==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 30-NOV-05 2F76 . COMPND 2 MOLECULE: CORE PROTEIN P10; . SOURCE 2 ORGANISM_SCIENTIFIC: SIMIAN RETROVIRUS 1; . AUTHOR J.VLACH,J.LIPOV,V.VEVERKA,J.LANG,P.SRB,M.RUMLOVA,E.HUNTER,T. . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7862.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 69.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 55 55.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 X M 0 0 228 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -26.9 64.7 -1.2 -1.0 2 2 X G + 0 0 82 1,-0.2 2,-0.6 2,-0.1 0, 0.0 0.905 360.0 46.5 -64.0 -42.0 62.0 1.0 -2.5 3 3 X Q - 0 0 143 1,-0.2 -1,-0.2 0, 0.0 3,-0.0 -0.909 66.5-162.8-107.7 120.6 63.7 1.0 -5.9 4 4 X E S S+ 0 0 180 -2,-0.6 2,-0.5 1,-0.1 -1,-0.2 0.911 83.4 44.1 -64.8 -43.2 64.9 -2.4 -7.2 5 5 X L S S+ 0 0 104 4,-0.0 2,-0.3 3,-0.0 -1,-0.1 -0.902 72.6 159.0-108.7 130.3 67.2 -0.7 -9.8 6 6 X S > - 0 0 26 -2,-0.5 4,-1.6 1,-0.1 3,-0.2 -0.965 51.2-115.1-145.4 160.0 69.4 2.3 -8.8 7 7 X Q H > S+ 0 0 167 -2,-0.3 4,-1.7 1,-0.2 5,-0.1 0.815 116.0 58.7 -64.6 -30.4 72.5 4.0 -10.1 8 8 X H H > S+ 0 0 125 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.887 102.7 52.4 -66.4 -39.1 74.3 3.0 -6.9 9 9 X E H > S+ 0 0 31 1,-0.2 4,-2.0 -3,-0.2 -1,-0.2 0.914 108.4 50.0 -63.2 -43.7 73.6 -0.7 -7.6 10 10 X R H X S+ 0 0 151 -4,-1.6 4,-1.6 1,-0.2 -1,-0.2 0.868 105.6 57.8 -63.1 -37.3 75.1 -0.4 -11.1 11 11 X Y H X S+ 0 0 125 -4,-1.7 4,-1.6 1,-0.2 -1,-0.2 0.922 106.8 47.7 -59.6 -45.1 78.2 1.3 -9.7 12 12 X V H X S+ 0 0 0 -4,-1.7 4,-3.1 1,-0.2 -1,-0.2 0.934 104.6 59.4 -61.7 -47.6 78.9 -1.7 -7.4 13 13 X E H X S+ 0 0 67 -4,-2.0 4,-1.7 1,-0.3 -1,-0.2 0.877 104.9 51.4 -49.4 -40.3 78.5 -4.1 -10.3 14 14 X Q H X S+ 0 0 124 -4,-1.6 4,-2.6 1,-0.2 -1,-0.3 0.922 110.5 47.4 -64.4 -43.5 81.3 -2.3 -12.0 15 15 X L H X>S+ 0 0 36 -4,-1.6 4,-3.2 1,-0.2 5,-0.5 0.900 105.0 61.1 -63.8 -40.8 83.5 -2.6 -9.0 16 16 X K H X5S+ 0 0 44 -4,-3.1 4,-1.2 1,-0.2 -1,-0.2 0.915 112.9 36.1 -52.8 -47.1 82.7 -6.3 -8.7 17 17 X Q H X5S+ 0 0 131 -4,-1.7 4,-1.5 -5,-0.2 -2,-0.2 0.937 119.5 47.6 -73.0 -48.6 84.1 -7.0 -12.1 18 18 X A H <5S+ 0 0 46 -4,-2.6 3,-0.5 1,-0.2 4,-0.4 0.944 116.8 42.4 -58.3 -51.3 87.0 -4.5 -11.9 19 19 X L H ><>S+ 0 0 13 -4,-3.2 5,-1.4 1,-0.2 3,-1.4 0.824 106.4 65.1 -65.8 -31.1 88.2 -5.6 -8.5 20 20 X K H >< - 0 0 143 -2,-0.3 4,-1.7 1,-0.1 5,-0.2 -0.517 24.8-123.6 -84.3 152.6 79.2 -11.0 -3.9 28 28 X Y H > S+ 0 0 76 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.936 114.0 47.9 -58.8 -47.9 77.3 -8.1 -5.6 29 29 X A H > S+ 0 0 34 1,-0.2 4,-3.1 2,-0.2 5,-0.2 0.860 104.2 61.8 -62.1 -37.1 74.9 -7.8 -2.6 30 30 X D H > S+ 0 0 44 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.939 108.6 41.2 -56.4 -48.2 77.9 -7.8 -0.2 31 31 X L H X S+ 0 0 22 -4,-1.7 4,-2.4 2,-0.2 -1,-0.2 0.885 113.7 54.2 -66.5 -39.0 79.3 -4.6 -1.7 32 32 X L H X S+ 0 0 40 -4,-2.0 4,-1.9 1,-0.2 -2,-0.2 0.917 108.4 48.8 -61.8 -43.4 75.9 -3.1 -2.0 33 33 X K H X S+ 0 0 95 -4,-3.1 4,-1.9 1,-0.2 -1,-0.2 0.904 109.8 52.2 -62.9 -41.7 75.2 -3.7 1.7 34 34 X F H X S+ 0 0 7 -4,-1.9 4,-1.9 -5,-0.2 5,-0.3 0.927 107.6 51.4 -61.0 -45.5 78.6 -2.2 2.6 35 35 X F H X S+ 0 0 47 -4,-2.4 4,-1.6 1,-0.2 -1,-0.2 0.893 113.5 44.9 -58.7 -39.9 77.8 1.0 0.6 36 36 X D H X S+ 0 0 69 -4,-1.9 4,-2.0 2,-0.2 -1,-0.2 0.787 105.8 63.7 -73.9 -27.9 74.5 1.3 2.4 37 37 X F H X S+ 0 0 6 -4,-1.9 4,-1.9 2,-0.2 5,-0.3 0.957 108.2 38.3 -61.2 -51.9 76.2 0.6 5.7 38 38 X V H X S+ 0 0 8 -4,-1.9 4,-2.8 1,-0.2 6,-0.2 0.889 115.7 53.8 -66.4 -39.7 78.3 3.7 5.6 39 39 X K H < S+ 0 0 120 -4,-1.6 -1,-0.2 -5,-0.3 -2,-0.2 0.827 107.9 51.9 -63.8 -31.9 75.5 5.7 4.1 40 40 X D H < S+ 0 0 104 -4,-2.0 -2,-0.2 1,-0.2 -1,-0.2 0.933 128.9 17.6 -71.0 -48.4 73.3 4.7 7.0 41 41 X T H < S+ 0 0 57 -4,-1.9 -2,-0.2 1,-0.2 -3,-0.2 0.544 138.7 37.9 -99.1 -12.0 75.6 5.7 9.8 42 42 X C < + 0 0 7 -4,-2.8 -1,-0.2 -5,-0.3 -2,-0.1 -0.746 56.9 174.7-141.9 89.5 77.7 7.9 7.6 43 43 X P + 0 0 104 0, 0.0 2,-0.2 0, 0.0 -4,-0.1 0.499 64.8 82.2 -74.4 -2.1 75.8 10.0 5.0 44 44 X W - 0 0 156 -6,-0.2 -2,-0.0 2,-0.0 0, 0.0 -0.657 57.7-166.3-102.7 160.3 79.1 11.8 4.1 45 45 X F - 0 0 87 -2,-0.2 11,-0.1 2,-0.0 -6,-0.0 -0.469 14.4-164.4-144.6 67.5 81.9 10.6 1.9 46 46 X P - 0 0 66 0, 0.0 2,-0.4 0, 0.0 9,-0.1 -0.164 7.4-153.4 -54.1 144.0 85.0 12.8 2.4 47 47 X Q + 0 0 154 8,-0.1 2,-0.3 6,-0.0 4,-0.1 -0.968 16.7 171.4-126.9 141.2 87.7 12.5 -0.2 48 48 X E - 0 0 95 2,-0.5 4,-0.2 -2,-0.4 0, 0.0 -0.870 49.0 -97.3-139.7 172.2 91.5 13.1 0.0 49 49 X G S S+ 0 0 71 -2,-0.3 3,-0.2 2,-0.1 -1,-0.1 0.875 106.7 68.4 -59.3 -37.5 94.7 12.7 -2.0 50 50 X T S S- 0 0 91 1,-0.2 -2,-0.5 2,-0.1 4,-0.1 -0.314 120.0 -48.6 -79.0 165.4 95.3 9.4 -0.2 51 51 X I >> - 0 0 28 1,-0.2 3,-0.7 2,-0.1 4,-0.5 -0.057 55.0-164.9 -36.7 107.6 93.2 6.3 -0.7 52 52 X D H >> S+ 0 0 29 1,-0.2 3,-1.1 -4,-0.2 4,-0.9 0.888 85.4 63.3 -67.4 -40.2 89.7 7.8 -0.3 53 53 X I H 3> S+ 0 0 40 1,-0.3 4,-2.5 2,-0.2 5,-0.4 0.718 87.4 76.8 -57.6 -19.4 88.2 4.4 0.1 54 54 X K H <> S+ 0 0 111 -3,-0.7 4,-2.2 1,-0.2 -1,-0.3 0.948 95.0 44.8 -57.4 -49.6 90.3 4.2 3.2 55 55 X R H X S+ 0 0 53 -4,-1.7 4,-1.3 -5,-0.3 3,-0.5 0.990 120.5 34.6 -66.4 -61.2 85.2 -0.1 13.2 63 63 X F H 3X S+ 0 0 86 -4,-2.3 4,-3.2 1,-0.2 5,-0.2 0.803 113.7 63.0 -64.7 -27.2 81.5 -0.5 13.5 64 64 X Q H 3X S+ 0 0 6 -4,-3.6 4,-3.2 -5,-0.3 -1,-0.2 0.873 97.3 56.8 -64.2 -38.6 81.9 -3.9 11.8 65 65 X D H - 0 0 38 0, 0.0 3,-1.8 0, 0.0 4,-0.2 -0.196 22.2-121.4 -57.8 147.9 81.4 -9.4 6.9 77 77 X V T >> S+ 0 0 83 1,-0.3 3,-2.9 2,-0.2 4,-0.7 0.782 103.2 85.5 -61.2 -27.3 85.1 -8.9 7.9 78 78 X T H 3> S+ 0 0 61 1,-0.3 4,-1.9 2,-0.2 -1,-0.3 0.688 72.9 78.3 -49.1 -15.6 86.1 -10.6 4.7 79 79 X A H <> S+ 0 0 12 -3,-1.8 4,-2.1 1,-0.2 -1,-0.3 0.876 86.4 56.4 -62.4 -37.8 85.7 -7.0 3.4 80 80 X F H <> S+ 0 0 90 -3,-2.9 4,-1.3 2,-0.2 -1,-0.2 0.900 105.6 50.3 -61.4 -43.2 89.1 -6.1 4.9 81 81 X S H >X S+ 0 0 75 -4,-0.7 4,-1.0 1,-0.2 3,-0.9 0.966 112.5 45.1 -60.8 -52.1 90.9 -8.9 3.0 82 82 X Y H 3X S+ 0 0 63 -4,-1.9 4,-1.4 1,-0.3 3,-0.5 0.855 105.8 63.9 -60.9 -32.0 89.4 -7.9 -0.4 83 83 X W H 3X S+ 0 0 14 -4,-2.1 4,-2.7 1,-0.2 -1,-0.3 0.860 91.9 63.6 -60.1 -34.9 90.2 -4.3 0.6 84 84 X N H < S+ 0 0 129 -4,-2.2 3,-1.5 1,-0.2 -1,-0.2 0.902 109.4 52.2 -61.6 -40.7 99.1 1.6 -8.8 93 93 X K H 3< S+ 0 0 149 -4,-1.5 -1,-0.2 1,-0.3 -2,-0.2 0.905 96.1 66.4 -62.2 -41.5 96.7 4.2 -10.4 94 94 X E T 3< S+ 0 0 127 -4,-2.4 2,-0.4 -5,-0.1 -1,-0.3 0.550 96.8 75.1 -57.9 -3.4 98.2 7.0 -8.3 95 95 X V S < S+ 0 0 103 -3,-1.5 -1,-0.0 1,-0.3 0, 0.0 -0.945 103.7 3.0-116.8 132.1 101.3 6.2 -10.4 96 96 X N S S- 0 0 117 -2,-0.4 -1,-0.3 1,-0.1 -2,-0.0 0.998 85.7-132.7 60.9 73.0 101.7 7.3 -14.0 97 97 X P - 0 0 115 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.226 24.0-162.3 -56.8 141.5 98.4 9.2 -14.5 98 98 X Q - 0 0 146 -5,-0.1 2,-0.4 0, 0.0 -2,-0.0 -0.962 8.2-152.9-131.1 147.8 96.5 8.4 -17.7 99 99 X V 0 0 135 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.974 360.0 360.0-124.0 133.6 93.7 10.2 -19.6 100 100 X M 0 0 237 -2,-0.4 0, 0.0 0, 0.0 0, 0.0 -0.344 360.0 360.0-116.6 360.0 91.0 8.6 -21.8