==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 09-JUN-00 1F4S . COMPND 2 MOLECULE: DNA (5'-D(P*CP*GP*TP*GP*CP*GP*GP*AP*TP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR B.CAHUZAC,R.CERDAN,B.FELENBOK,E.GUITTET . 65 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5290.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 24 36.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 24.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -1 P G 0 0 95 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -80.5 28.9 -8.6 -30.9 2 0 P S + 0 0 125 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.378 360.0 3.6-150.0 -50.3 28.9 -4.8 -30.8 3 1 P M S > S+ 0 0 96 2,-0.1 4,-0.9 3,-0.0 3,-0.3 0.107 105.4 90.2-133.8 19.3 26.9 -3.5 -27.9 4 2 P A T 4 S+ 0 0 34 1,-0.2 -1,-0.0 2,-0.2 4,-0.0 0.539 81.1 60.8 -92.2 -10.1 25.8 -6.8 -26.2 5 3 P D T 4 S+ 0 0 143 1,-0.1 -1,-0.2 0, 0.0 3,-0.1 0.370 106.3 45.9 -97.8 4.3 28.9 -6.8 -24.0 6 4 P T T 4 S- 0 0 84 1,-0.4 2,-0.3 -3,-0.3 -2,-0.2 0.715 121.3 -65.4-112.7 -36.5 28.0 -3.5 -22.3 7 5 P R S < S+ 0 0 186 -4,-0.9 -1,-0.4 1,-0.2 -4,-0.0 -0.982 79.2 83.9 172.4-169.6 24.3 -4.0 -21.6 8 6 P R + 0 0 174 -2,-0.3 -1,-0.2 -3,-0.1 -2,-0.1 0.520 66.7 64.4 64.0 148.8 20.8 -4.4 -23.0 9 7 P R + 0 0 177 0, 0.0 -1,-0.1 0, 0.0 -5,-0.0 0.701 62.0 117.9 81.5 24.0 19.0 -7.6 -24.2 10 8 P Q S S- 0 0 175 17,-0.0 13,-0.0 0, 0.0 -3,-0.0 0.839 101.9 -31.3 -88.9 -33.7 18.9 -9.4 -20.9 11 9 P N S S- 0 0 44 16,-0.1 -3,-0.0 15,-0.1 0, 0.0 0.269 82.4-113.8-169.9 17.6 15.1 -9.6 -20.6 12 10 P H - 0 0 58 15,-0.1 2,-0.1 16,-0.1 11,-0.0 0.781 37.1-127.7 39.9 119.3 13.6 -6.6 -22.3 13 11 P S - 0 0 17 1,-0.2 10,-0.1 2,-0.1 5,-0.0 -0.272 24.8 -80.0 -91.2 177.5 11.8 -4.2 -19.8 14 12 P C >> - 0 0 0 8,-0.2 4,-2.4 1,-0.1 3,-0.6 -0.241 43.0-100.2 -74.3 165.3 8.3 -2.7 -19.6 15 13 P D H 3> S+ 0 0 58 37,-1.3 4,-1.3 35,-0.3 5,-0.1 0.907 126.1 44.0 -46.8 -52.5 7.0 0.4 -21.3 16 14 P P H 3> S+ 0 0 8 0, 0.0 4,-1.2 0, 0.0 -1,-0.3 0.742 109.9 58.2 -69.3 -22.7 7.5 2.6 -18.2 17 15 P C H <>>S+ 0 0 1 -3,-0.6 5,-2.3 2,-0.2 4,-1.3 0.886 103.7 49.5 -76.0 -37.9 10.9 1.0 -17.7 18 16 P R H <5S+ 0 0 94 -4,-2.4 -1,-0.2 1,-0.2 -3,-0.1 0.833 119.1 40.4 -68.0 -30.6 12.1 2.1 -21.1 19 17 P K H <5S+ 0 0 149 -4,-1.3 -2,-0.2 -5,-0.3 -1,-0.2 0.632 119.1 45.1 -91.6 -16.4 10.9 5.6 -20.2 20 18 P G H <5S- 0 0 34 -4,-1.2 -2,-0.2 2,-0.1 -3,-0.2 0.498 109.7-121.8-102.0 -7.5 12.1 5.5 -16.6 21 19 P K T <5 + 0 0 188 -4,-1.3 2,-0.4 1,-0.2 -3,-0.2 0.977 63.7 133.4 66.6 58.1 15.4 4.0 -17.5 22 20 P R < - 0 0 115 -5,-2.3 -1,-0.2 -8,-0.2 -8,-0.2 -0.979 49.2-139.0-147.4 137.0 15.2 0.9 -15.5 23 21 P R + 0 0 180 -2,-0.4 2,-0.3 -10,-0.1 20,-0.1 -0.263 36.9 161.4 -75.7 168.7 15.9 -2.8 -16.0 24 22 P C - 0 0 12 1,-0.1 -1,-0.0 2,-0.1 17,-0.0 -0.966 48.6 -90.6-171.5-172.5 13.5 -5.4 -14.5 25 23 P D S S+ 0 0 86 -2,-0.3 -1,-0.1 2,-0.1 5,-0.1 0.936 80.4 103.8 -80.8 -55.9 11.9 -8.8 -14.1 26 24 P A + 0 0 0 -3,-0.1 -2,-0.1 2,-0.1 26,-0.1 -0.028 60.1 173.3 -35.0 97.0 9.0 -8.5 -16.5 27 25 P P > - 0 0 27 0, 0.0 3,-1.8 0, 0.0 4,-0.2 -0.061 52.3 -65.5 -97.8-159.7 10.6 -10.7 -19.2 28 26 P E T 3 S+ 0 0 168 1,-0.3 4,-0.2 2,-0.1 3,-0.1 0.494 137.1 50.6 -71.6 -0.5 9.6 -12.2 -22.5 29 27 P N T 3> + 0 0 79 2,-0.1 4,-1.5 1,-0.1 -1,-0.3 0.053 68.1 117.6-123.8 23.9 7.2 -14.3 -20.4 30 28 P R H <> S+ 0 0 6 -3,-1.8 4,-2.4 2,-0.2 5,-0.2 0.871 81.6 51.4 -57.9 -33.3 5.6 -11.4 -18.5 31 29 P N H > S+ 0 0 68 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.975 109.4 45.9 -66.2 -54.3 2.5 -12.5 -20.2 32 30 P E H > S+ 0 0 118 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.705 108.8 62.1 -61.8 -15.0 2.9 -16.1 -19.2 33 31 P A H < S+ 0 0 8 -4,-1.5 3,-0.3 2,-0.2 -2,-0.2 0.961 100.2 47.9 -74.6 -51.1 3.7 -14.4 -15.8 34 32 P N H >< S+ 0 0 78 -4,-2.4 3,-0.9 3,-0.3 -2,-0.2 0.882 110.0 56.6 -53.9 -34.1 0.2 -12.9 -15.6 35 33 P E H 3< S+ 0 0 154 -4,-2.0 -1,-0.3 1,-0.3 -2,-0.2 0.921 116.5 32.2 -63.2 -42.5 -0.8 -16.5 -16.5 36 34 P N T 3< S- 0 0 124 -4,-1.7 -1,-0.3 -3,-0.3 -2,-0.2 0.150 138.7 -90.0 -97.8 17.5 1.1 -17.7 -13.5 37 35 P G < + 0 0 51 -3,-0.9 -3,-0.3 -6,-0.2 -2,-0.2 0.921 58.7 174.5 71.4 99.8 0.1 -14.5 -11.8 38 36 P W + 0 0 68 -7,-0.1 2,-0.1 1,-0.1 -7,-0.1 0.419 5.2 178.7 -99.1-123.1 2.6 -11.6 -12.3 39 37 P V - 0 0 72 -9,-0.1 2,-0.2 12,-0.1 12,-0.2 -0.521 55.2 -27.2 156.9 -82.1 1.8 -8.1 -11.1 40 38 P S - 0 0 28 -2,-0.1 8,-0.1 10,-0.1 6,-0.0 -0.799 55.4-123.3-169.9 122.9 4.5 -5.4 -11.6 41 39 P C > - 0 0 1 -2,-0.2 4,-1.3 1,-0.1 5,-0.1 0.202 53.7 -79.8 -53.3-173.6 8.2 -5.6 -11.9 42 40 P S H > S+ 0 0 41 3,-0.2 4,-2.3 2,-0.2 5,-0.1 0.800 131.8 48.0 -64.4 -26.1 10.4 -3.6 -9.5 43 41 P N H > S+ 0 0 1 2,-0.2 4,-2.5 1,-0.2 5,-0.3 0.976 112.1 40.1 -76.3 -77.6 9.6 -0.5 -11.7 44 42 P C H 4>S+ 0 0 0 1,-0.2 5,-0.8 2,-0.2 -2,-0.2 0.792 118.7 59.4 -43.1 -24.8 5.9 -0.5 -12.3 45 43 P K H ><5S+ 0 0 119 -4,-1.3 3,-1.8 3,-0.2 -1,-0.2 0.994 105.9 38.7 -68.7 -66.0 6.0 -1.6 -8.6 46 44 P R H 3<5S+ 0 0 177 -4,-2.3 -2,-0.2 1,-0.3 -1,-0.2 0.783 132.5 31.7 -58.0 -28.1 7.8 1.4 -7.1 47 45 P W T 3<5S- 0 0 118 -4,-2.5 -1,-0.3 -5,-0.1 -2,-0.2 0.082 99.6-130.9-117.7 22.7 5.9 3.7 -9.4 48 46 P N T < 5 + 0 0 136 -3,-1.8 -3,-0.2 -5,-0.3 -4,-0.2 0.819 57.3 153.7 28.1 47.2 2.7 1.6 -9.6 49 47 P K < - 0 0 82 -5,-0.8 -5,-0.0 -6,-0.3 -1,-0.0 0.693 55.4 -74.3 -72.8-124.1 3.1 2.2 -13.3 50 48 P D - 0 0 108 2,-0.1 -35,-0.3 0, 0.0 2,-0.2 -0.413 33.2-149.3-146.6 69.1 1.8 -0.2 -15.9 51 49 P C + 0 0 11 -12,-0.2 2,-0.4 -37,-0.1 -12,-0.1 -0.067 40.9 164.7 -37.6 91.2 3.7 -3.4 -16.2 52 50 P T + 0 0 20 -2,-0.2 -37,-1.3 1,-0.1 -2,-0.1 -0.979 36.5 155.9-133.0 132.5 2.9 -3.9 -19.9 53 51 P F S > S+ 0 0 2 -2,-0.4 4,-0.7 -39,-0.1 -22,-0.1 -0.129 71.5 79.2-129.7 22.7 4.4 -6.0 -22.6 54 52 P N H > S+ 0 0 72 2,-0.2 4,-2.0 3,-0.1 5,-0.4 0.852 90.3 41.0 -97.7 -74.4 1.1 -5.9 -24.6 55 53 P W H > S+ 0 0 66 1,-0.3 4,-0.5 2,-0.2 5,-0.1 0.847 121.7 54.6 -42.8 -29.2 0.9 -2.6 -26.4 56 54 P L H >>>S+ 0 0 17 2,-0.3 4,-2.0 1,-0.2 5,-0.8 0.948 100.5 52.1 -70.4 -53.0 4.5 -3.7 -26.8 57 55 P S H 3<5S+ 0 0 67 -4,-0.7 -1,-0.2 1,-0.3 -2,-0.2 0.678 123.9 33.8 -59.5 -13.5 3.8 -7.1 -28.2 58 56 P S H 3<5S+ 0 0 74 -4,-2.0 4,-0.4 3,-0.1 -1,-0.3 0.438 114.1 60.3-117.7 -7.4 1.7 -5.2 -30.7 59 57 P Q H <<5S+ 0 0 80 -3,-0.8 -3,-0.2 -4,-0.5 -2,-0.2 0.932 116.9 25.8 -86.0 -54.5 3.9 -2.0 -30.9 60 58 P R T <5S+ 0 0 94 -4,-2.0 -3,-0.1 1,-0.2 -4,-0.1 0.743 119.1 61.5 -80.1 -24.5 7.2 -3.5 -32.1 61 59 P S S