==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 16-MAY-00 1F0M . COMPND 2 MOLECULE: EPHRIN TYPE-B RECEPTOR 2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.D.THANOS,S.FAHAM,K.E.GOODWILL,D.CASCIO,M.PHILLIPS, . 71 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4701.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 73.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 15.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 45.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 8 A Y 0 0 192 0, 0.0 2,-0.7 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 -81.1 4.2 54.2 28.3 2 9 A T + 0 0 102 1,-0.2 8,-0.0 61,-0.0 61,-0.0 -0.496 360.0 137.9 -93.3 52.3 5.6 53.6 24.9 3 10 A S + 0 0 89 -2,-0.7 2,-0.5 1,-0.1 -1,-0.2 0.389 65.0 79.4 -83.6 8.8 9.2 54.5 25.6 4 11 A F - 0 0 32 1,-0.1 -1,-0.1 -3,-0.1 6,-0.0 -0.960 60.2-169.0-123.4 114.8 9.7 51.4 23.5 5 12 A N S S+ 0 0 144 -2,-0.5 2,-0.3 1,-0.0 -1,-0.1 0.716 82.9 44.6 -70.1 -14.8 9.3 51.5 19.8 6 13 A T S > S- 0 0 61 1,-0.1 4,-2.0 24,-0.1 5,-0.1 -0.902 77.8-123.8-136.5 159.8 9.4 47.7 20.3 7 14 A V H > S+ 0 0 9 22,-0.3 4,-2.9 -2,-0.3 5,-0.3 0.886 112.6 55.6 -61.1 -42.9 8.2 44.6 22.3 8 15 A D H > S+ 0 0 74 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.904 108.1 49.5 -57.1 -39.3 11.8 43.6 23.2 9 16 A E H > S+ 0 0 67 2,-0.2 4,-3.7 1,-0.2 -1,-0.2 0.954 111.3 48.9 -62.8 -51.0 12.4 47.0 24.7 10 17 A W H X S+ 0 0 7 -4,-2.0 4,-2.1 2,-0.3 6,-0.3 0.920 110.3 48.7 -55.4 -48.2 9.3 46.8 26.7 11 18 A L H <>S+ 0 0 0 -4,-2.9 5,-3.8 1,-0.2 6,-0.5 0.891 114.4 49.2 -59.8 -36.4 10.1 43.3 28.0 12 19 A E H ><5S+ 0 0 90 -4,-1.9 3,-2.2 4,-0.3 -2,-0.3 0.912 106.3 55.0 -67.3 -45.6 13.5 44.8 28.8 13 20 A A H 3<5S+ 0 0 53 -4,-3.7 -2,-0.2 1,-0.3 -1,-0.2 0.880 110.4 44.8 -56.9 -39.7 12.0 47.8 30.6 14 21 A I T 3<5S- 0 0 19 -4,-2.1 -1,-0.3 -5,-0.2 -2,-0.2 0.120 119.7-112.7 -92.0 21.0 10.0 45.6 32.9 15 22 A K T < 5S+ 0 0 160 -3,-2.2 3,-0.2 1,-0.1 -3,-0.2 0.717 89.3 115.4 57.2 24.8 13.1 43.5 33.4 16 23 A M > < + 0 0 11 -5,-3.8 3,-2.3 -6,-0.3 -4,-0.3 0.083 25.4 126.6-108.3 21.2 11.5 40.6 31.6 17 24 A G G > + 0 0 7 -6,-0.5 3,-2.1 1,-0.3 4,-0.4 0.769 55.0 80.0 -49.5 -30.0 14.0 40.6 28.6 18 25 A Q G 3 S+ 0 0 116 1,-0.3 -1,-0.3 -3,-0.2 4,-0.2 0.667 93.0 52.6 -54.2 -14.8 14.7 36.9 29.2 19 26 A Y G <> S+ 0 0 25 -3,-2.3 4,-2.8 1,-0.1 3,-0.5 0.560 74.5 97.7-100.7 -9.4 11.5 36.2 27.4 20 27 A K H <> S+ 0 0 58 -3,-2.1 4,-3.0 1,-0.3 5,-0.3 0.895 85.6 53.2 -44.4 -48.4 12.0 38.2 24.2 21 28 A E H > S+ 0 0 149 -4,-0.4 4,-2.1 1,-0.2 -1,-0.3 0.926 112.7 44.3 -53.2 -47.2 13.1 35.0 22.4 22 29 A S H 4 S+ 0 0 38 -3,-0.5 -2,-0.2 -4,-0.2 4,-0.2 0.918 114.5 47.5 -64.5 -49.4 9.9 33.3 23.6 23 30 A F H ><>S+ 0 0 0 -4,-2.8 5,-1.8 2,-0.2 3,-1.4 0.931 113.1 47.8 -58.4 -51.7 7.5 36.2 22.7 24 31 A A H ><5S+ 0 0 41 -4,-3.0 3,-2.6 1,-0.3 -2,-0.2 0.968 108.1 53.8 -54.8 -57.6 9.0 36.7 19.2 25 32 A N T 3<5S+ 0 0 130 -4,-2.1 -1,-0.3 -5,-0.3 -2,-0.2 0.470 108.1 53.5 -59.6 -1.1 8.9 33.1 18.3 26 33 A A T < 5S- 0 0 48 -3,-1.4 -1,-0.3 -4,-0.2 -2,-0.2 0.296 118.5-104.7-115.7 4.3 5.2 33.0 19.2 27 34 A G T < 5S+ 0 0 44 -3,-2.6 2,-1.8 -4,-0.2 3,-0.2 0.476 80.4 129.4 87.7 0.8 4.0 35.9 17.0 28 35 A F < + 0 0 30 -5,-1.8 -1,-0.2 1,-0.2 -3,-0.1 -0.549 26.9 136.0 -89.6 74.4 3.7 38.5 19.8 29 36 A T + 0 0 97 -2,-1.8 -22,-0.3 -5,-0.1 2,-0.3 0.280 54.9 43.4-106.2 4.5 5.8 41.0 17.9 30 37 A S S > S- 0 0 51 -3,-0.2 4,-1.9 -24,-0.1 5,-0.1 -0.919 80.2-116.4-141.7 168.8 3.8 44.3 18.3 31 38 A F H > S+ 0 0 40 -2,-0.3 4,-2.6 2,-0.2 5,-0.1 0.767 109.3 69.5 -78.8 -23.1 2.1 46.0 21.2 32 39 A D H 4 S+ 0 0 111 2,-0.2 4,-0.2 1,-0.2 -1,-0.2 0.968 111.7 27.9 -56.5 -56.4 -1.2 45.6 19.4 33 40 A V H >4 S+ 0 0 41 1,-0.2 3,-2.1 2,-0.2 4,-0.4 0.924 118.6 57.8 -72.5 -44.7 -1.2 41.9 19.8 34 41 A V H >< S+ 0 0 0 -4,-1.9 3,-2.0 1,-0.3 -2,-0.2 0.886 101.0 57.7 -51.4 -44.8 0.8 41.8 23.1 35 42 A S T 3< S+ 0 0 5 -4,-2.6 -1,-0.3 1,-0.3 -2,-0.2 0.596 104.0 53.3 -64.5 -11.7 -1.7 44.1 24.8 36 43 A Q T < S+ 0 0 118 -3,-2.1 -1,-0.3 -4,-0.2 -2,-0.2 0.467 83.2 122.7-100.7 -4.2 -4.4 41.5 24.0 37 44 A M < - 0 0 4 -3,-2.0 2,-0.2 -4,-0.4 -3,-0.0 -0.286 43.5-164.1 -61.9 140.8 -2.4 38.7 25.7 38 45 A M >> - 0 0 110 1,-0.0 4,-1.9 22,-0.0 3,-0.7 -0.662 41.7 -87.3-115.8 174.5 -4.1 36.8 28.5 39 46 A M H 3> S+ 0 0 61 1,-0.2 4,-2.5 -2,-0.2 5,-0.2 0.891 127.0 59.0 -49.2 -46.1 -2.7 34.5 31.1 40 47 A E H 3> S+ 0 0 109 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.881 106.9 46.7 -48.5 -51.7 -3.1 31.5 28.7 41 48 A D H <> S+ 0 0 43 -3,-0.7 4,-2.5 2,-0.2 5,-0.2 0.862 109.2 54.2 -59.8 -41.5 -0.8 33.3 26.1 42 49 A I H <>S+ 0 0 0 -4,-1.9 5,-2.8 1,-0.2 -2,-0.2 0.904 110.6 46.7 -63.6 -39.0 1.8 34.1 28.8 43 50 A L H ><5S+ 0 0 86 -4,-2.5 3,-0.7 3,-0.2 -2,-0.2 0.906 111.8 51.9 -67.1 -43.2 1.9 30.4 29.7 44 51 A R H 3<5S+ 0 0 211 -4,-2.2 -2,-0.2 1,-0.3 -1,-0.2 0.878 102.3 54.6 -62.8 -42.9 2.2 29.4 26.1 45 52 A V T 3<5S- 0 0 12 -4,-2.5 -1,-0.3 -5,-0.1 -2,-0.2 0.565 130.3-107.4 -65.2 -7.1 5.1 31.7 25.2 46 53 A G T < 5 + 0 0 37 -3,-0.7 2,-0.9 -5,-0.2 -3,-0.2 0.681 64.5 157.0 94.2 18.5 6.3 29.7 28.2 47 54 A V < + 0 0 0 -5,-2.8 -1,-0.2 -6,-0.2 -2,-0.1 -0.683 8.0 163.4 -79.1 110.9 6.3 32.0 31.2 48 55 A T + 0 0 111 -2,-0.9 2,-0.4 -4,-0.0 -1,-0.2 0.612 39.0 95.2-105.2 -14.7 6.2 29.6 34.1 49 56 A L > - 0 0 93 1,-0.1 4,-2.1 2,-0.0 3,-0.5 -0.692 69.5-138.6 -81.3 128.4 7.2 31.6 37.1 50 57 A A H > S+ 0 0 75 -2,-0.4 4,-2.2 1,-0.2 5,-0.2 0.882 101.1 51.8 -51.9 -48.8 4.3 33.1 39.1 51 58 A G H > S+ 0 0 51 1,-0.2 4,-2.7 2,-0.2 -1,-0.2 0.854 111.0 47.6 -61.6 -36.0 5.9 36.4 39.7 52 59 A H H > S+ 0 0 41 -3,-0.5 4,-2.6 2,-0.2 5,-0.3 0.888 107.7 54.0 -69.4 -44.4 6.8 36.9 36.0 53 60 A Q H X S+ 0 0 35 -4,-2.1 4,-3.1 2,-0.2 5,-0.2 0.938 115.1 43.6 -55.1 -46.0 3.3 35.9 34.8 54 61 A K H X S+ 0 0 139 -4,-2.2 4,-3.4 2,-0.2 5,-0.3 0.969 111.9 48.8 -64.8 -58.7 2.0 38.6 37.1 55 62 A K H X S+ 0 0 86 -4,-2.7 4,-1.6 1,-0.2 -1,-0.2 0.922 119.1 42.6 -47.9 -47.6 4.5 41.4 36.4 56 63 A I H X S+ 0 0 0 -4,-2.6 4,-2.8 2,-0.2 5,-0.2 0.950 113.4 48.9 -65.8 -52.0 3.9 40.8 32.7 57 64 A L H X S+ 0 0 34 -4,-3.1 4,-2.6 -5,-0.3 -2,-0.2 0.908 112.9 49.1 -56.3 -46.0 0.1 40.4 32.9 58 65 A N H X S+ 0 0 72 -4,-3.4 4,-1.5 2,-0.2 -1,-0.2 0.826 110.6 49.9 -65.4 -32.4 -0.2 43.6 35.0 59 66 A S H X S+ 0 0 28 -4,-1.6 4,-2.7 -5,-0.3 -1,-0.2 0.937 110.8 50.0 -69.8 -45.2 2.0 45.6 32.6 60 67 A I H X S+ 0 0 3 -4,-2.8 4,-3.4 1,-0.2 5,-0.3 0.920 107.6 54.6 -57.3 -44.4 -0.1 44.4 29.7 61 68 A Q H X S+ 0 0 101 -4,-2.6 4,-1.9 1,-0.2 -1,-0.2 0.875 110.6 44.5 -61.5 -35.3 -3.2 45.4 31.5 62 69 A V H X S+ 0 0 81 -4,-1.5 4,-2.2 2,-0.2 -1,-0.2 0.897 114.6 50.6 -70.8 -41.0 -1.8 49.0 32.0 63 70 A M H X S+ 0 0 19 -4,-2.7 4,-2.7 1,-0.2 5,-0.2 0.950 113.1 45.0 -59.2 -54.0 -0.7 49.0 28.3 64 71 A R H X S+ 0 0 65 -4,-3.4 4,-2.3 1,-0.2 -1,-0.2 0.899 112.6 49.5 -60.5 -44.3 -4.0 47.8 27.1 65 72 A A H X S+ 0 0 57 -4,-1.9 4,-0.9 -5,-0.3 -1,-0.2 0.894 113.1 48.1 -65.7 -35.9 -6.0 50.3 29.2 66 73 A Q H >X S+ 0 0 52 -4,-2.2 4,-1.4 2,-0.2 3,-0.9 0.925 109.1 51.5 -69.2 -44.9 -3.8 53.1 28.1 67 74 A M H 3< S+ 0 0 48 -4,-2.7 -2,-0.2 1,-0.3 -1,-0.2 0.927 106.8 57.6 -56.9 -41.9 -4.1 52.2 24.4 68 75 A N H >< S+ 0 0 84 -4,-2.3 3,-0.7 -5,-0.2 -1,-0.3 0.775 100.4 55.1 -61.7 -25.4 -7.9 52.2 25.0 69 76 A Q H << S+ 0 0 159 -3,-0.9 2,-1.1 -4,-0.9 -1,-0.2 0.954 111.1 43.2 -70.8 -50.0 -7.9 55.8 26.2 70 77 A I T 3< 0 0 135 -4,-1.4 -1,-0.3 1,-0.2 -2,-0.1 -0.359 360.0 360.0 -80.0 43.6 -6.2 57.1 23.0 71 78 A Q < 0 0 200 -2,-1.1 -1,-0.2 -3,-0.7 -2,-0.1 0.512 360.0 360.0 -16.3 360.0 -8.6 54.7 21.1