==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 12-NOV-05 2F09 . COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YDHA; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; . AUTHOR G.S.SHAW,M.J.REVINGTON,ONTARIO CENTRE FOR STRUCTURAL . 82 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5729.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 63.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 30 36.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 5 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 16 19.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 245 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 109.8 9.5 -22.1 -14.4 2 2 A Q - 0 0 143 3,-0.0 2,-0.3 0, 0.0 19,-0.1 -0.994 360.0-142.1-135.7 132.2 6.4 -20.0 -15.0 3 3 A T - 0 0 76 -2,-0.4 2,-0.2 17,-0.1 17,-0.2 -0.634 29.5-117.6 -84.7 143.2 4.4 -19.4 -18.0 4 4 A D B -A 19 0A 0 15,-2.7 15,-3.0 -2,-0.3 2,-0.3 -0.567 36.4-170.8 -79.3 145.9 3.0 -15.9 -18.3 5 5 A T - 0 0 34 13,-0.2 13,-0.2 -2,-0.2 74,-0.1 -0.992 14.7-128.6-141.1 149.0 -0.7 -15.7 -18.3 6 6 A L - 0 0 7 11,-0.4 -1,-0.1 -2,-0.3 10,-0.0 0.206 56.3 -61.7 -78.3-154.8 -3.3 -13.1 -18.9 7 7 A E - 0 0 33 1,-0.1 9,-0.2 9,-0.0 -1,-0.0 0.764 56.8-165.9 -67.4 -26.1 -6.3 -11.9 -16.8 8 8 A Y + 0 0 122 7,-1.9 8,-0.2 1,-0.1 2,-0.2 0.347 68.0 67.6 50.8 7.8 -7.8 -15.4 -17.1 9 9 A Q + 0 0 143 5,-0.2 2,-0.2 6,-0.2 -1,-0.1 -0.706 58.9 158.6-156.5 82.6 -11.1 -14.1 -15.9 10 10 A a - 0 0 19 3,-2.1 65,-0.1 -2,-0.2 67,-0.0 -0.521 54.4 -99.9 -99.4 173.0 -12.9 -11.7 -18.1 11 11 A D S S+ 0 0 147 63,-0.3 64,-0.1 -2,-0.2 -1,-0.1 0.931 117.9 22.4 -60.7 -45.8 -16.6 -11.0 -18.0 12 12 A E S S+ 0 0 106 62,-0.3 -1,-0.2 1,-0.2 63,-0.1 0.847 131.1 9.6 -92.3 -37.6 -17.5 -13.3 -20.8 13 13 A K S S- 0 0 83 2,-0.0 -3,-2.1 0, 0.0 2,-0.6 -0.897 74.2-103.2-144.1 158.7 -14.7 -15.7 -21.1 14 14 A P - 0 0 63 0, 0.0 2,-1.3 0, 0.0 -5,-0.2 -0.831 27.9-155.3 -88.5 125.9 -11.6 -16.9 -19.2 15 15 A L + 0 0 0 -2,-0.6 -7,-1.9 13,-0.1 2,-1.3 -0.580 27.3 162.0-101.9 69.2 -8.5 -15.5 -20.9 16 16 A T + 0 0 36 -2,-1.3 13,-0.5 -8,-0.2 2,-0.4 -0.758 12.7 175.1 -95.5 93.4 -6.1 -18.0 -19.8 17 17 A V E - B 0 28A 0 -2,-1.3 2,-1.2 11,-0.2 -11,-0.4 -0.811 30.5-139.9-100.9 138.3 -3.2 -17.5 -22.1 18 18 A K E - B 0 27A 61 9,-2.2 9,-1.2 -2,-0.4 2,-0.8 -0.807 22.3-165.1 -97.8 87.1 -0.0 -19.3 -21.9 19 19 A L E -AB 4 26A 11 -15,-3.0 -15,-2.7 -2,-1.2 2,-0.2 -0.701 16.3-137.1 -71.8 114.3 2.3 -16.6 -22.7 20 20 A N > - 0 0 47 5,-2.7 3,-2.3 -2,-0.8 5,-0.2 -0.579 23.0-115.6 -71.5 137.5 5.4 -18.3 -23.4 21 21 A N T 3 S+ 0 0 106 1,-0.3 -1,-0.1 -2,-0.2 -18,-0.0 0.869 117.9 48.5 -50.2 -49.5 8.2 -16.2 -21.7 22 22 A P T 3 S- 0 0 90 0, 0.0 -1,-0.3 0, 0.0 -2,-0.0 0.614 109.6-131.5 -60.1 -12.5 10.0 -15.2 -25.0 23 23 A R S < S+ 0 0 64 -3,-2.3 -2,-0.1 2,-0.2 16,-0.1 0.735 73.1 125.2 62.2 30.6 6.3 -14.3 -26.1 24 24 A Q S S+ 0 0 111 1,-0.1 15,-1.6 14,-0.1 2,-0.3 0.646 73.4 23.7 -84.4 -16.4 6.8 -16.2 -29.3 25 25 A E E - C 0 38A 63 13,-0.3 -5,-2.7 -5,-0.2 2,-0.4 -0.982 57.1-158.0-155.7 150.5 3.8 -18.3 -28.5 26 26 A V E -BC 19 37A 0 11,-3.1 11,-2.9 -2,-0.3 2,-0.8 -0.998 11.0-151.7-131.6 132.2 0.5 -18.4 -26.7 27 27 A S E -BC 18 36A 27 -9,-1.2 -9,-2.2 -2,-0.4 2,-0.3 -0.954 33.2-169.1-102.6 113.6 -1.4 -21.5 -25.7 28 28 A F E -BC 17 35A 1 7,-1.9 7,-3.2 -2,-0.8 2,-0.6 -0.809 23.4-114.0-118.8 149.9 -4.8 -20.3 -25.6 29 29 A V E - C 0 34A 14 -13,-0.5 5,-0.2 -2,-0.3 -13,-0.1 -0.687 17.2-174.2 -89.1 114.8 -8.1 -21.6 -24.5 30 30 A Y S S- 0 0 100 3,-2.7 -1,-0.2 -2,-0.6 4,-0.1 0.828 82.7 -57.2 -70.1 -38.1 -10.7 -22.3 -27.1 31 31 A D S S- 0 0 118 2,-0.7 -2,-0.1 -3,-0.1 3,-0.1 -0.060 120.7 -15.9-173.9 -58.2 -13.2 -23.0 -24.3 32 32 A N S S+ 0 0 137 1,-0.0 2,-0.3 2,-0.0 -3,-0.1 0.179 123.7 73.8-145.7 15.2 -11.6 -25.8 -22.3 33 33 A Q S S- 0 0 100 -5,-0.0 -3,-2.7 0, 0.0 -2,-0.7 -0.907 75.3-124.1-131.8 154.9 -9.0 -27.0 -24.7 34 34 A L E -C 29 0A 91 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.859 22.6-178.8-112.8 134.0 -5.8 -25.4 -25.6 35 35 A L E -C 28 0A 35 -7,-3.2 -7,-1.9 -2,-0.5 2,-0.5 -0.701 25.9-121.9-112.5 174.2 -4.5 -24.4 -29.0 36 36 A H E +C 27 0A 116 -9,-0.3 2,-0.3 -2,-0.3 -9,-0.2 -0.959 27.9 177.2-128.8 117.5 -1.2 -22.8 -29.8 37 37 A L E -C 26 0A 3 -11,-2.9 -11,-3.1 -2,-0.5 2,-0.4 -0.846 12.4-154.3-113.9 150.6 -1.0 -19.5 -31.6 38 38 A K E -CD 25 49A 140 11,-1.7 11,-2.9 -2,-0.3 2,-0.5 -0.928 20.7-105.5-133.8 156.8 2.1 -17.7 -32.3 39 39 A Q E + D 0 48A 87 -15,-1.6 9,-0.2 -2,-0.4 2,-0.1 -0.615 46.6 157.3 -82.2 122.5 3.3 -14.2 -33.0 40 40 A G - 0 0 36 7,-1.5 2,-0.9 -2,-0.5 7,-0.2 0.078 58.6 -15.0-112.5-129.6 4.1 -13.5 -36.5 41 41 A I S S- 0 0 154 -2,-0.1 2,-0.3 5,-0.1 -1,-0.1 -0.707 71.3-163.5 -85.2 107.0 4.2 -10.3 -38.4 42 42 A S + 0 0 37 -2,-0.9 4,-0.1 1,-0.2 14,-0.0 -0.706 32.3 143.9 -95.8 143.2 2.5 -7.8 -36.1 43 43 A A S S+ 0 0 97 -2,-0.3 -1,-0.2 0, 0.0 3,-0.0 0.436 77.7 43.2-139.6 -44.1 1.2 -4.5 -37.3 44 44 A S S S- 0 0 79 0, 0.0 2,-0.2 0, 0.0 -2,-0.1 0.551 135.0 -56.4 -85.7 -8.2 -2.0 -3.8 -35.4 45 45 A G S S- 0 0 31 14,-0.0 2,-0.4 2,-0.0 13,-0.2 -0.722 93.5 -34.4 172.5-117.0 -0.5 -5.0 -32.1 46 46 A A E - E 0 57A 21 11,-2.4 11,-3.0 -2,-0.2 2,-0.7 -0.986 61.6-154.9-138.0 115.8 1.0 -8.3 -31.4 47 47 A R E - E 0 56A 106 -2,-0.4 -7,-1.5 9,-0.2 2,-0.7 -0.885 16.5-177.2-110.6 122.3 -0.6 -11.0 -33.2 48 48 A Y E +DE 39 55A 16 7,-2.5 7,-2.4 -2,-0.7 2,-0.4 -0.961 24.1 164.8-109.2 110.0 -0.7 -14.5 -32.1 49 49 A T E +DE 38 54A 27 -11,-2.9 -11,-1.7 -2,-0.7 5,-0.2 -0.979 27.8 165.0-135.2 144.0 -2.4 -16.5 -34.6 50 50 A D - 0 0 77 3,-1.7 4,-0.1 -2,-0.4 -1,-0.1 0.622 60.7-101.9-116.0 -47.5 -2.8 -20.1 -35.5 51 51 A G S S+ 0 0 43 2,-1.3 3,-0.1 0, 0.0 -14,-0.1 -0.146 110.6 79.0 145.5 -37.3 -5.7 -20.3 -37.8 52 52 A I S S- 0 0 58 1,-0.3 2,-0.3 14,-0.1 14,-0.0 0.964 118.2 -10.2 -59.9 -53.1 -8.3 -21.5 -35.4 53 53 A Y - 0 0 11 13,-0.1 -3,-1.7 12,-0.1 -2,-1.3 -0.909 68.5-123.3-139.3 166.9 -8.5 -18.0 -34.2 54 54 A V E -E 49 0A 43 -2,-0.3 11,-2.4 -5,-0.2 2,-0.5 -0.970 27.3-157.1-112.9 110.4 -6.6 -14.9 -34.7 55 55 A F E -EF 48 64A 2 -7,-2.4 -7,-2.5 -2,-0.6 2,-0.6 -0.829 6.8-167.2 -98.1 128.1 -5.4 -13.5 -31.3 56 56 A W E -EF 47 63A 104 7,-3.0 7,-2.7 -2,-0.5 2,-0.6 -0.959 4.5-171.1-121.3 119.1 -4.7 -9.9 -31.2 57 57 A S E -EF 46 62A 15 -11,-3.0 -11,-2.4 -2,-0.6 5,-0.2 -0.933 11.9-175.0-108.4 121.5 -2.9 -8.5 -28.4 58 58 A K - 0 0 120 3,-3.4 4,-0.1 -2,-0.6 -1,-0.1 0.629 60.4 -98.9 -87.9 -13.6 -2.7 -4.7 -28.3 59 59 A G S S+ 0 0 42 2,-0.9 3,-0.1 -13,-0.1 -14,-0.0 -0.359 115.8 22.7 125.7 -49.7 -0.5 -5.1 -25.2 60 60 A D S S+ 0 0 110 1,-0.1 17,-1.7 19,-0.1 2,-0.4 0.445 119.1 66.8-120.0 -12.0 -3.1 -4.4 -22.6 61 61 A E B -H 76 0B 94 15,-0.2 -3,-3.4 13,-0.0 -2,-0.9 -0.930 63.7-167.4-114.7 136.6 -6.1 -5.4 -24.6 62 62 A A E +F 57 0A 1 13,-2.9 13,-0.5 -2,-0.4 2,-0.3 -0.991 15.2 158.9-128.9 124.0 -6.6 -8.8 -25.7 63 63 A T E -F 56 0A 31 -7,-2.7 -7,-3.0 -2,-0.5 2,-0.3 -0.918 19.6-159.0-136.2 162.0 -9.1 -9.9 -28.3 64 64 A V E +FG 55 72A 0 8,-3.0 7,-2.3 -2,-0.3 8,-1.4 -0.860 16.7 169.8-154.8 112.9 -9.3 -12.9 -30.5 65 65 A Y E - G 0 70A 118 -11,-2.4 2,-0.4 -2,-0.3 5,-0.3 -0.981 21.3-169.2-137.2 116.6 -11.3 -13.1 -33.6 66 66 A K - 0 0 73 3,-2.4 2,-2.4 -2,-0.4 3,-0.4 -0.815 49.7-105.1 -88.4 151.1 -11.6 -15.5 -36.4 67 67 A R S S+ 0 0 195 -2,-0.4 3,-0.0 1,-0.3 -2,-0.0 -0.590 119.0 27.7 -85.4 73.9 -13.5 -13.9 -39.1 68 68 A D S S+ 0 0 128 -2,-2.4 2,-0.4 0, 0.0 -1,-0.3 -0.232 127.8 39.9 167.4 -32.0 -16.6 -15.9 -38.4 69 69 A R - 0 0 143 -3,-0.4 -3,-2.4 0, 0.0 2,-0.4 -0.905 55.8-176.2-149.0 106.1 -16.1 -16.5 -34.7 70 70 A I E -G 65 0A 73 -2,-0.4 -5,-0.3 -5,-0.3 3,-0.1 -0.837 0.3-177.1 -91.4 136.7 -14.7 -14.2 -32.1 71 71 A V E S+ 0 0 19 -7,-2.3 2,-0.3 -2,-0.4 -6,-0.1 0.682 72.9 16.4-108.6 -25.7 -14.3 -15.8 -28.8 72 72 A L E +G 64 0A 5 -8,-1.4 -8,-3.0 1,-0.1 -1,-0.4 -0.989 52.4 160.1-149.0 136.0 -13.2 -12.8 -26.8 73 73 A N S S+ 0 0 100 -2,-0.3 2,-0.2 -10,-0.2 -10,-0.1 0.265 70.9 48.6-139.1 9.4 -13.3 -9.1 -27.8 74 74 A N + 0 0 72 -12,-0.1 2,-0.4 -10,-0.1 -62,-0.3 -0.698 59.3 127.2-162.0 87.6 -13.0 -7.4 -24.5 75 75 A a - 0 0 4 -13,-0.5 -13,-2.9 -2,-0.2 2,-0.6 -0.944 30.0-168.7-141.2 128.4 -10.3 -8.3 -22.1 76 76 A Q B -H 61 0B 102 -2,-0.4 -15,-0.2 -15,-0.2 -16,-0.0 -0.887 30.2-123.3-129.7 101.4 -8.1 -5.6 -20.8 77 77 A L - 0 0 16 -17,-1.7 -71,-0.0 -2,-0.6 -2,-0.0 0.036 14.3-155.9 -56.8 133.6 -5.4 -7.2 -19.1 78 78 A Q S S- 0 0 154 1,-0.3 -1,-0.1 0, 0.0 -72,-0.1 0.969 72.1 -68.9 -66.4 -54.0 -4.6 -6.5 -15.5 79 79 A N - 0 0 93 -74,-0.1 -1,-0.3 -19,-0.0 -19,-0.1 -0.721 47.2-123.0 171.4 146.2 -1.0 -7.5 -16.2 80 80 A P - 0 0 26 0, 0.0 -74,-0.1 0, 0.0 -76,-0.1 0.138 59.6 -65.0 -78.8-149.9 0.4 -10.9 -17.0 81 81 A Q 0 0 63 -62,-0.1 -77,-0.1 -76,-0.0 -75,-0.1 0.905 360.0 360.0 -63.4 -37.1 3.2 -12.5 -14.9 82 82 A R 0 0 211 -77,-0.1 -78,-0.0 0, 0.0 0, 0.0 0.467 360.0 360.0-141.2 360.0 5.3 -9.7 -16.1