==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-SEP-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 15-MAY-12 4F6M . COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR KAISO; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR B.A.BUCK-KOEHNTOP,R.L.STANFIELD,D.C.EKIERT,M.A.MARTINEZ-YAMO . 116 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8747.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 57.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 17.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 8.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 25.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 482 A D 0 0 120 0, 0.0 15,-1.4 0, 0.0 16,-0.3 0.000 360.0 360.0 360.0 135.0 9.6 87.2 26.2 2 483 A H E -A 15 0A 54 13,-0.2 2,-0.3 14,-0.1 13,-0.2 -0.840 360.0-115.6-163.9 179.0 13.2 88.1 26.9 3 484 A Y E -A 14 0A 104 11,-1.7 11,-3.2 -2,-0.2 2,-0.3 -0.958 28.9-115.5-137.7 161.4 16.0 90.5 26.2 4 485 A E E -A 13 0A 107 -2,-0.3 2,-0.5 9,-0.2 9,-0.2 -0.720 17.2-165.0 -99.1 146.3 19.4 89.9 24.5 5 486 A L E -A 12 0A 78 7,-2.1 7,-0.8 -2,-0.3 2,-0.7 -0.935 6.7-164.2-131.5 104.5 22.8 90.2 26.0 6 487 A I E +A 11 0A 111 -2,-0.5 2,-0.4 5,-0.2 5,-0.2 -0.840 10.6 178.4 -97.5 117.0 25.7 90.4 23.6 7 488 A V E > -A 10 0A 58 3,-1.9 3,-1.8 -2,-0.7 -2,-0.1 -0.931 65.0 -34.2-118.3 142.4 29.1 89.8 25.1 8 489 A D T 3 S- 0 0 156 -2,-0.4 2,-0.7 1,-0.3 -1,-0.2 0.632 127.6 -36.3 -4.8 83.6 32.3 89.7 23.1 9 490 A G T 3 S+ 0 0 73 1,-0.1 -1,-0.3 -3,-0.1 2,-0.2 -0.262 116.2 104.6 89.4 -46.6 30.7 88.3 19.9 10 491 A R E < -A 7 0A 159 -3,-1.8 -3,-1.9 -2,-0.7 2,-0.4 -0.453 58.0-142.1 -80.7 141.7 28.2 85.8 21.5 11 492 A V E -A 6 0A 52 -5,-0.2 2,-0.3 -2,-0.2 -5,-0.2 -0.784 17.5-175.4 -98.8 138.6 24.4 86.3 21.8 12 493 A Y E -A 5 0A 50 -7,-0.8 -7,-2.1 -2,-0.4 2,-0.5 -0.961 17.6-142.3-127.0 151.1 22.5 85.2 24.9 13 494 A Y E -AB 4 22A 46 9,-2.3 9,-2.2 -2,-0.3 2,-0.5 -0.974 17.9-157.9-113.8 123.4 18.7 85.3 25.5 14 495 A I E -AB 3 21A 8 -11,-3.2 -11,-1.7 -2,-0.5 7,-0.2 -0.892 17.5-123.5-108.3 127.9 17.7 86.3 29.0 15 496 A C E > -A 2 0A 0 5,-2.2 4,-1.6 -2,-0.5 -13,-0.2 -0.480 14.9-142.8 -66.8 129.1 14.3 85.4 30.5 16 497 A I T 4 S+ 0 0 91 -15,-1.4 -1,-0.1 -2,-0.2 -14,-0.1 0.769 94.0 46.2 -64.8 -28.8 12.4 88.5 31.7 17 498 A V T 4 S+ 0 0 92 -16,-0.3 -1,-0.1 1,-0.1 -15,-0.1 0.966 131.5 9.1 -79.4 -57.6 10.9 86.8 34.8 18 499 A C T 4 S- 0 0 45 2,-0.1 -2,-0.2 0, 0.0 -1,-0.1 0.427 90.8-124.4-110.4 -3.1 13.8 84.9 36.5 19 500 A K < + 0 0 150 -4,-1.6 -3,-0.1 1,-0.2 -17,-0.0 0.541 51.2 155.6 68.7 12.1 16.9 86.1 34.5 20 501 A R - 0 0 151 -6,-0.1 -5,-2.2 1,-0.1 2,-0.4 -0.370 36.4-131.3 -64.3 147.5 18.2 82.6 33.4 21 502 A S E -B 14 0A 73 -7,-0.2 2,-0.4 -9,-0.0 -7,-0.2 -0.858 19.7-165.9-109.8 146.3 20.3 82.8 30.2 22 503 A Y E -B 13 0A 42 -9,-2.2 -9,-2.3 -2,-0.4 3,-0.0 -0.974 24.9-147.8-132.6 136.7 20.0 80.7 27.0 23 504 A V S S+ 0 0 109 -2,-0.4 2,-0.3 -11,-0.2 -12,-0.1 0.748 91.2 34.2 -73.0 -22.9 22.3 80.1 24.1 24 505 A C S > S- 0 0 53 -11,-0.1 4,-1.4 1,-0.1 3,-0.2 -0.983 73.2-131.0-134.6 149.5 19.2 79.7 21.9 25 506 A L H > S+ 0 0 53 -2,-0.3 4,-2.5 1,-0.2 5,-0.2 0.802 105.3 63.0 -62.7 -34.5 15.7 81.1 21.6 26 507 A T H > S+ 0 0 108 1,-0.2 4,-2.7 2,-0.2 -1,-0.2 0.942 103.7 48.7 -56.0 -49.0 14.1 77.7 21.4 27 508 A S H > S+ 0 0 24 2,-0.2 4,-2.9 1,-0.2 -1,-0.2 0.892 109.8 52.4 -56.3 -43.0 15.4 76.8 24.9 28 509 A L H X S+ 0 0 0 -4,-1.4 4,-2.3 2,-0.2 -2,-0.2 0.945 110.5 46.6 -62.0 -47.6 14.1 80.1 26.3 29 510 A R H X S+ 0 0 128 -4,-2.5 4,-1.1 2,-0.2 -2,-0.2 0.941 112.7 50.7 -55.4 -49.8 10.6 79.4 24.8 30 511 A R H >< S+ 0 0 134 -4,-2.7 3,-0.6 1,-0.2 4,-0.2 0.933 115.0 43.3 -55.0 -47.6 10.6 75.9 26.2 31 512 A H H >< S+ 0 0 19 -4,-2.9 3,-1.8 1,-0.2 4,-0.3 0.825 102.9 66.7 -64.6 -35.3 11.7 77.2 29.6 32 513 A F H >X S+ 0 0 40 -4,-2.3 3,-2.2 1,-0.3 4,-1.9 0.772 82.3 74.6 -66.2 -25.6 9.2 80.1 29.6 33 514 A N H S- 0 0 12 -11,-0.2 4,-1.5 1,-0.1 3,-0.3 -0.997 74.6-133.9-132.4 141.4 7.5 70.5 29.7 53 534 A A H > S+ 0 0 41 -2,-0.4 4,-2.4 1,-0.2 3,-0.2 0.913 106.9 54.8 -54.9 -45.9 6.6 67.6 27.4 54 535 A E H > S+ 0 0 107 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.869 104.1 55.1 -61.2 -34.9 9.8 65.7 28.2 55 536 A Y H > S+ 0 0 101 -3,-0.3 4,-2.2 2,-0.2 -1,-0.2 0.905 108.6 47.8 -64.7 -41.0 9.0 65.8 32.0 56 537 A R H X S+ 0 0 67 -4,-1.5 4,-2.9 -3,-0.2 -2,-0.2 0.925 109.9 53.1 -65.5 -43.8 5.6 64.2 31.3 57 538 A T H X S+ 0 0 39 -4,-2.4 4,-1.6 2,-0.2 -2,-0.2 0.930 110.0 46.5 -56.3 -46.9 7.2 61.5 29.1 58 539 A K H X S+ 0 0 108 -4,-2.2 4,-1.4 1,-0.2 -1,-0.2 0.921 113.0 51.2 -64.1 -40.1 9.7 60.5 31.8 59 540 A H H X S+ 0 0 36 -4,-2.2 4,-1.1 1,-0.2 3,-0.3 0.906 107.4 51.7 -61.2 -42.8 7.0 60.5 34.3 60 541 A E H X S+ 0 0 7 -4,-2.9 4,-1.4 1,-0.2 -1,-0.2 0.786 102.6 59.9 -69.5 -27.0 4.8 58.2 32.2 61 542 A I H X>S+ 0 0 12 -4,-1.6 4,-1.5 1,-0.2 5,-0.6 0.869 99.6 57.7 -65.1 -37.1 7.6 55.7 31.8 62 543 A H H <5S+ 0 0 139 -4,-1.4 -1,-0.2 -3,-0.3 -2,-0.2 0.897 104.0 53.4 -55.7 -41.1 7.6 55.4 35.6 63 544 A H H <5S+ 0 0 86 -4,-1.1 -2,-0.2 1,-0.2 -1,-0.2 0.908 111.6 41.9 -62.1 -45.1 4.0 54.3 35.4 64 545 A T H <5S- 0 0 51 -4,-1.4 -1,-0.2 2,-0.1 -2,-0.2 0.707 98.4-134.4 -77.6 -21.1 4.5 51.5 32.8 65 546 A G T <5 + 0 0 43 -4,-1.5 -3,-0.1 1,-0.2 2,-0.1 0.609 43.3 163.8 76.3 11.1 7.7 50.1 34.4 66 547 A E < - 0 0 22 -5,-0.6 2,-0.7 1,-0.1 -1,-0.2 -0.413 27.5-152.7 -62.4 131.4 9.5 49.9 31.0 67 548 A R + 0 0 164 1,-0.1 12,-0.2 -2,-0.1 13,-0.1 -0.854 23.5 166.3-108.4 97.8 13.3 49.5 31.4 68 549 A R + 0 0 43 -2,-0.7 38,-3.0 11,-0.3 2,-0.6 0.703 50.0 81.3 -86.0 -21.1 14.9 50.9 28.3 69 550 A Y E -DE 78 105C 26 9,-2.3 9,-2.1 36,-0.2 2,-0.5 -0.773 59.3-171.0 -95.6 116.9 18.6 51.2 29.4 70 551 A Q E -DE 77 104C 32 34,-3.1 34,-2.1 -2,-0.6 2,-0.4 -0.935 21.2-134.9-114.6 125.5 20.6 48.0 29.2 71 552 A C E > - E 0 103C 0 5,-2.6 4,-2.1 -2,-0.5 32,-0.2 -0.579 13.5-156.6 -67.6 123.1 24.2 47.4 30.6 72 553 A L T 4 S+ 0 0 83 30,-2.4 -1,-0.1 -2,-0.4 31,-0.1 0.647 85.6 64.1 -79.7 -16.5 26.1 45.6 27.8 73 554 A A T 4 S+ 0 0 65 29,-0.5 -1,-0.2 1,-0.1 30,-0.1 0.914 127.3 2.6 -73.3 -39.3 28.6 44.1 30.2 74 555 A C T 4 S- 0 0 62 2,-0.1 -2,-0.2 -3,-0.1 -1,-0.1 0.481 94.1-113.5-130.6 -7.2 26.0 42.0 32.2 75 556 A G < + 0 0 33 -4,-2.1 2,-0.1 1,-0.3 -3,-0.1 0.262 61.0 145.1 96.9 -13.7 22.5 42.4 30.6 76 557 A K - 0 0 127 -6,-0.1 -5,-2.6 1,-0.1 -1,-0.3 -0.390 37.2-143.9 -64.7 134.0 20.8 44.2 33.4 77 558 A S E -D 70 0C 46 -7,-0.2 2,-0.3 -2,-0.1 -7,-0.2 -0.625 14.3-167.9-101.6 159.6 18.2 46.8 32.4 78 559 A F E -D 69 0C 33 -9,-2.1 -9,-2.3 -2,-0.2 -10,-0.1 -0.968 28.7-123.8-147.8 152.1 17.4 50.1 34.1 79 560 A I S S+ 0 0 48 -2,-0.3 -11,-0.3 -12,-0.2 2,-0.3 0.767 86.8 4.8 -76.4 -24.7 14.6 52.7 33.9 80 561 A N S > S- 0 0 31 -11,-0.1 4,-1.9 1,-0.1 3,-0.2 -0.919 79.0 -93.0-151.8 176.1 16.8 55.7 33.2 81 562 A Y H > S+ 0 0 73 -2,-0.3 4,-3.4 1,-0.2 5,-0.3 0.910 116.0 60.1 -62.3 -42.9 20.4 57.0 32.5 82 563 A Q H > S+ 0 0 125 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.876 109.8 40.2 -56.8 -44.0 21.1 57.7 36.1 83 564 A F H > S+ 0 0 114 -3,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.859 115.2 51.6 -72.5 -40.5 20.6 54.1 37.3 84 565 A M H X S+ 0 0 0 -4,-1.9 4,-2.3 2,-0.2 -2,-0.2 0.962 114.8 43.5 -56.5 -51.6 22.3 52.7 34.2 85 566 A S H X S+ 0 0 14 -4,-3.4 4,-2.3 1,-0.2 -2,-0.2 0.867 112.5 50.8 -65.9 -39.1 25.4 55.0 34.8 86 567 A S H X S+ 0 0 78 -4,-2.0 4,-2.1 -5,-0.3 5,-0.3 0.911 111.3 49.7 -69.2 -38.6 25.5 54.4 38.6 87 568 A H H X>S+ 0 0 19 -4,-2.0 4,-2.9 2,-0.2 5,-0.7 0.940 111.2 47.6 -59.8 -51.2 25.4 50.6 38.0 88 569 A I H X5S+ 0 0 3 -4,-2.3 4,-1.6 1,-0.2 6,-1.0 0.941 114.0 47.2 -61.4 -47.1 28.2 50.6 35.4 89 570 A K H X5S+ 0 0 109 -4,-2.3 4,-0.5 4,-0.2 -1,-0.2 0.893 121.2 35.0 -60.1 -43.0 30.5 52.9 37.6 90 571 A S H <5S+ 0 0 88 -4,-2.1 -2,-0.2 -5,-0.2 -1,-0.2 0.878 129.6 30.5 -83.7 -37.7 30.1 50.9 40.8 91 572 A V H <5S+ 0 0 86 -4,-2.9 -3,-0.2 -5,-0.3 -2,-0.2 0.887 135.0 24.1 -88.3 -42.2 29.8 47.4 39.5 92 573 A H H <