-0.3 -25,-0.2 -25,-0.2 2,-0.2 -0.791 25.1 174.3-115.0 133.2 2.1 8.9 6.7 55 55 A Y E -A 28 0A 43 -27,-1.5 -27,-1.1 -2,-0.3 3,-0.1 -0.544 43.0-111.3-112.6 179.3 -0.7 11.2 5.1 56 56 A A S S- 0 0 57 -29,-0.2 2,-0.2 1,-0.2 -31,-0.2 0.825 93.7 -20.6 -74.6 -43.8 -4.5 11.8 5.6 57 57 A N S > S- 0 0 58 -30,-0.1 4,-1.3 -31,-0.1 3,-0.5 -0.889 73.2 -85.1-160.2 179.9 -5.3 10.2 2.2 58 58 A A H > S+ 0 0 14 -2,-0.2 4,-1.4 1,-0.2 8,-0.2 0.615 118.5 64.7 -78.8 -18.9 -4.0 9.2 -1.3 59 59 A S H > S+ 0 0 80 2,-0.2 4,-1.4 3,-0.2 -1,-0.2 0.794 104.5 47.1 -70.3 -33.7 -4.6 12.8 -2.8 60 60 A E H > S+ 0 0 105 -3,-0.5 4,-0.8 2,-0.2 -2,-0.2 0.889 113.1 48.0 -65.0 -45.8 -1.9 14.0 -0.3 61 61 A A H <>S+ 0 0 0 -4,-1.3 5,-1.7 2,-0.2 -2,-0.2 0.766 110.6 51.0 -68.2 -28.6 0.2 11.0 -1.5 62 62 A L H ><5S+ 0 0 111 -4,-1.4 3,-1.1 3,-0.2 -1,-0.2 0.821 104.1 57.7 -69.0 -38.7 -0.7 12.2 -5.1 63 63 A A H 3<5S+ 0 0 84 -4,-1.4 -2,-0.2 1,-0.2 -1,-0.2 0.732 102.4 54.5 -59.8 -27.3 0.5 15.7 -3.8 64 64 A A T 3<5S- 0 0 46 -4,-0.8 -1,-0.2 -5,-0.0 -2,-0.2 0.544 122.5-113.7 -82.3 -12.1 3.9 13.8 -3.1 65 65 A G T < 5 + 0 0 65 -3,-1.1 -3,-0.2 1,-0.2 2,-0.1 0.820 69.9 136.5 81.9 37.0 3.8 12.7 -6.8 66 66 A F < - 0 0 38 -5,-1.7 -30,-0.2 -8,-0.2 -1,-0.2 -0.460 48.2-123.9-103.7 175.0 3.3 8.9 -6.1 67 67 A R E -c 36 0A 195 -32,-1.5 -30,-1.5 -2,-0.1 2,-0.3 -0.899 35.4 -91.6-119.0 149.6 1.1 6.1 -7.7 68 68 A P E -c 37 0A 66 0, 0.0 -30,-0.2 0, 0.0 -32,-0.0 -0.484 47.9-108.3 -63.1 125.4 -1.5 3.7 -5.9 69 69 A C > - 0 0 14 -32,-2.1 4,-1.1 -2,-0.3 6,-0.5 -0.205 22.1-121.4 -56.5 140.4 0.1 0.4 -4.8 70 70 A K T 4 S+ 0 0 119 1,-0.2 6,-0.2 2,-0.1 -1,-0.1 0.431 110.1 29.5 -68.8 -1.6 -1.0 -2.7 -6.9 71 71 A R T 4 S+ 0 0 77 4,-0.2 -1,-0.2 5,-0.1 6,-0.2 0.609 124.1 38.8-123.7 -37.9 -2.5 -4.4 -3.6 72 72 A C T 4 S+ 0 0 9 -35,-0.2 -2,-0.1 3,-0.1 -34,-0.1 0.899 112.4 38.7 -95.1 -54.3 -3.6 -1.5 -1.3 73 73 A Q S < S+ 0 0 89 -4,-1.1 -3,-0.1 -36,-0.3 -35,-0.1 0.961 136.5 8.6 -86.3 -57.0 -5.2 1.4 -3.1 74 74 A P S S- 0 0 80 0, 0.0 -1,-0.1 0, 0.0 -4,-0.1 0.759 98.7-120.4 -79.3 -32.6 -7.4 -0.2 -6.0 75 75 A D + 0 0 113 -6,-0.5 2,-0.5 1,-0.1 -4,-0.2 0.904 46.1 173.1 75.9 62.3 -6.8 -3.8 -4.6 76 76 A K + 0 0 136 -7,-0.3 2,-0.2 -6,-0.2 -5,-0.1 -0.320 5.3 166.3-103.2 46.0 -5.2 -4.8 -8.0 77 77 A A + 0 0 51 -2,-0.5 -6,-0.1 -6,-0.2 3,-0.0 -0.464 14.2 179.5 -68.5 130.7 -4.0 -8.4 -6.9 78 78 A N + 0 0 69 -2,-0.2 -1,-0.1 2,-0.1 -7,-0.0 -0.215 36.4 121.6-126.7 34.9 -3.0 -10.6 -9.9 79 79 A P S S+ 0 0 96 0, 0.0 -1,-0.0 0, 0.0 -2,-0.0 0.977 73.3 32.4 -73.6 -88.5 -1.9 -13.9 -8.2 80 80 A R S S+ 0 0 215 3,-0.0 3,-0.1 2,-0.0 -2,-0.1 0.837 93.8 111.7 -23.2 -70.8 -4.0 -17.0 -9.5 81 81 A Q S S- 0 0 87 1,-0.1 -3,-0.0 2,-0.0 0, 0.0 0.278 82.1 -91.3 -16.0 123.3 -4.3 -15.4 -13.1 82 82 A H - 0 0 146 1,-0.1 2,-0.3 0, 0.0 -1,-0.1 -0.039 19.9-142.1 -28.5 134.5 -2.4 -17.2 -15.9 83 83 A R - 0 0 191 -3,-0.1 -1,-0.1 0, 0.0 -2,-0.0 -0.517 39.1-158.3 -97.3 56.0 1.1 -15.9 -16.7 84 84 A L - 0 0 132 -2,-0.3 -3,-0.0 2,-0.1 0, 0.0 0.157 27.6 -90.6 -42.4 154.3 0.3 -16.5 -20.4 85 85 A D - 0 0 151 1,-0.1 0, 0.0 2,-0.0 0, 0.0 0.819 48.3-132.4 -39.9 -81.8 3.1 -17.0 -22.9 86 86 A K + 0 0 192 1,-0.4 -1,-0.1 0, 0.0 -2,-0.1 -0.250 59.8 119.2 167.0 -48.5 3.7 -13.3 -24.1 87 87 A I - 0 0 156 1,-0.1 -1,-0.4 2,-0.0 2,-0.0 -0.026 60.6-121.6 -53.2 137.5 3.9 -13.0 -27.9 88 88 A T S S+ 0 0 97 1,-0.1 -1,-0.1 2,-0.0 0, 0.0 -0.280 79.3 41.8 -77.2 163.3 1.2 -10.7 -29.5 89 89 A H + 0 0 176 1,-0.1 2,-0.2 -2,-0.0 -1,-0.1 0.971 55.6 163.6 59.4 93.1 -1.4 -11.8 -32.1 90 90 A A + 0 0 97 1,-0.1 -1,-0.1 2,-0.0 -2,-0.0 -0.665 11.1 148.5-137.5 77.6 -2.8 -15.3 -31.3 91 91 A C 0 0 128 -2,-0.2 -1,-0.1 1,-0.1 -2,-0.0 0.863 360.0 360.0 -80.4 -42.8 -6.0 -15.9 -33.3 92 92 A R 0 0 311 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.300 360.0 360.0 72.0 360.0 -5.5 -19.8 -33.7