==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-DEC-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION 07-MAY-12 4F25 . COMPND 2 MOLECULE: POLYADENYLATE-BINDING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR G.KOZLOV,N.SAFAEE,K.GEHRING . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5027.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 61.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 25 30.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 18.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 98 A S 0 0 71 0, 0.0 76,-0.1 0, 0.0 48,-0.1 0.000 360.0 360.0 360.0 142.7 23.3 -26.6 7.7 2 99 A G + 0 0 3 46,-0.5 46,-2.8 47,-0.1 2,-0.4 0.037 360.0 127.6-102.7 22.6 25.7 -24.8 5.4 3 100 A N E +A 47 0A 50 44,-0.2 73,-2.0 46,-0.1 74,-0.4 -0.692 32.4 176.6 -87.2 129.0 23.9 -21.4 5.8 4 101 A I E -AB 46 75A 0 42,-2.8 42,-2.2 -2,-0.4 2,-0.3 -0.941 17.8-150.6-124.8 150.9 25.9 -18.3 6.8 5 102 A F E -AB 45 74A 52 69,-2.3 69,-2.2 -2,-0.3 2,-0.4 -0.923 8.4-155.5-113.9 151.7 25.0 -14.6 7.3 6 103 A I E -AB 44 73A 0 38,-2.5 38,-2.6 -2,-0.3 3,-0.3 -0.995 13.9-168.6-130.5 122.5 27.5 -11.8 6.7 7 104 A K E +AB 43 72A 83 65,-2.5 65,-1.7 -2,-0.4 36,-0.2 -0.721 60.0 33.3-117.5 159.3 27.0 -8.5 8.4 8 105 A N S S+ 0 0 88 34,-0.5 2,-0.3 -2,-0.3 -1,-0.2 0.820 75.1 167.1 63.6 33.6 28.5 -5.1 8.1 9 106 A L - 0 0 4 33,-2.1 -1,-0.2 -3,-0.3 2,-0.1 -0.577 45.9-104.4 -70.4 138.1 29.0 -5.4 4.3 10 107 A D > - 0 0 29 56,-0.3 3,-1.6 -2,-0.3 32,-0.1 -0.415 31.0-126.5 -57.3 138.7 29.8 -2.3 2.4 11 108 A K T 3 S+ 0 0 133 1,-0.3 29,-0.4 29,-0.1 -1,-0.1 0.556 104.6 68.3 -76.0 -7.9 26.6 -1.4 0.6 12 109 A S T 3 S+ 0 0 88 2,-0.1 2,-0.4 30,-0.1 -1,-0.3 0.531 75.4 103.5 -83.6 -10.1 28.3 -1.3 -2.8 13 110 A I < - 0 0 12 -3,-1.6 2,-0.2 4,-0.1 29,-0.1 -0.628 55.7-170.1 -73.3 127.6 28.8 -5.1 -2.7 14 111 A D > - 0 0 84 -2,-0.4 4,-2.3 26,-0.0 5,-0.2 -0.519 40.5 -84.6-108.9-179.5 26.3 -6.8 -5.0 15 112 A N H > S+ 0 0 82 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.867 126.8 49.9 -56.3 -41.3 25.4 -10.5 -5.4 16 113 A K H > S+ 0 0 141 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.897 110.6 49.0 -67.2 -42.8 28.3 -11.2 -7.8 17 114 A A H > S+ 0 0 30 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.888 112.0 50.3 -60.3 -40.7 30.9 -9.6 -5.6 18 115 A L H X S+ 0 0 0 -4,-2.3 4,-1.9 2,-0.2 -2,-0.2 0.939 111.0 48.3 -62.2 -47.0 29.5 -11.7 -2.7 19 116 A Y H X S+ 0 0 109 -4,-2.6 4,-2.4 1,-0.2 -2,-0.2 0.924 110.2 52.3 -57.3 -49.0 29.7 -14.9 -4.8 20 117 A D H < S+ 0 0 105 -4,-2.7 4,-0.3 1,-0.2 -1,-0.2 0.832 110.1 48.9 -58.4 -34.1 33.2 -14.0 -5.7 21 118 A T H < S+ 0 0 38 -4,-1.7 -1,-0.2 -3,-0.1 -2,-0.2 0.855 122.9 30.1 -72.3 -35.5 34.2 -13.6 -2.1 22 119 A F H >< S+ 0 0 0 -4,-1.9 3,-1.6 -3,-0.2 4,-0.4 0.594 91.1 88.2-107.4 -9.6 32.7 -16.9 -0.8 23 120 A S G >< S+ 0 0 44 -4,-2.4 3,-0.6 1,-0.3 -1,-0.1 0.729 78.2 73.2 -65.8 -21.9 32.9 -19.3 -3.8 24 121 A A G 3 S+ 0 0 84 -4,-0.3 -1,-0.3 1,-0.2 -2,-0.1 0.829 92.3 54.7 -51.6 -37.3 36.4 -20.3 -2.5 25 122 A F G < S- 0 0 29 -3,-1.6 2,-0.3 1,-0.2 -1,-0.2 0.652 117.6 -50.9 -88.2 -17.8 35.0 -22.3 0.4 26 123 A G S < S- 0 0 25 -3,-0.6 2,-0.5 -4,-0.4 -1,-0.2 -0.985 79.7 -35.1 169.6-175.3 32.6 -24.7 -1.1 27 124 A N - 0 0 89 -2,-0.3 22,-2.3 -3,-0.1 2,-0.5 -0.622 55.8-146.1 -72.7 120.9 29.7 -25.3 -3.5 28 125 A I E -C 48 0A 18 -2,-0.5 20,-0.2 20,-0.2 3,-0.1 -0.816 19.6-178.2 -95.9 124.6 27.3 -22.4 -3.3 29 126 A L E S- 0 0 86 18,-3.1 2,-0.3 -2,-0.5 -1,-0.2 0.845 71.5 -18.7 -83.9 -46.2 23.6 -23.1 -3.7 30 127 A S E -C 47 0A 69 17,-1.1 17,-3.0 2,-0.0 -1,-0.4 -0.986 59.3-178.9-154.7 162.3 22.5 -19.5 -3.4 31 128 A C E +C 46 0A 26 -2,-0.3 2,-0.3 15,-0.2 15,-0.2 -0.920 8.1 167.3-166.1 142.7 23.6 -16.2 -2.2 32 129 A K E -C 45 0A 95 13,-2.1 13,-2.8 -2,-0.3 2,-0.5 -0.997 34.5-125.7-155.4 150.2 22.3 -12.8 -2.0 33 130 A V E -C 44 0A 12 -2,-0.3 2,-0.3 11,-0.2 11,-0.3 -0.888 40.8-123.0 -92.8 127.6 22.7 -9.3 -0.5 34 131 A V E +C 43 0A 18 9,-2.4 7,-3.2 -2,-0.5 9,-0.5 -0.572 38.3 178.0 -76.3 132.4 19.5 -8.3 1.3 35 132 A C E -C 40 0A 85 -2,-0.3 5,-0.2 5,-0.3 2,-0.2 -0.947 17.5-164.1-136.2 154.3 18.0 -5.1 -0.0 36 133 A D E > -C 39 0A 75 3,-2.3 3,-1.5 -2,-0.3 5,-0.0 -0.368 57.3 -64.7-115.5-160.7 14.9 -2.9 0.6 37 134 A E T 3 S+ 0 0 164 1,-0.3 3,-0.1 -2,-0.2 -2,-0.0 0.791 133.4 50.0 -60.1 -28.8 13.3 -0.1 -1.5 38 135 A N T 3 S- 0 0 142 1,-0.3 -1,-0.3 2,-0.0 2,-0.2 0.054 117.9 -97.5-104.9 23.1 16.5 2.0 -1.0 39 136 A G E < S+ C 0 36A 34 -3,-1.5 -3,-2.3 2,-0.0 -1,-0.3 -0.544 79.5 11.3 101.8-163.0 19.2 -0.5 -2.0 40 137 A S E - C 0 35A 23 -29,-0.4 -5,-0.3 -5,-0.2 -29,-0.1 -0.125 49.4-152.8 -51.7 140.5 21.5 -2.8 -0.1 41 138 A K E - 0 0 83 -7,-3.2 -6,-0.1 2,-0.3 -1,-0.1 0.324 47.9-107.5 -97.1 5.7 20.7 -3.3 3.6 42 139 A G E S+ 0 0 10 -8,-0.4 -33,-2.1 1,-0.2 -34,-0.5 0.689 86.7 88.1 81.2 18.3 24.4 -4.1 4.3 43 140 A Y E -AC 7 34A 47 -9,-0.5 -9,-2.4 -35,-0.2 -2,-0.3 -0.980 51.4-163.6-144.1 160.2 24.1 -7.8 4.9 44 141 A G E -AC 6 33A 0 -38,-2.6 -38,-2.5 -2,-0.3 2,-0.4 -0.906 11.9-141.2-141.5 165.7 24.1 -11.0 3.0 45 142 A F E -AC 5 32A 57 -13,-2.8 -13,-2.1 -2,-0.3 2,-0.4 -0.980 10.8-172.6-126.9 139.7 23.4 -14.7 3.0 46 143 A V E -AC 4 31A 1 -42,-2.2 -42,-2.8 -2,-0.4 2,-0.7 -0.992 8.5-159.1-132.9 126.8 25.3 -17.6 1.5 47 144 A H E -AC 3 30A 64 -17,-3.0 -18,-3.1 -2,-0.4 -17,-1.1 -0.911 13.4-169.0-105.0 105.0 23.9 -21.1 1.4 48 145 A F E - C 0 28A 0 -46,-2.8 -46,-0.5 -2,-0.7 -20,-0.2 -0.656 29.7-124.9 -89.0 155.4 26.6 -23.7 1.0 49 146 A E S S+ 0 0 125 -22,-2.3 2,-0.3 -2,-0.3 -47,-0.1 0.848 92.3 41.1 -61.5 -37.6 25.9 -27.4 0.3 50 147 A T > - 0 0 53 -23,-0.3 4,-1.4 -48,-0.2 -2,-0.1 -0.869 69.8-134.4-121.4 152.7 27.9 -28.5 3.4 51 148 A Q H > S+ 0 0 71 -2,-0.3 4,-2.1 1,-0.2 5,-0.2 0.872 108.5 59.2 -59.6 -41.7 28.5 -27.4 7.0 52 149 A E H > S+ 0 0 113 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.866 102.5 52.9 -60.7 -36.2 32.2 -27.9 6.5 53 150 A A H > S+ 0 0 0 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.920 107.9 50.8 -63.8 -45.3 32.2 -25.3 3.8 54 151 A A H X S+ 0 0 0 -4,-1.4 4,-2.4 1,-0.2 -2,-0.2 0.889 109.7 50.6 -56.8 -41.4 30.4 -22.8 6.1 55 152 A E H X S+ 0 0 77 -4,-2.1 4,-2.4 2,-0.2 -1,-0.2 0.866 109.0 50.8 -67.7 -37.7 33.0 -23.4 8.8 56 153 A R H X S+ 0 0 125 -4,-2.0 4,-2.0 2,-0.2 5,-0.2 0.908 110.8 49.8 -63.5 -43.3 35.9 -22.8 6.3 57 154 A A H X S+ 0 0 0 -4,-2.3 4,-2.8 2,-0.2 5,-0.4 0.916 112.7 46.0 -60.9 -45.7 34.2 -19.5 5.3 58 155 A I H X S+ 0 0 31 -4,-2.4 4,-2.0 2,-0.2 -2,-0.2 0.930 110.5 53.7 -63.0 -46.1 33.8 -18.4 8.9 59 156 A E H < S+ 0 0 168 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.915 120.1 31.8 -56.0 -46.5 37.4 -19.4 9.8 60 157 A K H < S+ 0 0 129 -4,-2.0 -1,-0.2 -5,-0.1 -2,-0.2 0.850 129.4 31.3 -81.4 -37.4 38.8 -17.3 6.9 61 158 A M H >< S+ 0 0 10 -4,-2.8 3,-2.0 -5,-0.2 10,-0.3 0.673 81.0 108.8-104.4 -24.1 36.4 -14.4 6.6 62 159 A N T 3< S+ 0 0 75 -4,-2.0 10,-0.2 -5,-0.4 3,-0.1 -0.430 98.2 5.0 -62.1 124.1 34.9 -13.6 10.1 63 160 A G T 3 S+ 0 0 35 8,-2.9 -1,-0.3 1,-0.3 9,-0.1 0.404 101.2 134.1 84.0 -1.3 36.4 -10.3 11.3 64 161 A M < - 0 0 75 -3,-2.0 7,-2.5 7,-0.2 2,-0.5 -0.368 62.6 -99.4 -81.0 158.6 38.3 -9.6 8.0 65 162 A L E +D 70 0B 102 5,-0.2 2,-0.5 -3,-0.1 5,-0.2 -0.675 35.4 176.3 -78.9 121.1 38.4 -6.4 6.0 66 163 A L E > S-D 69 0B 27 3,-2.5 3,-1.2 -2,-0.5 -56,-0.3 -0.965 76.0 -37.8-122.2 110.4 36.0 -6.1 3.1 67 164 A N T 3 S- 0 0 85 -2,-0.5 -58,-0.0 1,-0.2 0, 0.0 -0.546 123.3 -31.8 61.7-135.2 36.5 -2.6 1.8 68 165 A D T 3 S+ 0 0 153 -2,-0.2 2,-0.4 -3,-0.1 -1,-0.2 0.311 124.6 85.6 -90.3 10.5 36.9 -0.3 4.9 69 166 A R E < S-D 66 0B 104 -3,-1.2 -3,-2.5 -61,-0.0 2,-0.3 -0.933 73.7-130.1-128.9 127.3 34.7 -2.4 7.0 70 167 A K E -D 65 0B 138 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.585 31.7-145.0 -70.3 130.9 35.2 -5.5 9.2 71 168 A V - 0 0 3 -7,-2.5 -8,-2.9 -2,-0.3 2,-0.4 -0.763 3.5-141.9 -97.4 147.8 32.6 -8.1 8.4 72 169 A F E -B 7 0A 97 -65,-1.7 -65,-2.5 -2,-0.3 2,-0.4 -0.899 17.5-170.7 -98.4 137.3 31.0 -10.5 10.8 73 170 A V E +B 6 0A 2 -2,-0.4 2,-0.3 -67,-0.2 -67,-0.2 -1.000 15.5 160.0-127.9 128.1 30.4 -14.0 9.4 74 171 A G E -B 5 0A 8 -69,-2.2 -69,-2.3 -2,-0.4 2,-0.2 -0.971 39.6-101.4-145.5 158.2 28.3 -16.6 11.4 75 172 A R E -B 4 0A 44 -2,-0.3 -71,-0.2 -71,-0.2 3,-0.1 -0.578 20.6-139.1 -74.4 143.1 26.3 -19.8 11.1 76 173 A F S S+ 0 0 104 -73,-2.0 2,-0.4 -2,-0.2 -1,-0.1 0.907 96.3 28.4 -61.5 -44.3 22.5 -19.5 11.0 77 174 A K S S- 0 0 53 -74,-0.4 -1,-0.2 -76,-0.1 2,-0.1 -0.983 85.1-137.3-123.4 131.5 22.3 -22.6 13.3 78 175 A S - 0 0 111 -2,-0.4 3,-0.1 1,-0.1 -2,-0.0 -0.428 31.0 -90.9 -84.9 159.4 25.0 -23.5 15.8 79 176 A R - 0 0 65 1,-0.1 -1,-0.1 -2,-0.1 2,-0.1 -0.318 54.9 -87.6 -64.8 151.8 26.4 -27.0 16.4 80 177 A K 0 0 109 -2,-0.0 -1,-0.1 1,-0.0 0, 0.0 -0.351 360.0 360.0 -65.2 139.2 24.7 -29.1 19.1 81 178 A E 0 0 153 -3,-0.1 -3,-0.0 -2,-0.1 -1,-0.0 -0.963 360.0 360.0-151.8 360.0 26.1 -28.6 22.7