==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=18-MAR-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 29-OCT-08 3F2E . COMPND 2 MOLECULE: SIRV COAT PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ISLANDICUS RUDIVIRUS 1 VARI . AUTHOR R.E.TAUROG,B.R.SZYMCZYNA,J.R.WILLIAMSON,J.E.JOHNSON . 83 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4783.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 65 78.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 54 65.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 52 A F > 0 0 79 0, 0.0 4,-1.9 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -66.4 31.3 20.2 34.8 2 53 A T H > + 0 0 127 2,-0.2 4,-1.8 1,-0.2 5,-0.1 0.870 360.0 52.2 -68.5 -35.9 30.6 17.2 36.9 3 54 A A H > S+ 0 0 49 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.907 106.8 52.0 -65.0 -42.7 27.8 19.3 38.4 4 55 A V H > S+ 0 0 18 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.921 108.2 51.5 -60.6 -43.3 26.4 20.0 35.0 5 56 A A H X S+ 0 0 33 -4,-1.9 4,-2.3 1,-0.2 -1,-0.2 0.888 110.6 48.4 -61.0 -39.2 26.4 16.3 34.1 6 57 A E H X S+ 0 0 140 -4,-1.8 4,-1.8 2,-0.2 -1,-0.2 0.883 111.2 51.0 -66.8 -38.0 24.5 15.5 37.3 7 58 A Q H X S+ 0 0 68 -4,-2.3 4,-1.4 2,-0.2 -2,-0.2 0.937 111.9 45.7 -66.0 -47.2 22.0 18.3 36.6 8 59 A V H X S+ 0 0 0 -4,-2.8 4,-2.5 1,-0.2 3,-0.2 0.924 109.9 55.9 -59.9 -43.6 21.4 17.0 33.0 9 60 A S H X S+ 0 0 23 -4,-2.3 4,-2.2 -5,-0.2 -1,-0.2 0.860 101.0 57.6 -59.1 -36.4 21.1 13.4 34.4 10 61 A A H X S+ 0 0 42 -4,-1.8 4,-1.6 1,-0.2 -1,-0.2 0.921 110.1 44.3 -59.9 -43.4 18.3 14.5 36.8 11 62 A V H X S+ 0 0 2 -4,-1.4 4,-1.6 -3,-0.2 -2,-0.2 0.914 110.2 54.1 -66.8 -43.2 16.3 15.7 33.8 12 63 A L H X>S+ 0 0 0 -4,-2.5 5,-2.4 1,-0.2 4,-0.7 0.874 106.6 54.0 -60.2 -34.7 17.0 12.6 31.7 13 64 A S H ><5S+ 0 0 89 -4,-2.2 3,-0.8 1,-0.2 -1,-0.2 0.922 104.7 53.0 -63.5 -46.1 15.7 10.5 34.6 14 65 A Q H 3<5S+ 0 0 139 -4,-1.6 -1,-0.2 1,-0.2 -2,-0.2 0.857 116.2 40.1 -56.2 -36.8 12.4 12.4 34.7 15 66 A Y H 3<5S- 0 0 104 -4,-1.6 -1,-0.2 2,-0.1 -2,-0.2 0.449 108.9-120.2 -97.9 -0.6 12.0 11.7 31.0 16 67 A G T <<5 + 0 0 60 -3,-0.8 2,-0.6 -4,-0.7 -3,-0.2 0.794 53.4 162.0 70.3 29.2 13.3 8.1 31.0 17 68 A I < + 0 0 28 -5,-2.4 2,-0.2 -6,-0.2 -1,-0.2 -0.736 3.8 147.7 -91.3 117.9 16.1 8.9 28.5 18 69 A T > + 0 0 110 -2,-0.6 3,-0.6 -5,-0.0 4,-0.0 -0.810 34.6 40.6-133.4 178.7 18.9 6.3 28.3 19 70 A G G > S- 0 0 43 -2,-0.2 3,-1.8 1,-0.2 4,-0.3 -0.336 113.2 -23.8 79.0-163.0 21.3 5.0 25.7 20 71 A P G > S+ 0 0 117 0, 0.0 3,-1.4 0, 0.0 4,-0.4 0.753 126.0 70.5 -57.0 -30.2 23.1 7.0 23.0 21 72 A N G X> S+ 0 0 100 -3,-0.6 4,-1.0 1,-0.3 3,-0.8 0.715 81.6 73.7 -64.8 -20.4 20.5 9.8 23.1 22 73 A R H <> S+ 0 0 73 -3,-1.8 4,-2.2 1,-0.2 3,-0.3 0.869 87.3 63.7 -58.1 -35.4 21.7 10.9 26.5 23 74 A A H <> S+ 0 0 69 -3,-1.4 4,-2.3 -4,-0.3 -1,-0.2 0.808 93.9 60.3 -61.6 -33.4 24.8 12.3 24.8 24 75 A I H <> S+ 0 0 31 -3,-0.8 4,-2.2 -4,-0.4 -1,-0.2 0.936 111.0 39.6 -56.6 -48.3 22.7 14.8 22.8 25 76 A Y H X S+ 0 0 14 -4,-1.0 4,-2.7 -3,-0.3 -2,-0.2 0.844 112.7 53.7 -78.3 -33.7 21.4 16.4 26.0 26 77 A Q H X S+ 0 0 48 -4,-2.2 4,-2.2 2,-0.2 -1,-0.2 0.907 112.0 47.4 -63.6 -40.9 24.7 16.3 27.9 27 78 A G H X S+ 0 0 26 -4,-2.3 4,-2.0 2,-0.2 -2,-0.2 0.933 112.8 47.2 -65.4 -48.3 26.3 18.1 25.0 28 79 A F H X S+ 0 0 0 -4,-2.2 4,-2.3 1,-0.2 -2,-0.2 0.934 112.2 51.7 -55.5 -48.7 23.6 20.7 24.8 29 80 A G H X S+ 0 0 0 -4,-2.7 4,-2.6 1,-0.2 -2,-0.2 0.897 107.6 50.8 -59.1 -43.6 23.8 21.2 28.6 30 81 A L H X S+ 0 0 73 -4,-2.2 4,-2.5 1,-0.2 -1,-0.2 0.903 110.5 49.9 -61.5 -41.3 27.6 21.7 28.6 31 82 A K H X S+ 0 0 85 -4,-2.0 4,-2.1 2,-0.2 -2,-0.2 0.897 111.0 49.0 -65.4 -39.8 27.2 24.4 25.9 32 83 A V H X S+ 0 0 0 -4,-2.3 4,-2.6 2,-0.2 -2,-0.2 0.940 111.9 49.2 -63.6 -45.1 24.5 26.2 27.8 33 84 A A H X S+ 0 0 18 -4,-2.6 4,-2.5 1,-0.2 -2,-0.2 0.917 111.3 48.8 -61.1 -44.7 26.6 26.1 31.0 34 85 A R H X S+ 0 0 137 -4,-2.5 4,-2.2 2,-0.2 -1,-0.2 0.892 111.5 50.1 -62.0 -41.5 29.7 27.5 29.2 35 86 A A H X>S+ 0 0 13 -4,-2.1 4,-3.1 2,-0.2 5,-0.5 0.916 110.7 49.1 -62.5 -45.2 27.6 30.2 27.6 36 87 A L H X5S+ 0 0 46 -4,-2.6 4,-2.0 1,-0.2 -2,-0.2 0.925 112.1 49.1 -59.9 -44.7 26.2 31.2 31.0 37 88 A N H <5S+ 0 0 135 -4,-2.5 -2,-0.2 -5,-0.2 -1,-0.2 0.897 119.6 36.6 -62.3 -42.1 29.6 31.3 32.5 38 89 A R H <5S+ 0 0 208 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.914 128.9 28.7 -78.7 -44.7 31.1 33.4 29.8 39 90 A L H <5S- 0 0 89 -4,-3.1 -3,-0.2 -5,-0.2 -2,-0.2 0.738 86.9-154.1 -92.9 -27.3 28.3 35.8 28.9 40 91 A G << - 0 0 29 -4,-2.0 5,-0.3 -5,-0.5 -1,-0.1 -0.082 50.0 -29.3 67.4 178.8 26.3 36.1 32.2 41 92 A G S S+ 0 0 34 4,-0.1 3,-0.1 3,-0.1 40,-0.1 -0.329 93.2 78.9 -67.7 144.7 22.6 37.0 32.0 42 93 A G S > S- 0 0 25 38,-0.4 4,-2.0 1,-0.1 3,-0.4 -0.838 90.9 -55.8 147.1 177.9 21.2 39.0 29.2 43 94 A P H > S+ 0 0 107 0, 0.0 4,-2.6 0, 0.0 5,-0.2 0.801 124.9 60.1 -58.9 -31.1 20.0 39.1 25.6 44 95 A A H > S+ 0 0 57 2,-0.2 4,-2.3 1,-0.2 5,-0.1 0.942 107.2 45.2 -62.4 -45.2 23.3 37.7 24.3 45 96 A L H > S+ 0 0 0 -3,-0.4 4,-2.8 -5,-0.3 5,-0.2 0.914 112.2 52.0 -62.5 -43.1 22.9 34.5 26.4 46 97 A V H X S+ 0 0 42 -4,-2.0 4,-2.8 2,-0.2 5,-0.2 0.893 108.2 51.9 -61.5 -40.6 19.3 34.2 25.3 47 98 A N H X S+ 0 0 117 -4,-2.6 4,-2.5 2,-0.2 -2,-0.2 0.953 111.5 47.1 -55.0 -51.7 20.4 34.5 21.6 48 99 A M H X S+ 0 0 81 -4,-2.3 4,-2.5 2,-0.2 -2,-0.2 0.922 114.4 45.7 -59.4 -47.2 23.0 31.7 22.3 49 100 A I H X S+ 0 0 0 -4,-2.8 4,-2.6 2,-0.2 -1,-0.2 0.936 112.6 49.7 -64.8 -46.0 20.4 29.4 24.0 50 101 A N H X S+ 0 0 80 -4,-2.8 4,-2.2 1,-0.2 -1,-0.2 0.899 112.7 48.8 -57.7 -42.0 17.7 30.0 21.4 51 102 A G H X S+ 0 0 41 -4,-2.5 4,-2.6 -5,-0.2 -2,-0.2 0.926 111.1 48.6 -63.8 -46.1 20.2 29.2 18.6 52 103 A L H X S+ 0 0 18 -4,-2.5 4,-2.9 2,-0.2 5,-0.3 0.897 110.2 52.5 -62.1 -42.3 21.4 26.0 20.3 53 104 A K H X S+ 0 0 19 -4,-2.6 4,-2.4 2,-0.2 5,-0.2 0.965 111.8 44.9 -57.7 -53.4 17.8 24.9 20.8 54 105 A A H X S+ 0 0 62 -4,-2.2 4,-2.3 1,-0.2 -2,-0.2 0.910 115.1 48.6 -58.2 -44.3 17.0 25.3 17.2 55 106 A Y H X S+ 0 0 145 -4,-2.6 4,-3.2 2,-0.2 5,-0.3 0.915 111.9 47.3 -63.1 -44.9 20.2 23.7 16.1 56 107 A Y H X S+ 0 0 20 -4,-2.9 4,-1.8 2,-0.2 6,-1.7 0.875 112.2 50.6 -68.7 -35.7 19.8 20.6 18.3 57 108 A I H X S+ 0 0 63 -4,-2.4 4,-1.1 -5,-0.3 -1,-0.2 0.943 117.8 39.7 -62.9 -46.7 16.2 20.1 17.3 58 109 A S H < S+ 0 0 106 -4,-2.3 -2,-0.2 -5,-0.2 -3,-0.2 0.930 122.8 37.2 -69.3 -48.4 17.2 20.3 13.6 59 110 A A H < S+ 0 0 47 -4,-3.2 -3,-0.2 -5,-0.2 -2,-0.2 0.805 134.5 17.5 -79.1 -32.0 20.4 18.3 13.7 60 111 A F H < S- 0 0 95 -4,-1.8 -1,-0.2 -5,-0.3 -3,-0.2 0.285 96.5-115.1-127.0 8.0 19.6 15.6 16.2 61 112 A N < - 0 0 144 -4,-1.1 -4,-0.2 -5,-0.2 -3,-0.1 0.878 49.0-173.5 52.9 39.1 15.8 15.6 16.5 62 113 A A - 0 0 1 -6,-1.7 -1,-0.1 -9,-0.1 3,-0.1 -0.321 30.1-108.5 -61.2 145.9 16.2 16.8 20.1 63 114 A N > - 0 0 69 1,-0.2 4,-2.3 -3,-0.1 3,-0.2 -0.687 22.4-149.5 -79.0 118.0 13.0 16.9 22.2 64 115 A P H > S+ 0 0 66 0, 0.0 4,-2.2 0, 0.0 5,-0.2 0.846 95.7 54.6 -60.0 -36.1 12.1 20.6 22.7 65 116 A T H > S+ 0 0 79 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.911 109.9 47.1 -64.0 -41.3 10.5 20.0 26.0 66 117 A V H > S+ 0 0 0 -3,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.890 109.3 53.6 -67.4 -40.3 13.6 18.2 27.3 67 118 A L H X S+ 0 0 0 -4,-2.3 4,-2.5 2,-0.2 -2,-0.2 0.907 109.1 49.5 -61.1 -41.2 15.8 21.0 26.1 68 119 A D H X S+ 0 0 59 -4,-2.2 4,-2.5 2,-0.2 -2,-0.2 0.920 110.8 50.1 -60.0 -45.0 13.7 23.5 28.0 69 120 A A H X S+ 0 0 19 -4,-2.0 4,-2.0 2,-0.2 -2,-0.2 0.888 111.4 47.8 -62.5 -40.7 14.0 21.4 31.1 70 121 A V H X S+ 0 0 0 -4,-2.5 4,-1.7 2,-0.2 5,-0.2 0.912 111.2 50.8 -65.0 -43.6 17.8 21.2 30.8 71 122 A T H X S+ 0 0 0 -4,-2.5 4,-2.8 1,-0.2 6,-0.5 0.920 110.5 51.6 -58.7 -41.9 18.0 24.9 30.2 72 123 A D H X S+ 0 0 71 -4,-2.5 4,-2.0 1,-0.2 -2,-0.2 0.899 108.5 47.6 -63.2 -44.5 15.9 25.4 33.4 73 124 A I H < S+ 0 0 62 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.824 118.8 41.7 -72.5 -26.9 18.0 23.2 35.7 74 125 A I H < S+ 0 0 22 -4,-1.7 -2,-0.2 -5,-0.2 -1,-0.2 0.901 131.5 18.9 -83.8 -42.4 21.2 24.9 34.5 75 126 A T H < S- 0 0 21 -4,-2.8 -3,-0.2 2,-0.3 -2,-0.2 0.644 100.8-111.1-105.5 -20.8 20.2 28.6 34.4 76 127 A G S < S+ 0 0 60 -4,-2.0 -4,-0.2 -5,-0.5 -3,-0.1 0.295 93.3 69.9 101.0 -7.5 17.0 28.8 36.5 77 128 A S S > S- 0 0 14 -6,-0.5 3,-1.1 1,-0.1 -2,-0.3 -0.999 74.9-134.5-144.1 141.9 14.7 29.5 33.6 78 129 A P T 3 S+ 0 0 56 0, 0.0 -7,-0.2 0, 0.0 -6,-0.2 0.723 111.5 41.1 -65.9 -22.5 13.4 27.3 30.7 79 130 A T T 3 S- 0 0 82 -8,-0.1 -29,-0.1 2,-0.1 -30,-0.1 0.275 120.3-105.1-111.9 7.5 14.1 30.1 28.2 80 131 A G < + 0 0 0 -3,-1.1 2,-0.4 1,-0.2 -38,-0.4 0.568 58.5 160.2 85.3 13.0 17.4 31.2 29.7 81 132 A Y + 0 0 160 -40,-0.1 2,-0.4 -36,-0.1 -1,-0.2 -0.545 9.9 171.9 -67.2 124.7 16.5 34.5 31.5 82 133 A V 0 0 39 -2,-0.4 -37,-0.1 1,-0.2 -36,-0.1 -0.996 360.0 360.0-135.4 127.5 19.1 35.3 34.1 83 134 A S 0 0 135 -2,-0.4 -1,-0.2 -42,-0.1 -42,-0.0 0.988 360.0 360.0 -72.1 360.0 19.2 38.6 36.0