==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION REPRESSOR 11-NOV-05 2F05 . COMPND 2 MOLECULE: PAIRED AMPHIPATHIC HELIX PROTEIN SIN3B; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR H.VAN INGEN,M.A.BALTUSSEN,J.AELEN,G.W.VUISTER . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6675.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 80.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 10.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 16.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 45 52.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A E 0 0 163 0, 0.0 3,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 72.1 16.2 -13.5 3.6 2 2 A S + 0 0 124 1,-0.3 2,-0.8 0, 0.0 0, 0.0 0.778 360.0 37.6 -91.1 -50.3 19.0 -11.8 5.4 3 3 A D S S- 0 0 120 4,-0.0 2,-1.2 5,-0.0 -1,-0.3 -0.882 81.2-164.2-100.5 102.6 19.3 -9.3 2.6 4 4 A S > + 0 0 23 -2,-0.8 4,-1.9 -3,-0.2 5,-0.1 -0.755 16.2 170.5 -94.1 92.5 15.8 -8.7 1.5 5 5 A V H > S+ 0 0 89 -2,-1.2 4,-1.5 2,-0.2 -1,-0.2 0.912 81.0 47.5 -70.1 -43.4 16.2 -7.0 -1.8 6 6 A E H > S+ 0 0 148 1,-0.2 4,-1.6 2,-0.2 3,-0.2 0.908 112.6 51.6 -64.6 -38.1 12.5 -7.2 -2.7 7 7 A F H > S+ 0 0 126 1,-0.2 4,-2.8 2,-0.2 -2,-0.2 0.868 102.8 58.9 -67.3 -36.9 11.8 -5.8 0.7 8 8 A N H X S+ 0 0 91 -4,-1.9 4,-3.0 2,-0.2 -1,-0.2 0.852 102.5 53.1 -62.8 -33.2 14.3 -3.0 0.0 9 9 A N H X S+ 0 0 90 -4,-1.5 4,-1.8 -3,-0.2 -1,-0.2 0.911 112.4 45.5 -64.7 -39.8 12.2 -2.0 -3.0 10 10 A A H X S+ 0 0 8 -4,-1.6 4,-2.8 2,-0.2 -2,-0.2 0.893 113.4 49.8 -66.4 -41.3 9.3 -1.9 -0.5 11 11 A I H X S+ 0 0 55 -4,-2.8 4,-3.8 2,-0.2 5,-0.3 0.899 108.2 51.6 -68.3 -41.1 11.4 -0.0 2.0 12 12 A S H X S+ 0 0 76 -4,-3.0 4,-1.8 2,-0.2 -1,-0.2 0.914 111.6 49.3 -61.0 -41.2 12.5 2.5 -0.5 13 13 A Y H X S+ 0 0 7 -4,-1.8 4,-2.1 -5,-0.2 -2,-0.2 0.961 117.1 40.3 -58.4 -53.2 8.8 3.0 -1.4 14 14 A V H X S+ 0 0 35 -4,-2.8 4,-2.9 2,-0.2 -2,-0.2 0.912 114.2 51.2 -66.0 -47.1 7.9 3.4 2.3 15 15 A N H X S+ 0 0 81 -4,-3.8 4,-1.8 1,-0.2 -1,-0.2 0.847 110.4 51.4 -59.5 -35.4 10.9 5.5 3.3 16 16 A K H X S+ 0 0 70 -4,-1.8 4,-3.3 -5,-0.3 5,-0.3 0.942 109.1 49.2 -67.9 -46.0 10.1 7.8 0.5 17 17 A I H X S+ 0 0 0 -4,-2.1 4,-2.1 1,-0.2 -2,-0.2 0.922 107.9 56.0 -54.9 -48.4 6.5 8.0 1.7 18 18 A K H < S+ 0 0 90 -4,-2.9 -1,-0.2 1,-0.2 -2,-0.2 0.884 116.2 36.1 -49.2 -48.6 7.9 8.8 5.2 19 19 A T H >< S+ 0 0 74 -4,-1.8 3,-1.7 1,-0.2 4,-0.3 0.878 114.8 53.5 -73.9 -46.5 9.8 11.7 3.8 20 20 A R H 3< S+ 0 0 140 -4,-3.3 -2,-0.2 1,-0.3 -3,-0.2 0.735 123.8 29.4 -67.7 -24.2 7.3 12.9 1.2 21 21 A F T >< S+ 0 0 23 -4,-2.1 3,-0.8 -5,-0.3 7,-0.3 -0.158 84.3 125.7-125.8 35.3 4.6 13.1 3.7 22 22 A L T < S+ 0 0 111 -3,-1.7 -2,-0.1 1,-0.3 -3,-0.1 0.843 78.6 45.1 -65.6 -34.2 7.0 13.9 6.5 23 23 A D T 3 S+ 0 0 142 -4,-0.3 -1,-0.3 1,-0.2 -2,-0.1 0.542 111.9 57.0 -85.5 -8.5 5.1 17.0 7.4 24 24 A H X> + 0 0 105 -3,-0.8 4,-0.9 -6,-0.2 3,-0.9 -0.707 58.9 171.3-128.6 78.4 1.8 15.1 7.1 25 25 A P H 3> S+ 0 0 64 0, 0.0 4,-1.8 0, 0.0 5,-0.2 0.792 74.8 65.4 -59.8 -29.3 1.8 12.1 9.5 26 26 A E H 3> S+ 0 0 138 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.886 96.2 55.0 -63.1 -37.5 -1.8 11.4 8.9 27 27 A I H <> S+ 0 0 39 -3,-0.9 4,-1.8 2,-0.2 -1,-0.2 0.896 106.7 51.1 -66.0 -38.8 -1.3 10.5 5.2 28 28 A Y H X S+ 0 0 56 -4,-0.9 4,-2.0 -7,-0.3 -1,-0.2 0.939 115.1 42.9 -59.5 -47.2 1.3 7.9 6.1 29 29 A R H X S+ 0 0 162 -4,-1.8 4,-2.0 1,-0.2 -2,-0.2 0.815 107.6 59.4 -72.3 -34.2 -1.2 6.4 8.6 30 30 A S H X S+ 0 0 37 -4,-2.7 4,-0.8 1,-0.2 -1,-0.2 0.842 109.3 45.9 -63.2 -34.0 -4.1 6.7 6.2 31 31 A F H >X S+ 0 0 9 -4,-1.8 4,-2.3 -5,-0.2 3,-0.6 0.917 107.7 55.3 -73.5 -44.8 -2.2 4.5 3.9 32 32 A L H 3X S+ 0 0 77 -4,-2.0 4,-2.4 1,-0.3 -2,-0.2 0.853 104.3 55.5 -56.2 -34.6 -1.2 2.0 6.6 33 33 A E H 3X S+ 0 0 121 -4,-2.0 4,-2.5 2,-0.2 -1,-0.3 0.832 106.6 51.1 -70.9 -30.2 -4.9 1.6 7.4 34 34 A I H X S+ 0 0 21 -4,-2.8 4,-1.9 1,-0.2 3,-0.6 0.861 102.6 53.1 -61.6 -37.8 -6.2 -5.0 2.7 39 39 A Q H 3X S+ 0 0 102 -4,-1.5 4,-2.1 1,-0.2 -1,-0.2 0.880 103.3 56.5 -68.6 -36.4 -4.6 -7.8 4.8 40 40 A K H 3< S+ 0 0 114 -4,-1.4 -1,-0.2 1,-0.2 -2,-0.2 0.666 108.5 49.4 -68.0 -15.6 -7.9 -8.5 6.5 41 41 A E H << S+ 0 0 17 -4,-0.7 -2,-0.2 -3,-0.6 -1,-0.2 0.870 108.6 50.9 -85.8 -43.0 -9.3 -9.0 3.0 42 42 A Q H < S+ 0 0 94 -4,-1.9 -2,-0.2 -5,-0.1 2,-0.2 0.803 101.2 72.5 -67.3 -34.0 -6.6 -11.4 1.9 43 43 A L S < S- 0 0 101 -4,-2.1 0, 0.0 2,-0.2 0, 0.0 -0.488 78.0-138.7 -79.9 154.4 -7.0 -13.6 4.9 44 44 A H S S+ 0 0 180 -2,-0.2 2,-0.9 1,-0.1 -1,-0.1 0.700 90.2 80.9 -85.7 -20.3 -10.0 -15.8 5.2 45 45 A T S S+ 0 0 128 4,-0.0 2,-0.2 2,-0.0 -2,-0.2 -0.786 70.8 119.3 -87.3 107.1 -10.2 -15.0 8.9 46 46 A K S S- 0 0 61 -2,-0.9 -5,-0.1 1,-0.1 -2,-0.1 -0.770 76.9 -72.2-154.1-171.0 -12.0 -11.7 8.7 47 47 A G S S- 0 0 87 1,-0.3 -1,-0.1 -2,-0.2 -6,-0.0 0.951 111.2 -2.2 -66.3 -50.6 -15.1 -9.8 9.8 48 48 A R S S- 0 0 173 2,-0.1 2,-1.0 -3,-0.0 -1,-0.3 -0.997 80.0-104.3-145.0 137.2 -17.5 -11.5 7.4 49 49 A P S S+ 0 0 104 0, 0.0 2,-0.3 0, 0.0 -5,-0.1 -0.547 80.5 108.8 -65.0 99.9 -17.0 -14.1 4.7 50 50 A F S S- 0 0 142 -2,-1.0 2,-1.0 -9,-0.1 -2,-0.1 -0.945 79.5-104.0-166.9 156.4 -17.2 -11.8 1.8 51 51 A R + 0 0 127 -2,-0.3 3,-0.2 1,-0.2 -10,-0.1 -0.859 51.5 167.9 -98.0 100.4 -14.9 -10.4 -0.8 52 52 A G + 0 0 35 -2,-1.0 2,-0.7 1,-0.2 -1,-0.2 0.996 51.5 29.4 -77.9 -73.7 -14.6 -6.9 0.6 53 53 A M - 0 0 16 -16,-0.2 -1,-0.2 -15,-0.1 2,-0.2 -0.839 68.0-155.7-106.2 108.6 -12.0 -4.8 -0.9 54 54 A S >> - 0 0 50 -2,-0.7 4,-2.1 -3,-0.2 3,-1.0 -0.599 29.8-111.5 -83.6 150.7 -11.0 -5.5 -4.4 55 55 A E H 3> S+ 0 0 53 1,-0.3 4,-3.4 2,-0.2 5,-0.2 0.811 115.8 54.2 -49.9 -40.6 -7.5 -4.4 -5.6 56 56 A E H 3> S+ 0 0 162 1,-0.2 4,-1.2 2,-0.2 -1,-0.3 0.861 112.4 42.5 -67.8 -32.6 -8.8 -1.7 -7.9 57 57 A E H <> S+ 0 0 93 -3,-1.0 4,-1.2 2,-0.2 -1,-0.2 0.753 113.0 54.8 -85.6 -22.8 -10.7 -0.1 -5.1 58 58 A V H >X S+ 0 0 0 -4,-2.1 4,-1.9 2,-0.2 3,-0.7 0.970 108.7 47.2 -64.9 -53.1 -7.7 -0.6 -2.9 59 59 A F H 3X S+ 0 0 78 -4,-3.4 4,-3.5 1,-0.3 5,-0.3 0.781 101.8 68.3 -59.5 -29.8 -5.6 1.2 -5.4 60 60 A T H 3X S+ 0 0 82 -4,-1.2 4,-1.9 1,-0.2 -1,-0.3 0.939 106.2 37.0 -56.4 -49.2 -8.2 3.9 -5.5 61 61 A E H < S+ 0 0 108 -4,-1.9 3,-0.7 -5,-0.3 -2,-0.2 0.747 107.3 56.8 -70.5 -29.3 -5.7 9.1 -3.7 65 65 A L H 3< S+ 0 0 17 -4,-1.5 -2,-0.2 1,-0.2 -1,-0.2 0.943 118.3 30.5 -68.2 -50.4 -3.3 8.8 -0.8 66 66 A F T >< S+ 0 0 0 -4,-2.1 3,-2.8 -5,-0.1 2,-0.7 -0.178 80.1 165.0-106.5 40.0 -0.3 9.7 -2.9 67 67 A R T < S+ 0 0 174 -3,-0.7 -3,-0.1 1,-0.3 3,-0.1 -0.426 75.4 25.8 -62.7 103.4 -2.1 12.0 -5.5 68 68 A G T 3 S+ 0 0 63 -2,-0.7 2,-1.0 -5,-0.1 -1,-0.3 0.044 99.4 92.4 128.6 -23.8 0.9 13.7 -7.1 69 69 A Q <> + 0 0 47 -3,-2.8 4,-1.7 -6,-0.2 5,-0.1 -0.738 43.1 167.0-101.8 81.2 3.4 11.1 -6.4 70 70 A E H > S+ 0 0 150 -2,-1.0 4,-1.0 2,-0.2 5,-0.2 0.846 72.3 62.8 -64.8 -34.2 3.2 9.0 -9.6 71 71 A D H >> S+ 0 0 68 1,-0.2 4,-2.5 2,-0.2 3,-1.3 0.961 105.7 44.3 -54.2 -53.9 6.5 7.2 -8.7 72 72 A L H 3> S+ 0 0 1 1,-0.3 4,-1.6 2,-0.2 -1,-0.2 0.879 111.8 53.9 -60.5 -36.8 4.9 5.7 -5.6 73 73 A L H 3< S+ 0 0 17 -4,-1.7 -1,-0.3 -7,-0.2 -2,-0.2 0.646 113.4 43.6 -74.5 -15.2 1.8 4.9 -7.5 74 74 A S H X< S+ 0 0 64 -3,-1.3 3,-0.7 -4,-1.0 -2,-0.2 0.766 110.5 51.4 -98.7 -33.6 3.8 3.0 -10.0 75 75 A E H >X S+ 0 0 71 -4,-2.5 3,-1.5 1,-0.2 4,-1.4 0.745 96.9 72.1 -75.9 -20.9 6.2 1.2 -7.6 76 76 A F H 3X S+ 0 0 2 -4,-1.6 4,-2.3 -5,-0.3 -1,-0.2 0.836 86.7 64.5 -60.6 -29.8 3.0 0.0 -5.8 77 77 A G H <4 S+ 0 0 8 -3,-0.7 -1,-0.3 1,-0.2 -2,-0.2 0.691 104.8 45.0 -68.5 -18.4 2.5 -2.2 -8.8 78 78 A Q H <4 S+ 0 0 110 -3,-1.5 4,-0.3 -4,-0.2 -1,-0.2 0.727 110.5 52.4 -92.0 -29.7 5.6 -4.0 -7.8 79 79 A F H < S+ 0 0 97 -4,-1.4 -2,-0.2 2,-0.1 -3,-0.2 0.824 106.1 68.5 -73.5 -32.5 4.7 -4.2 -4.2 80 80 A L S < S- 0 0 21 -4,-2.3 2,-1.0 -5,-0.2 3,-0.1 -0.228 119.8 -58.4 -75.6 167.5 1.4 -5.7 -5.3 81 81 A P > - 0 0 57 0, 0.0 3,-1.6 0, 0.0 4,-0.3 -0.384 52.4-171.3 -53.2 94.6 1.1 -9.2 -6.8 82 82 A E G > S+ 0 0 117 -2,-1.0 3,-2.2 -4,-0.3 -3,-0.1 0.791 75.9 77.5 -63.0 -27.6 3.4 -8.7 -9.8 83 83 A A G 3 S+ 0 0 97 1,-0.3 -1,-0.3 -3,-0.1 -3,-0.0 0.769 88.7 58.1 -54.5 -28.8 2.2 -12.2 -11.1 84 84 A K G < 0 0 135 -3,-1.6 -1,-0.3 0, 0.0 -2,-0.2 0.703 360.0 360.0 -72.8 -22.2 -0.9 -10.4 -12.3 85 85 A R < 0 0 212 -3,-2.2 -7,-0.0 -4,-0.3 -3,-0.0 -0.317 360.0 360.0-106.7 360.0 1.1 -8.0 -14.4