==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 14-JUN-00 1F5E . COMPND 2 MOLECULE: DNA (5'-D(P*CP*GP*TP*GP*CP*GP*GP*AP*TP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR B.CAHUZAC,R.CERDAN,B.FELENBOK,E.GUITTET . 65 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4683.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 25 38.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 15 23.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -1 P G 0 0 74 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 92.7 34.0 -4.8 -23.6 2 0 P S + 0 0 37 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.031 360.0 23.4 -98.4 -70.1 32.7 -3.7 -22.7 3 1 P M S > S+ 0 0 59 -2,-0.3 3,-0.7 4,-0.0 0, 0.0 -0.237 86.7 92.9-151.6 23.9 31.2 -2.3 -22.7 4 2 P A T 3 S+ 0 0 63 1,-0.4 2,-1.1 2,-0.1 3,-0.2 0.881 102.8 26.7 -81.7 -59.7 30.6 -2.4 -25.2 5 3 P D T 3 S+ 0 0 100 1,-0.2 -1,-0.4 0, 0.0 0, 0.0 -0.310 75.9 131.6 -97.6 54.9 28.6 -4.1 -24.7 6 4 P T < + 0 0 55 -2,-1.1 -1,-0.2 -3,-0.7 2,-0.2 0.208 62.5 25.4 -91.1 15.1 27.6 -3.8 -21.9 7 5 P R + 0 0 179 -3,-0.2 -3,-0.0 1,-0.1 -4,-0.0 -0.868 67.3 80.5-152.9-171.0 24.1 -3.6 -21.9 8 6 P R + 0 0 198 -2,-0.2 -1,-0.1 0, 0.0 0, 0.0 0.663 69.4 51.4 70.4 133.0 21.2 -4.6 -23.7 9 7 P R + 0 0 156 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 0.977 56.0 109.5 79.2 66.9 19.6 -7.8 -23.7 10 8 P Q S S- 0 0 141 17,-0.0 -3,-0.0 0, 0.0 13,-0.0 0.632 94.8 -26.8-131.4 -55.7 18.6 -9.5 -20.7 11 9 P N S S- 0 0 39 16,-0.1 18,-0.1 15,-0.1 12,-0.0 0.342 83.5-113.9-146.4 2.4 14.9 -9.7 -20.0 12 10 P H - 0 0 85 15,-0.1 2,-0.3 16,-0.1 12,-0.1 0.421 29.9-112.3 67.2 144.3 13.4 -6.8 -21.7 13 11 P S - 0 0 25 10,-0.1 10,-0.1 1,-0.1 5,-0.0 -0.781 26.8-101.5-112.6 156.8 11.8 -4.0 -19.8 14 12 P C >> - 0 0 0 -2,-0.3 4,-2.6 8,-0.2 3,-0.6 -0.241 41.7 -97.2 -71.3 163.2 8.2 -2.8 -19.5 15 13 P D H 3> S+ 0 0 38 37,-1.5 4,-1.4 1,-0.3 5,-0.1 0.906 128.3 43.6 -44.2 -51.4 6.8 0.2 -21.3 16 14 P P H 3> S+ 0 0 10 0, 0.0 4,-1.6 0, 0.0 -1,-0.3 0.787 110.2 58.3 -68.5 -26.3 7.3 2.4 -18.2 17 15 P C H <>>S+ 0 0 0 -3,-0.6 5,-1.6 2,-0.2 4,-1.1 0.961 104.8 47.0 -68.8 -50.9 10.7 0.8 -17.6 18 16 P R H <5S+ 0 0 89 -4,-2.6 -1,-0.2 1,-0.3 -3,-0.1 0.846 114.7 50.0 -59.0 -32.4 12.1 1.8 -21.0 19 17 P K H <5S+ 0 0 141 -4,-1.4 -1,-0.3 -5,-0.3 -2,-0.2 0.787 117.9 37.3 -77.5 -28.2 10.6 5.3 -20.4 20 18 P G H <5S- 0 0 42 -4,-1.6 -2,-0.2 -3,-0.4 -1,-0.2 0.365 113.8-117.0-102.4 2.5 12.2 5.6 -16.9 21 19 P K T <5 + 0 0 180 -4,-1.1 2,-0.4 1,-0.2 -3,-0.2 0.994 64.0 140.8 60.9 66.6 15.3 3.8 -18.0 22 20 P R < - 0 0 110 -5,-1.6 -1,-0.2 -8,-0.2 -8,-0.2 -0.985 47.4-131.8-146.6 138.4 15.1 0.8 -15.8 23 21 P R - 0 0 145 -2,-0.4 2,-0.3 -10,-0.1 20,-0.2 -0.274 37.2-175.2 -73.4 165.4 15.8 -2.9 -16.0 24 22 P C - 0 0 1 1,-0.1 -1,-0.0 -12,-0.1 17,-0.0 -0.968 43.1-116.9-161.0 177.3 13.3 -5.3 -14.8 25 23 P D S S+ 0 0 85 -2,-0.3 -1,-0.1 2,-0.1 5,-0.1 0.931 79.8 100.5 -80.8 -53.4 11.8 -8.6 -14.0 26 24 P A - 0 0 0 -3,-0.1 -2,-0.1 2,-0.1 26,-0.1 -0.085 62.7-177.5 -38.3 100.1 9.0 -8.6 -16.5 27 25 P P > - 0 0 44 0, 0.0 3,-2.2 0, 0.0 4,-0.3 -0.127 48.7 -69.4 -95.0-167.7 10.7 -10.9 -19.0 28 26 P E T 3 S+ 0 0 125 1,-0.3 4,-0.2 2,-0.1 3,-0.1 0.592 138.4 50.9 -64.0 -3.4 9.8 -12.1 -22.4 29 27 P N T 3> + 0 0 72 -18,-0.1 4,-1.5 2,-0.1 -1,-0.3 0.084 69.1 114.9-122.4 20.7 7.3 -14.1 -20.4 30 28 P R H <> S+ 0 0 9 -3,-2.2 4,-2.4 2,-0.2 5,-0.2 0.904 81.7 51.8 -56.9 -38.4 5.8 -11.4 -18.4 31 29 P N H > S+ 0 0 54 -4,-0.3 4,-1.9 1,-0.3 -1,-0.2 0.980 110.6 44.9 -61.2 -54.1 2.7 -12.1 -20.3 32 30 P E H > S+ 0 0 111 1,-0.2 4,-1.8 2,-0.2 -1,-0.3 0.704 108.2 63.9 -62.8 -15.1 2.9 -15.7 -19.4 33 31 P A H < S+ 0 0 15 -4,-1.5 -2,-0.2 2,-0.3 -1,-0.2 0.959 101.2 45.5 -73.0 -49.9 3.7 -14.3 -16.0 34 32 P N H >< S+ 0 0 70 -4,-2.4 3,-0.8 3,-0.4 -2,-0.2 0.854 110.5 57.5 -59.5 -30.1 0.3 -12.7 -15.7 35 33 P E H 3< S+ 0 0 125 -4,-1.9 -1,-0.3 1,-0.3 -2,-0.3 0.907 117.4 31.1 -65.9 -39.4 -0.8 -16.1 -17.0 36 34 P N T 3< S- 0 0 122 -4,-1.8 -1,-0.3 -3,-0.2 -2,-0.2 0.091 140.2 -85.9-102.6 20.1 0.9 -17.7 -14.0 37 35 P G < + 0 0 54 -3,-0.8 -3,-0.4 -6,-0.2 -2,-0.2 0.910 61.8 169.8 72.9 101.2 0.2 -14.6 -12.1 38 36 P W - 0 0 63 -7,-0.1 2,-0.2 1,-0.1 -7,-0.1 0.346 6.6-179.7-104.5-124.1 2.6 -11.7 -12.4 39 37 P V - 0 0 101 -9,-0.1 2,-0.3 12,-0.1 12,-0.2 -0.610 52.5 -23.7 158.7 -91.8 2.0 -8.2 -11.1 40 38 P S - 0 0 29 -2,-0.2 8,-0.0 10,-0.1 12,-0.0 -0.940 53.4-128.7-156.9 130.7 4.5 -5.5 -11.5 41 39 P C > - 0 0 1 -2,-0.3 4,-1.1 1,-0.1 5,-0.1 0.146 50.7 -80.9 -63.7-169.8 8.2 -5.5 -12.0 42 40 P S H > S+ 0 0 42 3,-0.2 4,-2.1 2,-0.2 5,-0.1 0.854 128.6 45.8 -66.1 -32.4 10.5 -3.4 -9.8 43 41 P N H > S+ 0 0 0 2,-0.2 4,-2.7 -20,-0.2 3,-0.4 0.987 113.7 39.9 -73.4 -78.5 9.7 -0.4 -11.8 44 42 P C H 4>S+ 0 0 1 1,-0.3 5,-1.3 2,-0.2 -1,-0.2 0.821 116.7 60.5 -43.3 -28.0 6.0 -0.3 -12.3 45 43 P K H ><5S+ 0 0 110 -4,-1.1 3,-1.5 3,-0.2 -1,-0.3 0.983 106.3 39.2 -65.8 -57.8 6.1 -1.4 -8.8 46 44 P R H 3<5S+ 0 0 145 -4,-2.1 -2,-0.2 -3,-0.4 -1,-0.2 0.849 130.3 34.2 -61.5 -33.3 7.9 1.6 -7.3 47 45 P W T 3<5S- 0 0 135 -4,-2.7 -1,-0.3 -5,-0.1 -2,-0.2 0.071 101.0-130.8-109.3 23.5 5.9 3.8 -9.6 48 46 P N T < 5 + 0 0 119 -3,-1.5 -3,-0.2 -5,-0.3 -4,-0.2 0.811 59.2 150.9 27.9 44.4 2.7 1.8 -9.6 49 47 P K < - 0 0 110 -5,-1.3 -1,-0.0 -6,-0.2 -5,-0.0 0.712 56.5 -75.8 -72.7-123.1 3.0 2.2 -13.3 50 48 P D - 0 0 74 2,-0.1 -35,-0.2 0, 0.0 2,-0.2 -0.440 33.6-150.0-150.0 72.6 1.7 -0.4 -15.7 51 49 P C + 0 0 15 -12,-0.2 2,-0.4 -37,-0.1 -12,-0.1 -0.157 41.4 156.1 -43.1 101.6 3.8 -3.5 -16.1 52 50 P T + 0 0 25 -2,-0.2 -37,-1.5 1,-0.1 -2,-0.1 -0.989 38.7 163.6-147.1 139.9 2.9 -4.3 -19.6 53 51 P F S > S+ 0 0 14 -2,-0.4 4,-0.7 -39,-0.1 -22,-0.1 -0.094 72.1 80.3-131.9 23.2 4.3 -6.2 -22.6 54 52 P N H > S+ 0 0 72 2,-0.2 4,-1.9 3,-0.1 5,-0.4 0.840 92.6 37.4 -96.3 -77.9 1.1 -6.3 -24.5 55 53 P W H > S+ 0 0 99 1,-0.3 4,-1.2 2,-0.2 5,-0.1 0.836 122.8 55.8 -43.5 -27.0 0.5 -3.1 -26.3 56 54 P L H > S+ 0 0 3 2,-0.3 4,-2.9 1,-0.2 5,-0.5 0.953 94.0 59.0 -70.6 -53.7 4.1 -3.6 -26.5 57 55 P S H <>S+ 0 0 69 -4,-0.7 5,-0.6 1,-0.3 -1,-0.2 0.787 119.8 34.8 -47.7 -22.1 3.9 -7.0 -28.1 58 56 P S H <5S+ 0 0 72 -4,-1.9 -1,-0.3 3,-0.1 -2,-0.3 0.620 114.7 56.3-106.1 -20.5 2.0 -4.9 -30.7 59 57 P Q H <5S+ 0 0 103 -4,-1.2 -3,-0.2 -3,-0.4 -2,-0.2 0.886 113.7 36.9 -80.4 -39.4 4.0 -1.7 -30.4 60 58 P R T <5S- 0 0 98 -4,-2.9 -3,-0.1 -5,-0.1 -2,-0.1 0.978 134.5 -13.7 -77.7 -70.1 7.3 -3.2 -31.2 61 59 P S T 5S+ 0 0 70 -5,-0.5 -3,-0.1 -4,-0.2 -4,-0.1 0.670 100.5 94.1-114.9 -10.2 6.6 -5.7 -33.7 62 60 P K < + 0 0 62 -5,-0.6 2,-0.4 -6,-0.4 -4,-0.1 0.275 56.2 167.0 -69.3-158.6 4.0 -6.5 -34.1 63 61 P N - 0 0 59 -6,-0.1 2,-0.2 2,-0.0 -4,-0.0 -0.590 19.5-174.5 160.6 143.7 2.6 -5.4 -35.9 64 62 P S 0 0 39 -2,-0.4 0, 0.0 -6,-0.3 0, 0.0 -0.651 360.0 360.0-157.7 177.7 0.9 -4.9 -37.4 65 63 P S 0 0 100 -2,-0.2 -1,-0.1 0, 0.0 -2,-0.0 -0.679 360.0 360.0-100.7 360.0 -0.2 -4.3 -38.6