==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN,TRANSCRIPTION 07-JUN-00 1F4I . COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN PROTEIN RAD23 HOMOLOG . SOURCE 2 SYNTHETIC: YES; . AUTHOR E.S.WITHERS-WARD,T.D.MUELLER,I.S.CHEN,J.FEIGON . 45 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3972.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 30 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 13.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 46.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A Q 0 0 215 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 172.4 31.1 -6.1 -10.9 2 2 A E >> + 0 0 14 2,-0.1 3,-1.3 1,-0.1 4,-1.1 0.305 360.0 111.6-120.3 1.9 31.5 -4.3 -7.6 3 3 A K H 3> S+ 0 0 127 1,-0.3 4,-1.2 2,-0.2 5,-0.1 0.681 71.9 66.0 -51.7 -21.3 31.3 -0.7 -9.0 4 4 A E H 34 S+ 0 0 155 1,-0.2 4,-0.5 2,-0.2 -1,-0.3 0.918 104.2 41.2 -65.9 -47.8 27.9 -0.4 -7.3 5 5 A A H <> S+ 0 0 12 -3,-1.3 4,-3.0 1,-0.2 5,-0.3 0.676 102.8 74.7 -72.6 -17.1 29.6 -0.6 -3.9 6 6 A I H X S+ 0 0 9 -4,-1.1 4,-2.3 1,-0.2 -2,-0.2 0.947 98.5 41.8 -64.5 -47.2 32.4 1.7 -5.1 7 7 A E H X S+ 0 0 144 -4,-1.2 4,-1.0 -3,-0.2 -1,-0.2 0.689 116.7 52.8 -67.6 -18.6 30.3 4.8 -5.0 8 8 A R H > S+ 0 0 180 -4,-0.5 4,-0.7 2,-0.2 -2,-0.2 0.945 109.6 44.4 -79.6 -53.4 28.9 3.6 -1.7 9 9 A L H >< S+ 0 0 8 -4,-3.0 3,-0.7 1,-0.2 5,-0.5 0.868 117.6 48.2 -53.8 -44.4 32.3 3.0 -0.0 10 10 A K H >X S+ 0 0 92 -4,-2.3 3,-1.8 -5,-0.3 4,-1.1 0.831 102.3 63.0 -67.4 -34.6 33.3 6.4 -1.5 11 11 A A H 3< S+ 0 0 85 -4,-1.0 -1,-0.2 1,-0.3 -2,-0.2 0.682 87.7 70.7 -67.8 -18.0 30.0 8.0 -0.2 12 12 A L T << S- 0 0 83 -4,-0.7 -1,-0.3 -3,-0.7 -2,-0.2 0.390 133.1 -87.9 -77.1 4.2 31.2 7.2 3.4 13 13 A G T <4 S+ 0 0 68 -3,-1.8 -2,-0.2 1,-0.1 -3,-0.2 0.696 97.4 108.2 100.0 25.1 33.8 10.0 2.8 14 14 A F < - 0 0 52 -4,-1.1 2,-0.3 -5,-0.5 -4,-0.1 0.176 65.8 -99.1-109.2-140.7 36.5 7.8 1.2 15 15 A E >> - 0 0 119 -6,-0.0 4,-2.3 -2,-0.0 3,-0.6 -0.948 23.4-115.4-161.5 136.0 38.0 7.3 -2.3 16 16 A E H 3> S+ 0 0 106 -2,-0.3 4,-1.7 1,-0.3 5,-0.1 0.590 115.5 54.1 -48.1 -19.3 37.4 4.8 -5.1 17 17 A S H 3> S+ 0 0 96 2,-0.2 4,-2.3 3,-0.1 -1,-0.3 0.937 112.2 38.3 -81.0 -54.5 41.1 3.7 -4.7 18 18 A L H <> S+ 0 0 62 -3,-0.6 4,-0.6 1,-0.2 -2,-0.2 0.766 119.1 55.9 -65.0 -22.2 41.0 2.9 -0.9 19 19 A V H X S+ 0 0 0 -4,-2.3 4,-0.7 2,-0.2 -2,-0.2 0.928 106.9 44.2 -69.7 -57.8 37.5 1.5 -1.8 20 20 A I H >X S+ 0 0 64 -4,-1.7 3,-1.3 1,-0.2 4,-0.9 0.941 117.3 45.3 -56.8 -50.8 38.6 -0.9 -4.5 21 21 A Q H 3X S+ 0 0 122 -4,-2.3 4,-1.2 1,-0.3 -1,-0.2 0.722 114.2 51.0 -67.2 -21.7 41.5 -2.2 -2.4 22 22 A A H 3< S+ 0 0 0 -4,-0.6 -1,-0.3 -5,-0.2 14,-0.2 0.496 116.6 40.0 -88.0 -9.2 39.1 -2.3 0.6 23 23 A Y H <<>S+ 0 0 25 -3,-1.3 5,-1.5 -4,-0.7 -2,-0.2 0.319 121.3 41.6-117.7 -2.3 36.5 -4.3 -1.5 24 24 A F H ><5S+ 0 0 118 -4,-0.9 3,-1.2 3,-0.2 -3,-0.2 0.699 116.3 45.8-111.3 -39.7 39.0 -6.6 -3.3 25 25 A A T 3<5S+ 0 0 69 -4,-1.2 -3,-0.2 -5,-0.3 -4,-0.1 0.775 112.1 55.4 -70.8 -26.9 41.3 -7.3 -0.3 26 26 A C T 3 5S- 0 0 9 -5,-0.1 -1,-0.3 3,-0.1 7,-0.1 0.278 123.3-109.9 -84.0 7.1 38.1 -7.9 1.6 27 27 A E T < 5 - 0 0 166 -3,-1.2 -3,-0.2 1,-0.2 -2,-0.1 0.955 62.4 -67.8 57.0 54.2 37.1 -10.5 -1.0 28 28 A K S S+ 0 0 146 -4,-0.1 4,-2.4 -2,-0.1 5,-0.2 0.427 95.1 31.1-135.2 -76.5 29.9 -6.0 2.4 31 31 A N H > S+ 0 0 145 1,-0.2 4,-1.8 2,-0.2 5,-0.0 0.724 122.2 55.9 -60.6 -23.4 30.2 -5.6 6.2 32 32 A L H > S+ 0 0 74 2,-0.2 4,-1.9 3,-0.1 -1,-0.2 0.911 106.9 46.6 -75.8 -45.5 33.9 -6.6 5.6 33 33 A A H > S+ 0 0 0 2,-0.2 4,-2.2 1,-0.2 5,-0.2 0.927 113.8 47.9 -62.8 -47.8 34.6 -3.9 3.1 34 34 A A H X S+ 0 0 29 -4,-2.4 4,-2.4 1,-0.2 5,-0.3 0.949 110.8 52.0 -55.9 -49.0 33.0 -1.2 5.3 35 35 A N H X S+ 0 0 105 -4,-1.8 4,-1.5 1,-0.2 -1,-0.2 0.838 108.4 53.4 -57.9 -33.0 34.9 -2.5 8.3 36 36 A F H X S+ 0 0 46 -4,-1.9 4,-0.6 -14,-0.2 -1,-0.2 0.963 113.2 39.8 -62.3 -55.2 38.1 -2.2 6.2 37 37 A L H < S+ 0 0 6 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.774 119.6 45.6 -69.3 -29.2 37.6 1.4 5.3 38 38 A L H < S+ 0 0 103 -4,-2.4 -1,-0.2 -5,-0.2 -2,-0.2 0.733 112.5 51.6 -85.9 -25.2 36.3 2.5 8.7 39 39 A S H < S+ 0 0 72 -4,-1.5 2,-1.8 -5,-0.3 -2,-0.2 0.469 80.3 107.0 -89.4 -6.4 39.1 0.5 10.5 40 40 A Q S < S- 0 0 109 -4,-0.6 -1,-0.1 -5,-0.1 -4,-0.0 -0.606 72.2-142.0 -77.6 87.5 41.7 2.3 8.3 41 41 A N + 0 0 145 -2,-1.8 2,-0.2 1,-0.0 -2,-0.1 -0.256 39.7 148.2 -49.2 125.0 43.0 4.6 11.1 42 42 A F + 0 0 172 -2,-0.0 2,-0.1 0, 0.0 -2,-0.0 -0.714 10.2 159.7-173.7 110.5 43.8 8.0 9.6 43 43 A D - 0 0 95 2,-0.7 0, 0.0 -2,-0.2 0, 0.0 -0.110 66.8 -40.1-110.7-149.7 43.7 11.4 11.2 44 44 A D 0 0 162 1,-0.2 0, 0.0 -2,-0.1 0, 0.0 0.886 360.0 360.0 -42.4 -55.7 45.2 14.8 10.5 45 45 A E 0 0 182 0, 0.0 -2,-0.7 0, 0.0 -1,-0.2 -0.868 360.0 360.0 -95.3 360.0 48.5 13.1 9.6