==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-SEP-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 15-MAY-12 4F6N . COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR KAISO; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR B.A.BUCK-KOEHNTOP,R.L.STANFIELD,D.C.EKIERT,M.A.MARTINEZ-YAMO . 120 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8995.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 73 60.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 16.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 10.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 25.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 3 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 481 A D 0 0 160 0, 0.0 2,-0.3 0, 0.0 29,-0.0 0.000 360.0 360.0 360.0 77.2 -5.7 -6.1 29.0 2 482 A D + 0 0 97 2,-0.0 15,-0.5 0, 0.0 2,-0.3 -0.944 360.0 133.5-165.8 152.9 -8.7 -4.2 27.5 3 483 A H E -A 16 0A 41 -2,-0.3 2,-0.3 13,-0.2 13,-0.2 -0.891 38.6-120.1-172.7 177.9 -12.4 -4.5 26.6 4 484 A Y E -A 15 0A 99 11,-2.6 11,-3.6 -2,-0.3 2,-0.1 -0.998 17.2-123.1-142.3 151.2 -15.5 -2.3 27.2 5 485 A E E -A 14 0A 117 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.471 17.5-169.9 -93.4 160.5 -18.8 -2.7 29.0 6 486 A L E -A 13 0A 72 7,-1.9 7,-2.8 -2,-0.1 2,-0.5 -0.956 5.9-159.1-153.8 123.5 -22.4 -2.3 27.7 7 487 A I E +A 12 0A 114 -2,-0.3 2,-0.5 5,-0.2 5,-0.2 -0.924 10.7 177.5-120.4 115.1 -25.6 -2.2 29.7 8 488 A V E > S-A 11 0A 75 3,-2.1 3,-1.0 -2,-0.5 -2,-0.0 -0.959 73.6 -39.1-116.8 117.1 -29.1 -2.9 28.3 9 489 A D T 3 S- 0 0 145 -2,-0.5 2,-1.3 1,-0.3 -1,-0.2 0.868 125.0 -36.9 25.4 74.0 -32.0 -2.9 30.9 10 490 A G T 3 S+ 0 0 61 1,-0.2 -1,-0.3 -3,-0.1 0, 0.0 -0.472 113.3 110.3 91.4 -63.4 -30.0 -4.7 33.7 11 491 A R E < -A 8 0A 130 -2,-1.3 -3,-2.1 -3,-1.0 2,-0.4 -0.202 56.7-149.4 -52.4 126.1 -28.0 -7.1 31.6 12 492 A V E -A 7 0A 51 -5,-0.2 2,-0.3 12,-0.1 -5,-0.2 -0.841 13.8-169.4 -96.1 134.5 -24.2 -6.3 31.5 13 493 A Y E -A 6 0A 64 -7,-2.8 -7,-1.9 -2,-0.4 2,-0.5 -0.944 14.1-142.7-122.6 148.8 -22.3 -7.2 28.3 14 494 A Y E -AB 5 23A 48 9,-2.8 9,-1.3 -2,-0.3 2,-0.4 -0.955 16.4-158.2-113.0 123.7 -18.5 -7.2 27.8 15 495 A I E -AB 4 22A 7 -11,-3.6 -11,-2.6 -2,-0.5 2,-0.3 -0.868 18.9-120.9-107.9 134.9 -17.3 -6.1 24.3 16 496 A C E > -A 3 0A 0 5,-1.8 4,-1.6 -2,-0.4 -13,-0.2 -0.556 14.4-141.4 -73.0 125.8 -13.9 -7.0 22.9 17 497 A I T 4 S+ 0 0 78 -15,-0.5 -1,-0.1 -2,-0.3 -14,-0.1 0.768 96.3 42.9 -59.5 -26.6 -11.8 -3.9 22.0 18 498 A V T 4 S+ 0 0 86 -16,-0.2 -1,-0.2 3,-0.1 -15,-0.0 0.966 133.3 7.7 -84.9 -62.9 -10.5 -5.5 18.8 19 499 A C T 4 S- 0 0 55 2,-0.1 -2,-0.1 0, 0.0 -1,-0.1 0.486 89.4-130.2-107.5 -7.3 -13.3 -7.3 17.0 20 500 A K < + 0 0 138 -4,-1.6 2,-0.1 1,-0.2 -3,-0.1 0.675 45.9 157.6 67.6 24.7 -16.3 -6.1 19.1 21 501 A R - 0 0 159 1,-0.1 -5,-1.8 8,-0.0 2,-0.3 -0.459 38.8-121.7 -69.0 152.4 -18.0 -9.5 19.8 22 502 A S E -B 15 0A 71 -7,-0.2 2,-0.4 -2,-0.1 -7,-0.2 -0.724 25.8-169.7-102.4 151.2 -20.2 -9.5 22.9 23 503 A Y E -B 14 0A 41 -9,-1.3 -9,-2.8 -2,-0.3 3,-0.1 -0.999 24.7-155.2-143.5 135.1 -19.9 -11.7 26.0 24 504 A V S S+ 0 0 109 -2,-0.4 2,-0.4 -11,-0.2 -12,-0.1 0.664 89.6 48.3 -77.4 -18.1 -22.2 -12.3 29.0 25 505 A C >> - 0 0 66 1,-0.1 4,-1.5 -11,-0.1 3,-1.0 -0.983 69.5-146.1-134.0 124.4 -19.2 -13.4 31.1 26 506 A L H 3> S+ 0 0 56 -2,-0.4 4,-2.6 1,-0.3 3,-0.3 0.886 103.1 63.6 -54.0 -41.4 -15.8 -11.6 31.5 27 507 A T H 3> S+ 0 0 108 1,-0.2 4,-2.3 2,-0.2 -1,-0.3 0.885 102.0 48.6 -41.6 -50.7 -14.3 -15.1 31.7 28 508 A S H <> S+ 0 0 29 -3,-1.0 4,-2.3 2,-0.2 -1,-0.2 0.844 109.7 52.0 -69.1 -33.5 -15.4 -15.9 28.2 29 509 A L H X S+ 0 0 0 -4,-1.5 4,-4.0 -3,-0.3 5,-0.2 0.964 109.3 48.4 -64.7 -53.5 -14.0 -12.6 26.9 30 510 A R H X S+ 0 0 104 -4,-2.6 4,-0.9 1,-0.2 -2,-0.2 0.928 112.2 50.6 -49.2 -49.0 -10.6 -13.2 28.4 31 511 A R H < S+ 0 0 128 -4,-2.3 3,-0.5 -5,-0.2 4,-0.3 0.910 117.7 38.9 -58.9 -45.5 -10.6 -16.7 26.9 32 512 A H H >< S+ 0 0 24 -4,-2.3 3,-2.1 1,-0.2 4,-0.4 0.892 101.1 71.9 -68.7 -42.8 -11.5 -15.3 23.5 33 513 A F H >X S+ 0 0 29 -4,-4.0 4,-2.6 1,-0.3 3,-1.3 0.729 83.9 72.6 -53.8 -21.7 -9.2 -12.2 23.7 34 514 A N H 3X S+ 0 0 16 -4,-0.9 4,-2.0 -3,-0.5 -1,-0.3 0.873 77.5 73.5 -62.5 -38.5 -6.2 -14.5 23.3 35 515 A I H <4 S+ 0 0 69 -3,-2.1 -1,-0.3 -4,-0.3 -2,-0.2 0.831 115.0 27.2 -39.2 -37.5 -7.0 -15.1 19.6 36 516 A H H <4 S+ 0 0 65 -3,-1.3 -2,-0.2 -4,-0.4 -1,-0.2 0.877 126.6 45.5 -89.4 -51.5 -5.7 -11.5 19.3 37 517 A S H < - 0 0 52 -4,-2.6 -3,-0.2 1,-0.1 -2,-0.2 0.932 69.2-166.2 -60.2 -55.4 -3.3 -11.3 22.3 38 518 A W < + 0 0 106 -4,-2.0 -4,-0.1 14,-0.1 -3,-0.1 0.705 41.7 138.2 59.8 24.3 -1.3 -14.6 22.1 39 519 A E + 0 0 156 -5,-0.1 2,-0.3 13,-0.1 -5,-0.0 0.877 67.3 44.6 -62.8 -38.4 -0.2 -13.8 25.6 40 520 A K S S- 0 0 124 12,-0.2 2,-0.4 2,-0.0 -2,-0.1 -0.854 76.1-156.6-106.5 146.4 -0.7 -17.4 26.4 41 521 A K - 0 0 127 -2,-0.3 13,-0.0 2,-0.0 9,-0.0 -0.945 8.6-166.0-118.9 142.1 0.4 -20.4 24.3 42 522 A Y E -C 51 0B 54 9,-1.8 9,-2.6 -2,-0.4 2,-0.2 -0.779 17.7-169.3-126.6 84.9 -1.0 -23.9 24.2 43 523 A P E -C 50 0B 62 0, 0.0 7,-0.2 0, 0.0 2,-0.2 -0.506 27.4-111.2 -74.2 142.6 1.5 -26.1 22.3 44 524 A C - 0 0 11 5,-2.6 5,-0.3 3,-0.3 14,-0.0 -0.537 16.3-144.4 -67.3 135.4 0.5 -29.6 21.3 45 525 A R S S+ 0 0 144 -2,-0.2 -1,-0.1 1,-0.2 3,-0.1 0.392 97.9 45.8 -83.2 5.1 2.5 -32.2 23.2 46 526 A Y S S+ 0 0 118 1,-0.3 2,-0.3 3,-0.1 -1,-0.2 0.616 120.8 18.7-120.8 -25.2 2.6 -34.4 20.1 47 527 A C S S- 0 0 45 2,-0.2 2,-1.8 0, 0.0 -1,-0.3 -0.947 85.7-100.1-138.3 163.2 3.5 -32.1 17.3 48 528 A E S S+ 0 0 207 -2,-0.3 2,-0.3 -5,-0.1 -3,-0.1 -0.608 79.5 122.5 -82.6 82.9 5.0 -28.6 17.1 49 529 A K - 0 0 112 -2,-1.8 -5,-2.6 -5,-0.3 2,-0.3 -0.963 48.0-148.2-155.0 122.2 1.7 -26.9 16.6 50 530 A V E -C 43 0B 73 -2,-0.3 -2,-0.0 -7,-0.2 -9,-0.0 -0.760 6.0-159.8-113.5 141.9 0.3 -24.2 18.9 51 531 A F E -C 42 0B 33 -9,-2.6 -9,-1.8 -2,-0.3 3,-0.1 -0.856 18.4-146.3-119.4 149.9 -3.2 -23.2 20.0 52 532 A P S S+ 0 0 18 0, 0.0 2,-0.4 0, 0.0 -12,-0.2 0.592 87.6 50.1 -87.7 -11.6 -4.6 -20.0 21.4 53 533 A L S >> S- 0 0 11 -11,-0.2 4,-1.7 1,-0.1 3,-0.8 -0.996 75.6-135.7-131.4 129.9 -7.2 -21.8 23.6 54 534 A A H >> S+ 0 0 46 -2,-0.4 4,-2.2 1,-0.3 3,-0.5 0.919 107.8 50.0 -44.0 -54.3 -6.7 -24.7 26.0 55 535 A E H 3> S+ 0 0 101 1,-0.3 4,-2.0 2,-0.2 -1,-0.3 0.780 103.7 59.0 -63.1 -29.3 -9.8 -26.5 24.8 56 536 A Y H <> S+ 0 0 101 -3,-0.8 4,-1.5 1,-0.2 -1,-0.3 0.918 109.6 44.7 -64.5 -41.7 -8.7 -26.1 21.1 57 537 A R H S+ 0 0 17 -4,-2.7 4,-2.1 1,-0.2 5,-0.5 0.841 105.7 60.6 -61.1 -31.6 -7.4 -36.5 22.0 63 543 A H H <5S+ 0 0 131 -4,-1.4 -2,-0.2 -5,-0.3 -1,-0.2 0.923 102.9 47.3 -61.9 -46.4 -7.4 -36.7 18.2 64 544 A H H <5S+ 0 0 88 -4,-1.3 -1,-0.2 1,-0.2 -2,-0.2 0.851 113.9 51.2 -54.1 -39.1 -3.7 -37.8 18.2 65 545 A T H <5S- 0 0 47 -4,-1.5 -2,-0.2 2,-0.1 -1,-0.2 0.798 92.9-144.1 -78.6 -34.4 -4.5 -40.3 20.9 66 546 A G T <5 + 0 0 42 -4,-2.1 -3,-0.1 1,-0.3 -4,-0.1 0.479 40.0 157.9 81.5 2.3 -7.5 -42.0 19.2 67 547 A E < - 0 0 19 -5,-0.5 2,-0.6 1,-0.1 -1,-0.3 -0.336 33.9-148.5 -59.0 139.1 -9.3 -42.5 22.5 68 548 A R + 0 0 159 1,-0.1 12,-0.3 13,-0.0 11,-0.1 -0.821 27.5 164.0-115.0 90.1 -13.1 -42.9 22.1 69 549 A R + 0 0 24 -2,-0.6 38,-3.0 11,-0.3 2,-0.6 0.671 52.1 79.6 -84.0 -19.4 -14.7 -41.4 25.2 70 550 A Y E -DE 79 106C 41 9,-2.2 9,-2.4 36,-0.2 2,-0.5 -0.811 60.5-172.9 -97.2 121.1 -18.3 -41.1 23.9 71 551 A Q E -DE 78 105C 35 34,-3.0 34,-2.4 -2,-0.6 2,-0.3 -0.957 22.8-134.4-119.5 125.3 -20.3 -44.3 24.0 72 552 A C E > - E 0 104C 0 5,-2.4 4,-1.9 -2,-0.5 32,-0.2 -0.574 13.8-156.2 -66.3 126.1 -23.8 -44.8 22.6 73 553 A L T 4 S+ 0 0 90 30,-3.1 31,-0.2 -2,-0.3 -1,-0.1 0.689 85.1 65.8 -82.0 -18.9 -25.7 -46.7 25.2 74 554 A A T 4 S+ 0 0 63 29,-0.6 -1,-0.2 1,-0.1 30,-0.1 0.853 127.3 1.8 -68.8 -36.1 -28.2 -48.1 22.7 75 555 A C T 4 S- 0 0 67 2,-0.2 -2,-0.2 -3,-0.2 -1,-0.1 0.500 92.4-115.9-135.4 -5.4 -25.6 -50.3 21.0 76 556 A G < + 0 0 33 -4,-1.9 -3,-0.1 1,-0.3 28,-0.0 0.222 60.9 147.5 92.4 -14.5 -22.2 -49.8 22.7 77 557 A K - 0 0 131 -6,-0.1 -5,-2.4 1,-0.1 -1,-0.3 -0.270 37.4-141.5 -56.7 135.0 -20.5 -48.3 19.7 78 558 A S E -D 71 0C 41 -7,-0.2 2,-0.3 2,-0.0 -7,-0.2 -0.697 16.1-167.7-109.8 162.3 -17.9 -45.7 20.7 79 559 A F E -D 70 0C 35 -9,-2.4 -9,-2.2 -2,-0.2 3,-0.0 -0.953 30.6-126.0-148.4 153.3 -16.8 -42.3 19.3 80 560 A I S S+ 0 0 40 -2,-0.3 2,-0.3 -12,-0.3 -11,-0.3 0.673 88.1 2.5 -79.8 -17.8 -14.0 -39.7 19.6 81 561 A N S > S- 0 0 45 -11,-0.1 4,-1.8 1,-0.1 5,-0.2 -0.959 75.9 -93.1-159.7 174.9 -16.4 -36.8 20.4 82 562 A Y H > S+ 0 0 87 -2,-0.3 4,-3.0 1,-0.2 5,-0.2 0.911 114.9 58.5 -61.9 -44.5 -19.9 -35.4 21.0 83 563 A Q H > S+ 0 0 126 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.890 110.3 39.3 -55.9 -47.7 -20.5 -34.5 17.4 84 564 A F H > S+ 0 0 95 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.860 115.3 53.8 -75.3 -35.6 -20.0 -38.0 15.9 85 565 A M H X S+ 0 0 0 -4,-1.8 4,-2.4 2,-0.2 -2,-0.2 0.902 111.0 46.6 -56.9 -47.9 -21.8 -39.6 18.9 86 566 A S H X S+ 0 0 13 -4,-3.0 4,-2.5 2,-0.2 5,-0.2 0.889 110.1 51.6 -68.1 -41.1 -24.8 -37.3 18.2 87 567 A S H X S+ 0 0 67 -4,-2.0 4,-2.3 -5,-0.2 5,-0.3 0.874 112.3 49.2 -60.1 -38.7 -24.9 -37.9 14.5 88 568 A H H X>S+ 0 0 20 -4,-1.8 4,-3.4 2,-0.2 5,-0.7 0.986 112.2 44.0 -64.9 -60.7 -24.9 -41.6 15.2 89 569 A I H X5S+ 0 0 2 -4,-2.4 4,-1.4 1,-0.2 6,-1.2 0.888 117.7 47.0 -54.0 -43.1 -27.7 -41.7 17.7 90 570 A K H X5S+ 0 0 106 -4,-2.5 4,-0.7 4,-0.2 -1,-0.2 0.935 120.4 34.9 -66.3 -47.7 -29.8 -39.3 15.6 91 571 A S H <5S+ 0 0 97 -4,-2.3 -2,-0.2 -5,-0.2 -1,-0.2 0.818 130.3 30.6 -81.9 -30.8 -29.4 -41.1 12.3 92 572 A V H <5S+ 0 0 85 -4,-3.4 -3,-0.2 -5,-0.3 -2,-0.2 0.840 134.8 25.5 -94.9 -38.9 -29.3 -44.7 13.5 93 573 A H H < - 0 0 107 -2,-0.5 3,-1.5 1,-0.1 -2,-0.0 -0.554 5.9-142.1 -80.7 124.2 -14.6 -34.4 36.5 118 598 A A T 3 S+ 0 0 116 -2,-0.4 -1,-0.1 1,-0.3 -2,-0.0 0.494 103.1 50.9 -58.0 -7.9 -15.9 -36.1 39.7 119 599 A Y T 3 0 0 183 0, 0.0 -1,-0.3 0, 0.0 -2,-0.0 0.673 360.0 360.0-100.7 -25.2 -19.3 -36.6 38.0 120 600 A L < 0 0 58 -3,-1.5 -13,-0.1 -13,-0.1 -15,-0.0 -0.241 360.0 360.0 -59.1 360.0 -18.0 -38.2 34.8