==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-DEC-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOME 28-JUN-00 1F7Y . COMPND 2 MOLECULE: 16S RIBOSOMAL RNA FRAGMENT; . SOURCE 2 SYNTHETIC: YES; . AUTHOR E.ENNIFAR,A.NIKOULINE,A.SERGANOV,S.TISHCHENKO,N.NEVSKAYA,M.G . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6414.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 72 83.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 18.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 49 57.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A P 0 0 152 0, 0.0 2,-2.1 0, 0.0 36,-0.0 0.000 360.0 360.0 360.0 -49.9 17.0 58.4 19.2 2 2 A I - 0 0 26 4,-0.1 3,-0.1 3,-0.1 32,-0.0 -0.453 360.0-160.1 75.7 -71.2 17.0 56.3 16.0 3 3 A T >> - 0 0 82 -2,-2.1 4,-3.3 1,-0.1 3,-0.9 0.153 37.9 -71.7 76.4 163.8 15.6 59.1 13.7 4 4 A K H 3>>S+ 0 0 150 1,-0.3 4,-1.5 2,-0.2 5,-1.3 0.861 126.9 70.0 -57.9 -39.9 14.0 58.6 10.3 5 5 A E H 345S+ 0 0 144 3,-0.2 -1,-0.3 1,-0.2 -2,-0.1 0.228 121.2 20.4 -66.6 21.7 17.3 57.8 8.6 6 6 A E H <>5S+ 0 0 66 -3,-0.9 4,-2.5 3,-0.0 -2,-0.2 0.240 126.5 45.2-148.2 -67.9 16.8 54.6 10.7 7 7 A K H X5S+ 0 0 96 -4,-3.3 4,-1.6 1,-0.2 -3,-0.2 0.870 120.9 42.1 -57.9 -38.9 13.1 54.2 11.7 8 8 A Q H X5S+ 0 0 96 -4,-1.5 4,-3.1 -5,-0.3 -1,-0.2 0.867 110.4 59.4 -75.7 -33.8 11.9 55.0 8.2 9 9 A K H 4X S+ 0 0 20 -4,-2.5 4,-2.4 2,-0.2 3,-1.7 0.960 113.9 49.4 -67.3 -48.6 13.6 49.8 8.5 11 11 A X H 3X S+ 0 0 37 -4,-1.6 4,-2.9 1,-0.3 -2,-0.2 0.928 106.6 54.7 -54.7 -49.7 9.9 50.4 7.6 12 12 A Q H 3< S+ 0 0 143 -4,-3.1 -1,-0.3 1,-0.2 -2,-0.2 0.631 113.5 46.5 -61.8 -8.7 10.8 50.9 3.9 13 13 A E H <4 S+ 0 0 108 -3,-1.7 -2,-0.2 -4,-0.3 -1,-0.2 0.820 120.4 31.8-100.0 -41.1 12.5 47.5 4.2 14 14 A F H < S+ 0 0 21 -4,-2.4 12,-0.3 6,-0.1 -2,-0.2 0.571 87.7 121.7 -94.8 -9.0 9.8 45.5 6.0 15 15 A A < - 0 0 30 -4,-2.9 6,-0.1 -5,-0.3 -3,-0.0 -0.203 58.0-145.3 -54.7 142.3 6.8 47.2 4.5 16 16 A R S S+ 0 0 135 1,-0.3 -1,-0.2 2,-0.0 -4,-0.0 0.522 82.8 0.1 -86.0 -7.4 4.4 44.9 2.6 17 17 A F S > S- 0 0 116 3,-0.0 3,-3.2 0, 0.0 2,-1.4 -0.912 99.9 -67.1-175.0 153.1 3.7 47.8 0.2 18 18 A P T 3 S+ 0 0 139 0, 0.0 3,-0.1 0, 0.0 -6,-0.1 -0.235 126.5 23.9 -51.8 80.9 4.6 51.5 -0.4 19 19 A G T 3 S+ 0 0 58 -2,-1.4 2,-0.2 1,-0.3 -7,-0.1 0.201 82.1 140.1 143.2 -9.9 3.1 53.1 2.6 20 20 A D < + 0 0 14 -3,-3.2 -1,-0.3 1,-0.2 -5,-0.1 -0.444 8.3 150.8 -63.1 128.1 3.0 50.2 5.0 21 21 A T S S+ 0 0 98 -2,-0.2 -1,-0.2 -3,-0.1 -10,-0.1 0.315 70.0 32.7-140.6 -0.0 3.9 51.5 8.5 22 22 A G + 0 0 44 -11,-0.1 2,-0.5 4,-0.0 -2,-0.1 0.118 69.1 130.7-152.2 35.7 2.0 49.2 10.9 23 23 A S S S- 0 0 10 1,-0.1 2,-3.4 4,-0.0 3,-0.1 -0.148 75.2-107.0 -86.9 37.0 1.8 45.7 9.4 24 24 A T S > S+ 0 0 20 -2,-0.5 4,-2.5 1,-0.2 5,-0.2 -0.237 120.5 60.1 71.3 -59.3 2.9 43.4 12.2 25 25 A E H >> S+ 0 0 15 -2,-3.4 4,-3.5 2,-0.2 3,-0.6 0.999 110.2 39.0 -61.8 -63.0 6.1 42.8 10.3 26 26 A V H 3> S+ 0 0 0 -12,-0.3 4,-1.9 1,-0.3 5,-0.4 0.914 116.5 54.0 -49.4 -45.7 7.1 46.5 10.4 27 27 A Q H 34 S+ 0 0 76 1,-0.2 -1,-0.3 2,-0.2 -2,-0.2 0.867 114.1 40.3 -57.9 -40.3 5.7 46.6 13.9 28 28 A V H X S+ 0 0 5 -4,-3.5 3,-1.4 1,-0.3 4,-1.3 0.969 113.1 38.6 -49.6 -72.7 11.0 44.8 13.0 30 30 A L H 3X S+ 0 0 43 -4,-1.9 4,-1.2 1,-0.3 -1,-0.3 0.701 113.4 60.7 -57.5 -12.4 11.3 48.3 14.4 31 31 A L H 3> S+ 0 0 18 -5,-0.4 4,-0.7 -3,-0.3 -1,-0.3 0.881 106.3 44.6 -78.7 -36.3 10.3 46.7 17.7 32 32 A T H X S+ 0 0 80 -4,-1.0 4,-2.8 2,-0.2 3,-1.2 0.955 110.9 62.7 -75.7 -55.5 18.8 46.1 20.6 37 37 A R H 3< S+ 0 0 105 -4,-1.9 4,-0.3 1,-0.3 -1,-0.2 0.678 116.1 35.0 -42.4 -20.7 19.3 49.9 20.6 38 38 A L H 3> S+ 0 0 29 -4,-0.4 4,-2.3 2,-0.2 -1,-0.3 0.586 106.3 64.6-110.9 -21.5 18.5 49.5 24.4 39 39 A S H X S+ 0 0 131 -4,-2.8 4,-1.2 1,-0.2 3,-0.5 0.877 109.3 54.7 -57.9 -41.6 23.3 48.0 24.2 41 41 A H H >> S+ 0 0 59 -5,-0.4 4,-1.9 -4,-0.3 3,-0.5 0.984 100.3 56.9 -55.1 -65.3 22.4 50.9 26.4 42 42 A L H 3< S+ 0 0 27 -4,-2.3 -1,-0.2 1,-0.2 6,-0.2 0.720 101.6 61.5 -39.2 -30.9 21.8 48.8 29.6 43 43 A K H X< S+ 0 0 135 -4,-1.0 3,-0.5 -3,-0.5 -1,-0.2 0.991 105.2 41.8 -63.1 -62.9 25.4 47.6 29.1 44 44 A V H << S+ 0 0 118 -4,-1.2 2,-0.6 -3,-0.5 -2,-0.2 0.850 125.4 41.0 -52.0 -36.9 27.1 51.0 29.5 45 45 A H T >< + 0 0 83 -4,-1.9 3,-1.3 1,-0.1 4,-0.3 -0.722 64.5 162.7-116.7 79.9 24.7 51.7 32.3 46 46 A K T < S+ 0 0 158 -2,-0.6 -1,-0.1 -3,-0.5 -2,-0.1 0.545 75.3 61.5 -74.2 -5.6 24.4 48.5 34.3 47 47 A K T 3 S+ 0 0 191 1,-0.1 3,-0.3 -3,-0.1 -1,-0.2 0.506 78.4 89.5 -97.3 -4.9 22.9 50.5 37.2 48 48 A D < + 0 0 53 -3,-1.3 2,-3.4 -6,-0.2 -2,-0.1 0.949 43.0 153.5 -56.3 -57.5 19.9 51.8 35.2 49 49 A H >> + 0 0 117 -4,-0.3 3,-2.4 1,-0.2 4,-0.8 -0.283 61.4 72.3 61.4 -69.2 17.5 48.9 36.1 50 50 A H H >> S+ 0 0 117 -2,-3.4 3,-1.1 1,-0.3 4,-0.5 0.843 95.8 51.5 -42.7 -44.7 14.4 51.1 35.6 51 51 A S H 3> S+ 0 0 44 1,-0.3 4,-1.3 2,-0.2 3,-0.5 0.740 96.5 68.9 -67.8 -22.3 15.0 51.1 31.8 52 52 A H H <> S+ 0 0 85 -3,-2.4 4,-2.1 1,-0.2 -1,-0.3 0.808 84.5 72.5 -65.5 -26.5 15.2 47.3 32.0 53 53 A R H X S+ 0 0 105 -4,-1.6 4,-1.9 1,-0.2 3,-0.9 0.958 111.4 44.8 -61.3 -52.2 -0.1 36.1 16.4 69 69 A L H 3X S+ 0 0 1 -4,-2.9 4,-0.9 1,-0.2 8,-0.3 0.586 106.2 63.9 -68.9 -10.2 1.4 36.1 12.9 70 70 A Q H 3< S+ 0 0 87 -4,-0.9 -1,-0.2 -3,-0.4 -2,-0.2 0.765 108.2 39.2 -83.9 -27.4 2.5 32.5 13.4 71 71 A R H << S+ 0 0 134 -4,-1.0 -2,-0.2 -3,-0.9 -3,-0.1 0.919 122.1 39.2 -85.2 -53.2 -1.2 31.3 13.6 72 72 A E H < S+ 0 0 120 -4,-1.9 -3,-0.2 1,-0.2 -2,-0.1 0.789 134.2 13.5 -71.1 -30.1 -2.7 33.5 10.9 73 73 A D X + 0 0 32 -4,-0.9 4,-1.3 -5,-0.3 3,-0.2 -0.390 59.3 173.6-151.1 71.5 0.1 33.4 8.4 74 74 A P H >> S+ 0 0 65 0, 0.0 4,-1.7 0, 0.0 3,-1.0 0.869 81.7 58.2 -41.9 -54.4 2.9 30.7 8.9 75 75 A E H >> S+ 0 0 122 1,-0.3 4,-1.9 2,-0.2 3,-0.7 0.937 108.6 44.7 -42.6 -62.8 4.6 31.5 5.6 76 76 A R H 3> S+ 0 0 60 -3,-0.2 4,-2.8 1,-0.2 -1,-0.3 0.723 106.1 64.7 -56.6 -24.2 5.2 35.2 6.6 77 77 A Y H < S+ 0 0 125 -4,-1.9 3,-1.6 -5,-0.3 -2,-0.2 0.975 114.2 38.7 -50.3 -63.4 10.1 35.0 6.5 80 80 A L H 3< S+ 0 0 8 -4,-2.8 5,-0.3 1,-0.3 -2,-0.2 0.891 105.0 64.6 -56.6 -47.3 10.0 37.7 9.2 81 81 A I T 3X>S+ 0 0 33 -4,-3.0 4,-0.7 -5,-0.2 5,-0.6 0.535 101.6 67.8 -58.1 -1.6 11.8 35.6 11.9 82 82 A E T <45S+ 0 0 119 -3,-1.6 -3,-0.0 -4,-0.4 0, 0.0 -0.456 83.3 47.5-104.0-178.6 14.6 35.9 9.4 83 83 A K T 45S+ 0 0 112 1,-0.2 -1,-0.2 -2,-0.2 -2,-0.1 0.607 133.8 30.2 59.7 4.3 16.5 39.1 8.6 84 84 A L T 45S- 0 0 75 -3,-0.2 -1,-0.2 2,-0.0 -2,-0.2 0.285 103.3-139.3-155.1 -44.6 16.4 39.3 12.4 85 85 A G T <5 0 0 53 -4,-0.7 -3,-0.2 -5,-0.3 -4,-0.1 0.688 360.0 360.0 75.3 122.8 16.5 35.7 13.7 86 86 A I < 0 0 110 -5,-0.6 -2,-0.0 0, 0.0 -5,-0.0 -0.603 360.0 360.0 -99.7 360.0 14.5 34.4 16.6