==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 30-NOV-05 2F77 . COMPND 2 MOLECULE: CORE PROTEIN P10; . SOURCE 2 ORGANISM_SCIENTIFIC: SIMIAN RETROVIRUS 1; . AUTHOR J.VLACH,J.LIPOV,V.VEVERKA,J.LANG,P.SRB,M.RUMLOVA,E.HUNTER,T. . 100 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8067.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 66 66.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 55 55.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 X M 0 0 145 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-107.7 71.6 -8.3 -0.2 2 2 X G + 0 0 85 1,-0.3 2,-0.3 0, 0.0 0, 0.0 0.618 360.0 99.2 82.1 9.8 70.1 -11.3 -2.0 3 3 X Q S S- 0 0 121 3,-0.0 -1,-0.3 1,-0.0 0, 0.0 -0.951 86.2 -91.9-129.5 150.0 72.8 -13.5 -0.6 4 4 X E - 0 0 178 -2,-0.3 2,-1.0 1,-0.1 5,-0.1 -0.287 40.8-124.5 -57.1 139.3 72.8 -16.0 2.3 5 5 X L - 0 0 57 4,-0.1 -1,-0.1 3,-0.0 2,-0.1 -0.748 30.9-165.7 -90.9 104.1 74.0 -14.2 5.5 6 6 X S > - 0 0 57 -2,-1.0 4,-3.0 1,-0.1 5,-0.3 -0.350 38.5 -98.0 -82.3 168.6 77.0 -16.3 6.8 7 7 X Q H > S+ 0 0 168 1,-0.2 4,-1.7 2,-0.2 -1,-0.1 0.917 127.9 48.1 -53.8 -41.4 78.4 -15.8 10.4 8 8 X H H > S+ 0 0 126 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.947 111.6 48.3 -66.4 -45.6 81.1 -13.6 8.9 9 9 X E H > S+ 0 0 50 1,-0.2 4,-1.6 2,-0.2 -2,-0.2 0.894 109.1 54.8 -63.0 -36.0 78.6 -11.5 6.9 10 10 X R H X S+ 0 0 149 -4,-3.0 4,-1.9 1,-0.2 -1,-0.2 0.896 102.7 56.5 -65.4 -37.0 76.4 -11.2 10.0 11 11 X Y H X S+ 0 0 138 -4,-1.7 4,-2.4 -5,-0.3 -1,-0.2 0.927 103.7 53.6 -61.6 -41.7 79.4 -9.7 11.9 12 12 X V H X S+ 0 0 11 -4,-1.6 4,-2.9 1,-0.2 5,-0.2 0.936 104.5 55.4 -59.6 -43.3 79.8 -7.0 9.3 13 13 X E H X S+ 0 0 85 -4,-1.6 4,-1.6 1,-0.2 -1,-0.2 0.947 109.6 45.7 -56.3 -46.9 76.1 -6.0 9.7 14 14 X Q H X S+ 0 0 125 -4,-1.9 4,-1.6 1,-0.2 -1,-0.2 0.906 111.1 53.8 -64.0 -38.0 76.6 -5.6 13.5 15 15 X L H X S+ 0 0 69 -4,-2.4 4,-2.1 1,-0.2 -2,-0.2 0.929 104.5 54.8 -62.9 -41.5 79.8 -3.6 12.8 16 16 X K H X S+ 0 0 16 -4,-2.9 4,-2.3 1,-0.2 -1,-0.2 0.899 102.2 58.0 -59.8 -37.7 77.9 -1.3 10.5 17 17 X Q H X S+ 0 0 111 -4,-1.6 4,-1.5 1,-0.2 -1,-0.2 0.945 106.6 47.5 -59.2 -45.0 75.4 -0.5 13.3 18 18 X A H X S+ 0 0 38 -4,-1.6 4,-1.5 1,-0.2 -1,-0.2 0.900 108.6 55.6 -63.5 -37.3 78.3 0.7 15.5 19 19 X L H X>S+ 0 0 22 -4,-2.1 4,-1.1 1,-0.2 5,-0.8 0.914 101.8 57.3 -62.8 -39.1 79.6 2.8 12.6 20 20 X K H ><5S+ 0 0 118 -4,-2.3 3,-0.8 1,-0.2 4,-0.3 0.931 104.4 51.7 -58.3 -42.5 76.2 4.5 12.3 21 21 X T H 3<5S+ 0 0 118 -4,-1.5 -1,-0.2 1,-0.3 -2,-0.2 0.864 106.1 55.0 -63.7 -31.7 76.5 5.6 16.0 22 22 X R H 3<5S- 0 0 190 -4,-1.5 -1,-0.3 -3,-0.2 -2,-0.2 0.732 134.8 -89.1 -73.6 -18.6 80.0 7.0 15.1 23 23 X G T <<5S+ 0 0 62 -4,-1.1 2,-0.4 -3,-0.8 -3,-0.2 0.755 78.7 141.4 112.9 47.8 78.2 9.1 12.4 24 24 X V < + 0 0 32 -5,-0.8 2,-0.4 -4,-0.3 -1,-0.2 -0.967 22.5 178.8-122.6 132.9 78.3 6.9 9.2 25 25 X K + 0 0 165 -2,-0.4 2,-0.3 29,-0.1 73,-0.1 -0.791 24.8 135.9-134.8 94.0 75.4 6.6 6.7 26 26 X V - 0 0 15 -2,-0.4 2,-0.1 -10,-0.1 -2,-0.0 -0.929 55.8 -94.4-135.4 160.7 76.0 4.3 3.8 27 27 X K > - 0 0 77 -2,-0.3 4,-0.8 1,-0.1 3,-0.4 -0.399 29.6-126.6 -72.7 151.5 74.0 1.7 1.9 28 28 X Y H >> S+ 0 0 41 1,-0.2 4,-1.4 2,-0.2 3,-1.1 0.919 109.4 62.4 -65.7 -40.2 74.4 -1.9 3.0 29 29 X A H 3> S+ 0 0 41 1,-0.3 4,-2.5 2,-0.2 -1,-0.2 0.863 95.2 62.8 -54.4 -32.6 75.2 -3.0 -0.6 30 30 X D H 3> S+ 0 0 5 -3,-0.4 4,-2.3 1,-0.2 -1,-0.3 0.902 98.7 54.7 -61.4 -37.5 78.2 -0.7 -0.4 31 31 X L H X S+ 0 0 61 -4,-2.4 3,-0.9 1,-0.3 4,-0.7 0.935 108.7 48.8 -55.9 -44.7 89.4 -5.7 -1.7 39 39 X K H 3<>S+ 0 0 108 -4,-2.2 5,-1.5 1,-0.3 3,-0.4 0.862 107.0 56.9 -64.2 -31.5 89.5 -9.2 -3.4 40 40 X D H 3<5S+ 0 0 10 -4,-1.8 -1,-0.3 -5,-0.2 -2,-0.2 0.742 87.8 80.8 -70.7 -19.3 90.0 -7.3 -6.8 41 41 X T H <<5S- 0 0 39 -4,-1.2 -1,-0.2 -3,-0.9 -2,-0.2 0.955 123.5 -14.3 -53.9 -52.2 93.1 -5.7 -5.3 42 42 X C T <5S+ 0 0 99 -4,-0.7 3,-0.2 -3,-0.4 -2,-0.1 0.741 134.4 57.9-116.1 -60.7 95.3 -8.8 -6.0 43 43 X P T 5S+ 0 0 66 0, 0.0 2,-0.5 0, 0.0 -3,-0.2 0.886 124.2 16.5 -41.5 -54.6 93.1 -11.8 -6.8 44 44 X W < - 0 0 140 -5,-1.5 -2,-0.0 1,-0.2 0, 0.0 -0.936 63.2-166.0-127.6 113.0 91.4 -10.1 -9.7 45 45 X F S S+ 0 0 114 -2,-0.5 -1,-0.2 -3,-0.2 -5,-0.1 0.937 71.1 83.9 -61.5 -44.5 93.0 -7.0 -11.2 46 46 X P S S- 0 0 96 0, 0.0 2,-0.2 0, 0.0 -2,-0.1 -0.254 77.8-134.7 -59.6 141.7 89.9 -6.1 -13.2 47 47 X Q - 0 0 55 35,-0.0 2,-0.3 -6,-0.0 -2,-0.1 -0.630 21.3-174.4 -98.0 159.2 87.2 -4.2 -11.2 48 48 X E + 0 0 173 -2,-0.2 -8,-0.1 -15,-0.1 2,-0.1 -0.961 42.8 33.5-154.4 133.7 83.4 -5.0 -11.3 49 49 X G S S- 0 0 53 -2,-0.3 2,-0.4 2,-0.0 -1,-0.0 -0.121 84.8 -77.6 104.9 155.2 80.4 -3.3 -9.8 50 50 X T - 0 0 76 -2,-0.1 2,-0.4 39,-0.0 -17,-0.1 -0.748 41.3-146.0 -91.9 135.1 79.6 0.4 -9.2 51 51 X I - 0 0 17 -2,-0.4 2,-0.2 35,-0.1 -2,-0.0 -0.834 15.1-124.8-102.2 134.2 81.3 2.1 -6.2 52 52 X D > - 0 0 20 -2,-0.4 4,-1.2 1,-0.1 3,-0.1 -0.536 9.6-139.8 -75.6 137.9 79.4 4.8 -4.3 53 53 X I H > S+ 0 0 76 -2,-0.2 4,-0.8 1,-0.2 -1,-0.1 0.881 103.1 57.8 -65.9 -34.2 81.3 8.1 -4.0 54 54 X K H >4 S+ 0 0 67 1,-0.2 3,-0.6 2,-0.2 4,-0.5 0.906 108.6 45.1 -63.9 -38.0 80.2 8.5 -0.3 55 55 X F H >> S+ 0 0 4 1,-0.2 4,-1.8 2,-0.2 3,-0.6 0.743 95.0 78.6 -78.2 -20.4 81.7 5.1 0.5 56 56 X W H 3X S+ 0 0 84 -4,-1.2 4,-2.4 1,-0.2 -1,-0.2 0.877 85.9 61.6 -56.2 -34.0 84.9 6.0 -1.4 57 57 X R H S+ 0 0 51 -3,-0.6 4,-3.2 -4,-0.5 5,-0.3 0.916 109.7 52.6 -66.4 -39.7 86.0 5.0 3.9 59 59 X V H X S+ 0 0 4 -4,-1.8 4,-3.4 2,-0.2 5,-0.4 0.934 107.0 52.5 -62.8 -43.1 88.0 3.1 1.3 60 60 X G H X S+ 0 0 18 -4,-2.4 4,-1.9 1,-0.2 -1,-0.2 0.948 115.9 39.6 -59.3 -46.6 90.6 5.9 1.2 61 61 X D H X S+ 0 0 105 -4,-1.9 4,-2.1 -5,-0.2 -2,-0.2 0.927 117.9 48.8 -70.0 -42.2 91.0 5.8 5.0 62 62 X C H X S+ 0 0 39 -4,-3.2 4,-2.1 -5,-0.2 5,-0.2 0.960 113.1 46.3 -63.9 -48.4 90.8 2.0 5.2 63 63 X F H X S+ 0 0 12 -4,-3.4 4,-2.3 -5,-0.3 -1,-0.2 0.914 110.4 54.4 -61.8 -39.3 93.4 1.5 2.4 64 64 X Q H X S+ 0 0 107 -4,-1.9 4,-2.0 -5,-0.4 5,-0.3 0.915 106.5 51.9 -61.9 -39.7 95.7 4.1 4.0 65 65 X D H X S+ 0 0 97 -4,-2.1 4,-2.4 1,-0.2 -1,-0.2 0.940 110.2 47.9 -63.1 -44.1 95.6 2.2 7.3 66 66 X Y H X>S+ 0 0 113 -4,-2.1 4,-3.1 2,-0.2 5,-1.2 0.887 107.0 58.5 -65.5 -35.2 96.5 -1.1 5.5 67 67 X Y H <5S+ 0 0 108 -4,-2.3 -2,-0.2 3,-0.2 -1,-0.2 0.978 112.4 37.4 -59.0 -54.4 99.4 0.7 3.7 68 68 X N H <5S+ 0 0 111 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.897 116.6 54.9 -65.7 -36.6 101.1 1.8 7.0 69 69 X T H <5S- 0 0 94 -4,-2.4 -2,-0.2 -5,-0.3 -1,-0.2 0.958 139.1 -6.2 -62.9 -48.0 100.1 -1.5 8.6 70 70 X F T <5S- 0 0 135 -4,-3.1 -3,-0.2 1,-0.2 -2,-0.1 0.761 102.3-119.4-114.8 -52.4 101.8 -3.6 5.9 71 71 X G >< - 0 0 10 -5,-1.2 4,-1.2 1,-0.1 3,-0.4 -0.930 53.0 -37.2 140.3-165.9 103.0 -1.2 3.1 72 72 X P T 4 S+ 0 0 75 0, 0.0 6,-0.2 0, 0.0 -1,-0.1 0.673 119.4 77.3 -67.2 -16.6 102.3 -0.6 -0.6 73 73 X E T 4 S+ 0 0 176 2,-0.2 -6,-0.1 1,-0.2 -2,-0.0 0.980 100.2 37.6 -60.5 -54.6 102.1 -4.4 -1.2 74 74 X K T 4 S+ 0 0 112 -3,-0.4 -1,-0.2 1,-0.3 -7,-0.1 0.938 145.3 2.1 -63.7 -43.6 98.6 -4.6 0.3 75 75 X V S < S+ 0 0 11 -4,-1.2 -1,-0.3 -9,-0.1 -2,-0.2 -0.701 80.6 175.3-148.6 92.4 97.6 -1.3 -1.3 76 76 X P >> - 0 0 37 0, 0.0 3,-1.1 0, 0.0 4,-0.6 0.036 56.2 -76.7 -82.6-166.6 100.2 0.5 -3.5 77 77 X V H 3> S+ 0 0 114 1,-0.2 4,-1.9 2,-0.2 5,-0.2 0.677 122.7 76.7 -70.7 -12.6 99.8 3.7 -5.5 78 78 X T H 3> S+ 0 0 59 1,-0.2 4,-3.4 2,-0.2 5,-0.3 0.872 84.0 63.3 -66.2 -33.2 97.9 1.6 -8.1 79 79 X A H <> S+ 0 0 9 -3,-1.1 4,-2.6 1,-0.2 -1,-0.2 0.949 105.8 43.9 -57.1 -47.2 94.8 1.6 -5.9 80 80 X F H X S+ 0 0 114 -4,-0.6 4,-2.3 2,-0.2 -1,-0.2 0.947 114.8 49.0 -64.9 -45.7 94.5 5.4 -6.2 81 81 X S H X S+ 0 0 68 -4,-1.9 4,-1.4 1,-0.2 -2,-0.2 0.952 113.8 46.1 -59.8 -47.1 95.2 5.3 -10.0 82 82 X Y H X S+ 0 0 78 -4,-3.4 4,-1.8 1,-0.2 -1,-0.2 0.922 110.5 53.7 -63.1 -40.9 92.6 2.5 -10.4 83 83 X W H X S+ 0 0 10 -4,-2.6 4,-3.0 -5,-0.3 5,-0.2 0.906 101.2 60.3 -61.7 -38.0 90.1 4.4 -8.3 84 84 X N H X S+ 0 0 88 -4,-2.3 4,-1.4 1,-0.2 -1,-0.2 0.928 104.4 49.6 -56.0 -42.6 90.5 7.4 -10.5 85 85 X L H X S+ 0 0 101 -4,-1.4 4,-1.7 -3,-0.2 -1,-0.2 0.925 110.7 49.8 -63.3 -41.6 89.3 5.4 -13.4 86 86 X I H X S+ 0 0 17 -4,-1.8 4,-2.6 1,-0.2 5,-0.4 0.938 103.4 59.6 -63.8 -43.5 86.3 4.2 -11.4 87 87 X K H X S+ 0 0 88 -4,-3.0 4,-2.4 1,-0.2 -1,-0.2 0.894 106.1 49.4 -52.5 -37.6 85.5 7.8 -10.4 88 88 X E H X S+ 0 0 111 -4,-1.4 4,-2.6 -5,-0.2 -1,-0.2 0.930 109.0 51.1 -70.2 -42.3 85.1 8.6 -14.1 89 89 X L H X S+ 0 0 117 -4,-1.7 4,-1.5 1,-0.2 -2,-0.2 0.956 118.1 37.5 -61.3 -48.0 82.8 5.6 -14.7 90 90 X I H < S+ 0 0 17 -4,-2.6 -1,-0.2 2,-0.2 -2,-0.2 0.891 114.9 55.3 -72.7 -36.7 80.4 6.5 -11.9 91 91 X D H < S+ 0 0 86 -4,-2.4 -2,-0.2 -5,-0.4 -1,-0.2 0.916 106.0 52.0 -63.1 -39.7 80.8 10.2 -12.5 92 92 X K H < S+ 0 0 189 -4,-2.6 2,-0.7 -5,-0.2 -1,-0.2 0.923 104.8 62.5 -63.6 -41.0 79.7 9.7 -16.2 93 93 X K S < S- 0 0 140 -4,-1.5 2,-0.1 -5,-0.2 -1,-0.1 -0.749 90.2-132.6 -88.7 117.5 76.6 7.8 -15.0 94 94 X E + 0 0 176 -2,-0.7 2,-0.3 2,-0.0 -3,-0.1 -0.430 31.9 179.8 -67.7 138.2 74.3 10.0 -12.9 95 95 X V - 0 0 82 -2,-0.1 -1,-0.0 -4,-0.1 -5,-0.0 -0.927 28.8-138.4-136.9 162.5 73.1 8.3 -9.7 96 96 X N + 0 0 121 -2,-0.3 4,-0.1 2,-0.0 -2,-0.0 -0.700 29.7 176.4-125.3 82.2 70.9 9.3 -6.7 97 97 X P - 0 0 23 0, 0.0 3,-0.1 0, 0.0 -71,-0.0 0.511 59.8 -55.7 -59.3-147.1 72.6 8.0 -3.5 98 98 X Q S S+ 0 0 83 1,-0.2 2,-0.4 -73,-0.1 -72,-0.1 0.964 130.3 20.4 -65.9 -49.7 71.1 8.8 -0.0 99 99 X V 0 0 89 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.971 360.0 360.0-124.0 130.3 71.1 12.6 -0.6 100 100 X M 0 0 188 -2,-0.4 0, 0.0 -3,-0.1 0, 0.0 -0.265 360.0 360.0 47.4 360.0 71.2 14.2 -4.0