==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/ RNA 02-DEC-05 2F8K . COMPND 2 MOLECULE: 5'-R(*UP*AP*AP*UP*CP*UP*UP*UP*GP*AP*CP*AP*GP*AP*U . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.AVIV,Z.LIN,G.BEN-ARI,C.A.SMIBERT,F.SICHERI . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5184.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 69.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 17 20.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 40.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 4 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 440 A S 0 0 118 0, 0.0 3,-0.4 0, 0.0 6,-0.2 0.000 360.0 360.0 360.0 -60.4 9.4 7.1 -17.4 2 441 A S + 0 0 33 1,-0.2 21,-0.1 21,-0.2 22,-0.1 0.466 360.0 79.2 -80.8 -3.1 6.1 7.2 -15.5 3 442 A M S S+ 0 0 42 4,-0.1 -1,-0.2 20,-0.1 21,-0.0 -0.086 73.6 104.7 -95.1 32.9 7.3 3.7 -14.6 4 443 A N S > S- 0 0 56 -3,-0.4 4,-3.0 1,-0.1 3,-0.4 -0.881 79.7-120.3-113.8 144.6 9.7 5.0 -11.9 5 444 A P H > S+ 0 0 44 0, 0.0 4,-1.7 0, 0.0 -1,-0.1 0.846 111.9 57.9 -47.2 -39.7 9.3 5.0 -8.1 6 445 A K H 4 S+ 0 0 74 1,-0.2 -4,-0.1 2,-0.2 -3,-0.0 0.923 116.0 34.8 -61.5 -43.5 9.5 8.8 -7.9 7 446 A S H >4 S+ 0 0 32 -3,-0.4 3,-1.2 -6,-0.2 -1,-0.2 0.881 117.1 52.5 -75.9 -42.5 6.5 9.2 -10.3 8 447 A L H 3< S+ 0 0 0 -4,-3.0 -2,-0.2 1,-0.3 -1,-0.2 0.732 111.7 46.2 -69.2 -23.0 4.5 6.1 -9.1 9 448 A T T 3< S+ 0 0 11 -4,-1.7 71,-0.4 -5,-0.3 -1,-0.3 0.167 75.3 134.7-109.0 17.7 4.6 7.2 -5.4 10 449 A D X> - 0 0 60 -3,-1.2 4,-2.6 1,-0.1 3,-0.6 -0.546 56.1-138.2 -63.6 125.9 3.7 10.8 -6.0 11 450 A P H 3> S+ 0 0 25 0, 0.0 4,-1.9 0, 0.0 -1,-0.1 0.842 100.5 57.8 -60.3 -37.8 1.1 11.5 -3.3 12 451 A K H 34 S+ 0 0 173 2,-0.2 7,-0.1 1,-0.2 8,-0.1 0.855 113.3 39.5 -54.1 -42.7 -1.1 13.5 -5.7 13 452 A L H X4 S+ 0 0 30 -3,-0.6 3,-1.8 2,-0.2 7,-0.5 0.883 110.8 56.0 -79.7 -41.9 -1.3 10.6 -8.0 14 453 A L H 3< S+ 0 0 2 -4,-2.6 24,-0.5 1,-0.3 3,-0.3 0.862 108.3 51.1 -57.4 -33.5 -1.7 7.9 -5.3 15 454 A K T 3< S+ 0 0 130 -4,-1.9 -1,-0.3 1,-0.2 2,-0.2 0.395 113.1 46.2 -86.4 4.2 -4.7 9.8 -4.1 16 455 A N X> - 0 0 70 -3,-1.8 4,-2.0 1,-0.1 3,-0.7 -0.686 66.5-177.9-146.9 81.7 -6.3 10.0 -7.5 17 456 A I H 3> S+ 0 0 10 -3,-0.3 4,-3.4 1,-0.3 5,-0.3 0.875 80.9 59.7 -57.6 -42.9 -6.2 6.5 -9.1 18 457 A P H 3> S+ 0 0 41 0, 0.0 4,-2.1 0, 0.0 -1,-0.3 0.926 112.4 42.5 -50.2 -40.7 -7.8 7.6 -12.4 19 458 A M H <> S+ 0 0 93 -3,-0.7 4,-1.7 2,-0.2 -2,-0.2 0.843 111.4 53.8 -73.7 -35.2 -4.9 10.0 -12.7 20 459 A W H X S+ 0 0 2 -4,-2.0 4,-0.8 -7,-0.5 -1,-0.2 0.914 112.5 45.3 -61.6 -44.6 -2.3 7.4 -11.5 21 460 A L H ><>S+ 0 0 0 -4,-3.4 5,-3.4 1,-0.2 3,-0.7 0.896 107.1 58.4 -65.3 -42.4 -3.6 5.1 -14.2 22 461 A K H ><5S+ 0 0 113 -4,-2.1 3,-1.4 -5,-0.3 -1,-0.2 0.869 101.9 55.1 -55.2 -39.4 -3.6 7.9 -16.8 23 462 A S H 3<5S+ 0 0 36 -4,-1.7 -1,-0.2 1,-0.3 -2,-0.2 0.796 110.4 45.1 -67.6 -27.4 0.2 8.4 -16.3 24 463 A L T <<5S- 0 0 1 -4,-0.8 -1,-0.3 -3,-0.7 -2,-0.2 0.351 116.5-117.3 -91.6 5.7 0.7 4.7 -17.0 25 464 A R T < 5S+ 0 0 196 -3,-1.4 -3,-0.2 -4,-0.2 3,-0.2 0.803 88.1 115.0 57.9 34.1 -1.6 5.0 -20.0 26 465 A L > < + 0 0 16 -5,-3.4 3,-2.3 1,-0.1 -4,-0.3 0.139 25.1 123.3-116.4 18.0 -3.9 2.5 -18.3 27 466 A H G > + 0 0 85 -6,-0.5 3,-2.2 1,-0.3 4,-0.3 0.664 55.5 78.0 -59.4 -20.1 -6.8 4.8 -17.7 28 467 A K G 3 S+ 0 0 161 1,-0.3 3,-0.3 -3,-0.2 -1,-0.3 0.736 93.3 54.8 -61.5 -18.9 -9.3 2.5 -19.6 29 468 A Y G <> S+ 0 0 20 -3,-2.3 4,-1.9 1,-0.2 -1,-0.3 0.251 77.2 104.0 -94.7 14.1 -9.3 0.5 -16.3 30 469 A S H <> S+ 0 0 22 -3,-2.2 4,-2.5 1,-0.2 -1,-0.2 0.909 78.6 48.8 -65.0 -39.8 -10.2 3.5 -14.3 31 470 A D H 4 S+ 0 0 159 -3,-0.3 4,-0.3 -4,-0.3 -1,-0.2 0.907 115.4 45.9 -64.0 -38.4 -13.9 2.4 -13.9 32 471 A A H 4 S+ 0 0 35 -4,-0.2 -1,-0.2 1,-0.2 -2,-0.2 0.783 126.7 25.6 -72.5 -31.2 -12.7 -1.1 -12.8 33 472 A L H >< S+ 0 0 0 -4,-1.9 3,-1.7 1,-0.1 -2,-0.2 0.635 93.5 86.4-113.8 -19.0 -10.0 0.0 -10.4 34 473 A S T 3< S+ 0 0 55 -4,-2.5 -17,-0.2 1,-0.3 -3,-0.1 0.605 79.5 67.9 -72.7 -13.0 -10.7 3.5 -9.0 35 474 A G T 3 S+ 0 0 76 -4,-0.3 -1,-0.3 -5,-0.2 -2,-0.1 0.574 87.2 81.2 -78.4 -9.6 -13.0 2.3 -6.1 36 475 A T S < S- 0 0 16 -3,-1.7 -19,-0.1 4,-0.0 2,-0.0 -0.865 84.4-125.5-100.2 125.9 -9.9 0.7 -4.4 37 476 A P >> - 0 0 62 0, 0.0 4,-3.1 0, 0.0 3,-1.8 -0.366 27.8-109.5 -69.4 153.2 -7.6 3.0 -2.4 38 477 A W H 3> S+ 0 0 17 -24,-0.5 4,-2.4 1,-0.3 5,-0.2 0.874 116.0 59.6 -53.7 -43.2 -4.0 2.9 -3.4 39 478 A I H 34 S+ 0 0 66 1,-0.2 -1,-0.3 2,-0.2 45,-0.0 0.697 117.9 32.3 -61.6 -23.6 -2.9 1.1 -0.2 40 479 A E H X4 S+ 0 0 116 -3,-1.8 3,-1.5 2,-0.1 4,-0.3 0.756 113.1 62.4 -94.6 -39.8 -5.2 -1.8 -1.1 41 480 A L H >< S+ 0 0 2 -4,-3.1 3,-1.4 1,-0.3 -2,-0.2 0.850 97.0 57.0 -53.6 -41.7 -4.9 -1.5 -4.8 42 481 A I T 3< S+ 0 0 5 -4,-2.4 -1,-0.3 1,-0.3 29,-0.1 0.627 104.3 54.4 -73.6 -11.5 -1.1 -2.2 -4.9 43 482 A Y T < S+ 0 0 116 -3,-1.5 -1,-0.3 -5,-0.2 -2,-0.2 0.400 79.8 113.4-102.2 3.0 -1.7 -5.5 -3.1 44 483 A L < - 0 0 34 -3,-1.4 2,-0.2 -4,-0.3 23,-0.1 -0.431 59.3-134.6 -69.9 150.7 -4.2 -7.0 -5.6 45 484 A D > - 0 0 78 -2,-0.1 4,-2.9 1,-0.1 5,-0.2 -0.469 24.4 -97.6 -99.6 174.4 -3.1 -10.0 -7.6 46 485 A D H > S+ 0 0 65 1,-0.2 4,-1.8 2,-0.2 5,-0.2 0.912 123.2 51.2 -51.9 -47.7 -3.3 -11.1 -11.2 47 486 A E H > S+ 0 0 150 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.902 114.1 43.1 -60.1 -45.1 -6.4 -13.3 -10.5 48 487 A T H > S+ 0 0 52 2,-0.2 4,-2.4 1,-0.2 -2,-0.2 0.870 108.9 58.0 -67.8 -43.1 -8.2 -10.4 -8.8 49 488 A L H <>S+ 0 0 0 -4,-2.9 5,-2.4 1,-0.2 4,-0.5 0.879 109.5 45.2 -55.4 -40.8 -7.2 -7.8 -11.4 50 489 A E H ><5S+ 0 0 88 -4,-1.8 3,-1.6 3,-0.2 -1,-0.2 0.924 108.3 55.4 -70.2 -43.7 -8.9 -9.9 -14.1 51 490 A K H 3<5S+ 0 0 89 -4,-1.8 -2,-0.2 1,-0.3 -1,-0.2 0.922 107.3 52.8 -53.5 -42.5 -12.0 -10.5 -12.0 52 491 A K T 3<5S- 0 0 88 -4,-2.4 -1,-0.3 2,-0.1 -2,-0.2 0.607 133.0 -87.2 -68.1 -17.2 -12.3 -6.7 -11.7 53 492 A G T < 5S+ 0 0 28 -3,-1.6 2,-1.5 -4,-0.5 -3,-0.2 0.508 83.4 132.6 120.0 7.5 -12.1 -6.2 -15.5 54 493 A V < + 0 0 0 -5,-2.4 -1,-0.2 1,-0.2 6,-0.1 -0.713 26.5 165.7 -85.5 87.8 -8.4 -6.0 -16.4 55 494 A L + 0 0 131 -2,-1.5 2,-0.6 -3,-0.1 -1,-0.2 0.695 44.2 84.3 -83.9 -22.6 -8.8 -8.4 -19.3 56 495 A A >> - 0 0 45 -3,-0.2 4,-1.8 1,-0.2 3,-0.7 -0.762 66.4-150.5 -89.3 123.2 -5.5 -7.8 -21.2 57 496 A L H 3> S+ 0 0 83 -2,-0.6 4,-2.5 1,-0.2 5,-0.2 0.858 97.2 58.0 -56.5 -42.1 -2.7 -9.8 -19.8 58 497 A G H 3> S+ 0 0 47 1,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.832 107.3 49.0 -58.2 -34.2 -0.1 -7.1 -20.8 59 498 A A H <> S+ 0 0 11 -3,-0.7 4,-2.8 2,-0.2 -2,-0.2 0.870 109.6 49.9 -73.0 -41.8 -2.1 -4.6 -18.7 60 499 A R H X S+ 0 0 18 -4,-1.8 4,-2.3 2,-0.2 -2,-0.2 0.851 110.8 51.3 -63.9 -37.5 -2.2 -6.9 -15.7 61 500 A R H X S+ 0 0 165 -4,-2.5 4,-1.4 2,-0.2 -2,-0.2 0.885 111.7 45.9 -64.9 -43.0 1.6 -7.4 -16.1 62 501 A K H X S+ 0 0 49 -4,-1.6 4,-2.6 2,-0.2 -2,-0.2 0.918 113.0 50.7 -67.6 -44.3 2.2 -3.7 -16.2 63 502 A L H X S+ 0 0 0 -4,-2.8 4,-2.8 1,-0.2 -2,-0.2 0.941 110.4 48.4 -54.1 -49.3 -0.1 -3.1 -13.2 64 503 A L H X S+ 0 0 56 -4,-2.3 4,-1.7 1,-0.2 -1,-0.2 0.799 111.4 51.0 -67.3 -28.8 1.7 -5.8 -11.1 65 504 A K H X S+ 0 0 139 -4,-1.4 4,-1.3 2,-0.2 -1,-0.2 0.962 112.0 45.2 -72.3 -51.1 5.0 -4.3 -12.0 66 505 A A H X S+ 0 0 0 -4,-2.6 4,-1.9 1,-0.2 3,-0.4 0.905 111.5 54.7 -57.6 -42.6 4.0 -0.8 -11.0 67 506 A F H X S+ 0 0 4 -4,-2.8 4,-2.9 1,-0.2 -1,-0.2 0.902 104.7 52.7 -56.7 -47.6 2.4 -2.1 -7.8 68 507 A G H X S+ 0 0 37 -4,-1.7 4,-2.3 1,-0.2 -1,-0.2 0.767 106.3 54.0 -64.0 -28.2 5.6 -3.8 -6.6 69 508 A I H X S+ 0 0 38 -4,-1.3 4,-2.2 -3,-0.4 -1,-0.2 0.946 110.3 46.1 -68.5 -49.4 7.6 -0.6 -7.1 70 509 A V H X S+ 0 0 0 -4,-1.9 4,-2.6 2,-0.2 -2,-0.2 0.934 111.1 53.6 -57.5 -47.6 5.1 1.2 -4.8 71 510 A I H X S+ 0 0 30 -4,-2.9 4,-3.5 2,-0.2 5,-0.3 0.951 106.8 50.9 -52.2 -56.0 5.3 -1.7 -2.3 72 511 A D H X S+ 0 0 67 -4,-2.3 4,-2.0 1,-0.2 -1,-0.2 0.925 113.4 45.8 -48.3 -49.8 9.1 -1.5 -2.1 73 512 A Y H <>S+ 0 0 71 -4,-2.2 5,-3.2 2,-0.2 -1,-0.2 0.848 113.1 49.9 -65.1 -32.0 8.9 2.2 -1.5 74 513 A K H ><5S+ 0 0 51 -4,-2.6 3,-1.7 -3,-0.2 -2,-0.2 0.929 110.4 49.8 -68.2 -47.1 6.1 1.7 1.1 75 514 A E H 3<5S+ 0 0 125 -4,-3.5 -2,-0.2 1,-0.3 -1,-0.2 0.853 110.5 50.6 -58.3 -36.2 8.1 -0.9 2.9 76 515 A R T 3<5S- 0 0 155 -4,-2.0 -1,-0.3 -5,-0.3 -2,-0.2 0.351 113.8-118.0 -85.4 5.3 11.1 1.4 2.9 77 516 A D T < 5S+ 0 0 142 -3,-1.7 -3,-0.2 -5,-0.1 -2,-0.1 0.871 75.9 129.8 59.7 42.5 9.0 4.2 4.4 78 517 A L < + 0 0 91 -5,-3.2 2,-0.4 -6,-0.1 -4,-0.2 0.009 33.8 96.1-121.9 23.3 9.7 6.3 1.3 79 518 A I S S- 0 0 11 -6,-0.2 -69,-0.1 -5,-0.2 4,-0.1 -0.969 86.1-104.0-109.5 133.2 6.2 7.5 0.4 80 519 A D > - 0 0 98 -2,-0.4 3,-1.7 -71,-0.4 4,-0.2 -0.204 21.3-123.9 -58.4 146.1 5.4 10.9 1.7 81 520 A R G > S+ 0 0 221 1,-0.3 3,-2.1 2,-0.2 -1,-0.1 0.780 107.1 72.7 -57.9 -29.7 3.1 11.0 4.7 82 521 A S G 3 S+ 0 0 64 1,-0.3 -1,-0.3 2,-0.2 -2,-0.1 0.444 86.9 65.0 -70.6 1.2 0.7 13.3 2.7 83 522 A A G < 0 0 1 -3,-1.7 -1,-0.3 1,-0.1 -2,-0.2 0.558 360.0 360.0 -93.6 -15.2 -0.2 10.2 0.6 84 523 A Y < 0 0 141 -3,-2.1 -2,-0.2 -4,-0.2 -1,-0.1 0.496 360.0 360.0 -94.7 360.0 -1.8 8.5 3.6