==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION REGULATOR 12-NOV-08 3F8C . COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, PADR-LIKE FAMILY; . SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. CREMORIS; . AUTHOR P.K.MADOORI,H.AGUSTIANDARI,A.J.M.DRIESSEN,A.-M.W.H.THUNNISSE . 103 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7850.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 78 75.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 7.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 58 56.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A E 0 0 243 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 35.3 4.3 -15.5 3.9 2 4 A I - 0 0 90 1,-0.0 5,-0.1 2,-0.0 0, 0.0 -0.830 360.0-108.5 -83.9 123.5 2.7 -12.8 1.7 3 5 A P >> - 0 0 54 0, 0.0 4,-1.8 0, 0.0 3,-1.1 -0.222 17.1-126.0 -55.0 140.0 -0.9 -13.8 1.1 4 6 A K H 3> S+ 0 0 148 1,-0.3 4,-2.0 2,-0.2 5,-0.1 0.827 112.7 55.8 -56.8 -33.4 -1.7 -15.0 -2.5 5 7 A E H 3> S+ 0 0 126 1,-0.2 4,-1.6 2,-0.2 -1,-0.3 0.777 104.9 52.0 -72.6 -25.8 -4.4 -12.3 -2.6 6 8 A M H <> S+ 0 0 94 -3,-1.1 4,-2.3 2,-0.2 -2,-0.2 0.861 108.8 49.6 -75.3 -37.7 -1.9 -9.6 -1.8 7 9 A L H X S+ 0 0 74 -4,-1.8 4,-2.5 2,-0.2 -2,-0.2 0.904 111.2 50.3 -64.4 -42.1 0.5 -10.7 -4.6 8 10 A R H X S+ 0 0 129 -4,-2.0 4,-2.3 2,-0.2 -2,-0.2 0.904 110.3 49.8 -58.3 -44.3 -2.5 -10.6 -6.9 9 11 A A H X S+ 0 0 46 -4,-1.6 4,-2.4 2,-0.2 -2,-0.2 0.893 110.2 50.0 -63.9 -41.2 -3.3 -7.1 -5.7 10 12 A Q H X S+ 0 0 88 -4,-2.3 4,-2.2 2,-0.2 -2,-0.2 0.912 110.1 50.1 -65.2 -43.2 0.3 -6.0 -6.3 11 13 A T H X S+ 0 0 31 -4,-2.5 4,-2.5 2,-0.2 -1,-0.2 0.906 111.1 49.9 -58.5 -46.4 0.2 -7.4 -9.8 12 14 A N H X S+ 0 0 43 -4,-2.3 4,-2.7 1,-0.2 -2,-0.2 0.914 110.0 50.0 -55.7 -49.1 -3.1 -5.6 -10.5 13 15 A V H X S+ 0 0 83 -4,-2.4 4,-1.5 2,-0.2 -2,-0.2 0.867 111.1 49.3 -62.0 -38.0 -1.7 -2.3 -9.2 14 16 A I H X S+ 0 0 70 -4,-2.2 4,-1.4 2,-0.2 -2,-0.2 0.961 112.8 46.2 -66.2 -50.5 1.4 -2.6 -11.3 15 17 A L H X S+ 0 0 0 -4,-2.5 4,-2.0 1,-0.2 3,-0.2 0.885 110.6 52.8 -58.2 -43.4 -0.6 -3.4 -14.5 16 18 A L H X S+ 0 0 20 -4,-2.7 4,-1.8 1,-0.2 -1,-0.2 0.835 108.1 52.9 -65.0 -30.5 -3.0 -0.5 -13.8 17 19 A N H X S+ 0 0 57 -4,-1.5 4,-1.3 2,-0.2 -1,-0.2 0.775 103.9 54.8 -75.2 -25.7 -0.0 1.8 -13.5 18 20 A V H >X S+ 0 0 11 -4,-1.4 4,-1.0 -3,-0.2 3,-0.5 0.962 111.8 44.8 -65.1 -48.9 1.3 0.6 -16.9 19 21 A L H 3< S+ 0 0 3 -4,-2.0 58,-0.4 1,-0.2 -2,-0.2 0.822 105.9 60.9 -61.6 -35.2 -2.1 1.6 -18.3 20 22 A K H 3< S+ 0 0 89 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.867 101.4 54.4 -60.3 -35.8 -2.1 4.9 -16.3 21 23 A Q H << S- 0 0 133 -4,-1.3 -1,-0.2 -3,-0.5 2,-0.2 0.796 132.2 -45.0 -69.7 -30.0 1.1 5.8 -18.3 22 24 A G < - 0 0 33 -4,-1.0 -1,-0.3 -3,-0.2 53,-0.1 -0.804 68.0 -72.4 168.4 154.0 -0.7 5.2 -21.6 23 25 A D + 0 0 64 -2,-0.2 2,-0.3 -3,-0.1 53,-0.2 -0.321 61.9 178.7 -57.2 142.4 -3.1 2.9 -23.5 24 26 A N B -A 75 0A 21 51,-1.9 51,-2.4 4,-0.0 2,-0.2 -0.991 28.8-124.0-155.2 153.1 -1.2 -0.2 -24.4 25 27 A Y > - 0 0 53 -2,-0.3 4,-2.5 49,-0.2 3,-0.2 -0.597 42.7 -95.9-101.6 167.7 -1.4 -3.6 -26.0 26 28 A V H > S+ 0 0 14 47,-0.5 4,-2.6 1,-0.3 5,-0.2 0.837 120.5 44.2 -56.7 -48.4 -0.5 -6.9 -24.4 27 29 A Y H > S+ 0 0 161 2,-0.2 4,-2.6 1,-0.2 -1,-0.3 0.893 113.9 52.5 -62.8 -42.4 3.1 -7.4 -25.6 28 30 A G H > S+ 0 0 7 -3,-0.2 4,-2.6 2,-0.2 -2,-0.2 0.933 111.8 45.6 -56.8 -46.7 3.9 -3.7 -24.8 29 31 A I H X S+ 0 0 0 -4,-2.5 4,-2.8 2,-0.2 5,-0.2 0.939 113.4 48.9 -65.0 -47.3 2.5 -4.1 -21.2 30 32 A I H X S+ 0 0 33 -4,-2.6 4,-2.1 2,-0.2 13,-0.2 0.906 113.2 47.3 -59.6 -45.7 4.4 -7.3 -20.6 31 33 A K H X S+ 0 0 93 -4,-2.6 4,-2.3 1,-0.2 -1,-0.2 0.931 112.7 49.7 -61.2 -46.3 7.6 -5.9 -21.9 32 34 A Q H X S+ 0 0 77 -4,-2.6 4,-2.5 1,-0.2 -2,-0.2 0.890 111.1 47.9 -62.1 -42.8 7.2 -2.7 -19.8 33 35 A V H X S+ 0 0 2 -4,-2.8 4,-1.8 2,-0.2 8,-0.3 0.901 111.3 52.1 -65.3 -38.0 6.5 -4.7 -16.6 34 36 A K H <>S+ 0 0 87 -4,-2.1 5,-3.6 -5,-0.2 7,-0.3 0.928 114.9 40.5 -65.0 -45.2 9.5 -7.0 -17.2 35 37 A E H ><5S+ 0 0 117 -4,-2.3 3,-2.2 3,-0.2 -2,-0.2 0.970 115.3 49.9 -66.9 -54.2 11.9 -4.0 -17.6 36 38 A A H 3<5S+ 0 0 84 -4,-2.5 -1,-0.2 1,-0.3 -2,-0.2 0.780 113.9 46.9 -54.8 -31.1 10.4 -1.9 -14.8 37 39 A S T ><5S- 0 0 20 -4,-1.8 3,-1.7 -5,-0.2 -1,-0.3 0.319 114.1-117.2 -94.2 6.8 10.6 -4.9 -12.4 38 40 A N T < 5S- 0 0 141 -3,-2.2 -3,-0.2 1,-0.3 -2,-0.1 0.857 74.3 -52.6 59.8 37.0 14.2 -5.7 -13.5 39 41 A G T 3 - 0 0 95 -2,-0.2 4,-1.8 1,-0.1 3,-0.4 -0.650 24.0-113.2 -91.7 157.6 2.5 -14.5 -19.8 45 47 A E H > S+ 0 0 105 -2,-0.2 4,-1.9 1,-0.2 5,-0.1 0.846 116.2 54.6 -53.4 -41.8 -0.2 -13.4 -22.2 46 48 A A H > S+ 0 0 62 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.883 104.9 54.4 -63.7 -38.5 -2.7 -15.8 -20.7 47 49 A T H > S+ 0 0 56 -3,-0.4 4,-2.4 1,-0.2 -1,-0.2 0.919 107.6 49.8 -61.1 -44.4 -2.2 -14.4 -17.2 48 50 A L H X S+ 0 0 0 -4,-1.8 4,-3.4 1,-0.2 5,-0.2 0.879 107.9 53.8 -61.5 -40.7 -2.9 -10.9 -18.4 49 51 A Y H X S+ 0 0 90 -4,-1.9 4,-2.4 2,-0.2 5,-0.2 0.936 108.5 48.7 -61.7 -44.4 -6.1 -12.1 -20.1 50 52 A T H X S+ 0 0 107 -4,-2.1 4,-1.4 1,-0.2 -2,-0.2 0.970 116.7 43.2 -57.2 -51.1 -7.4 -13.6 -16.9 51 53 A I H X S+ 0 0 28 -4,-2.4 4,-2.0 1,-0.2 -2,-0.2 0.914 116.4 46.3 -61.1 -46.3 -6.5 -10.4 -15.0 52 54 A F H X S+ 0 0 2 -4,-3.4 4,-2.5 2,-0.2 5,-0.2 0.782 104.8 60.1 -71.4 -31.3 -7.9 -8.0 -17.7 53 55 A K H X S+ 0 0 144 -4,-2.4 4,-2.4 -5,-0.2 -1,-0.2 0.923 111.1 42.1 -60.7 -43.2 -11.2 -10.0 -18.2 54 56 A R H X S+ 0 0 141 -4,-1.4 4,-1.9 -5,-0.2 -2,-0.2 0.910 114.1 50.3 -70.5 -42.7 -12.0 -9.4 -14.6 55 57 A L H <>S+ 0 0 11 -4,-2.0 5,-2.9 2,-0.2 6,-0.8 0.876 114.0 46.9 -64.5 -37.8 -10.8 -5.7 -14.6 56 58 A E H ><5S+ 0 0 79 -4,-2.5 3,-1.8 4,-0.2 -2,-0.2 0.918 108.7 52.3 -69.7 -44.9 -12.9 -5.1 -17.6 57 59 A K H 3<5S+ 0 0 122 -4,-2.4 -2,-0.2 1,-0.3 -1,-0.2 0.876 109.7 52.8 -55.2 -34.3 -16.0 -6.8 -16.1 58 60 A D T 3<5S- 0 0 62 -4,-1.9 -1,-0.3 -5,-0.1 -2,-0.2 0.437 116.6-116.9 -85.0 -0.5 -15.4 -4.5 -13.1 59 61 A G T < 5S+ 0 0 33 -3,-1.8 22,-0.4 2,-0.2 21,-0.2 0.672 83.7 117.6 78.5 18.1 -15.4 -1.4 -15.4 60 62 A I S - 0 0 19 -18,-2.6 4,-2.7 -2,-0.3 5,-0.1 -0.347 19.6-107.8 -80.2 171.7 -11.5 3.9 -17.7 79 83 A E H > S+ 0 0 157 2,-0.2 4,-2.1 1,-0.2 5,-0.1 0.904 127.0 47.8 -63.2 -42.0 -12.4 7.1 -16.0 80 84 A I H > S+ 0 0 106 -21,-0.2 4,-2.5 2,-0.2 5,-0.2 0.898 110.0 54.1 -60.7 -39.7 -13.9 5.0 -13.1 81 85 A G H > S+ 0 0 0 -22,-0.4 4,-2.1 1,-0.2 -2,-0.2 0.935 108.9 47.4 -60.0 -47.3 -10.6 3.0 -13.2 82 86 A H H X S+ 0 0 83 -4,-2.7 4,-2.2 1,-0.2 -1,-0.2 0.862 111.7 50.5 -59.1 -43.7 -8.6 6.3 -12.8 83 87 A E H X S+ 0 0 76 -4,-2.1 4,-2.9 2,-0.2 5,-0.2 0.924 108.8 50.4 -64.9 -45.5 -10.8 7.5 -9.9 84 88 A N H X S+ 0 0 77 -4,-2.5 4,-2.5 1,-0.2 5,-0.2 0.905 112.5 47.6 -57.9 -44.7 -10.5 4.2 -8.0 85 89 A M H X S+ 0 0 24 -4,-2.1 4,-2.8 -5,-0.2 -1,-0.2 0.893 111.4 51.3 -60.8 -43.0 -6.8 4.3 -8.3 86 90 A R H X S+ 0 0 109 -4,-2.2 4,-2.8 2,-0.2 -2,-0.2 0.945 113.2 43.9 -59.9 -48.0 -6.8 7.9 -7.2 87 91 A L H X S+ 0 0 87 -4,-2.9 4,-2.6 2,-0.2 5,-0.2 0.892 114.7 49.0 -66.4 -42.7 -8.9 7.1 -4.1 88 92 A A H X S+ 0 0 45 -4,-2.5 4,-2.3 -5,-0.2 -1,-0.2 0.922 115.0 45.5 -59.6 -45.9 -6.8 4.0 -3.3 89 93 A F H X S+ 0 0 135 -4,-2.8 4,-1.7 -5,-0.2 -2,-0.2 0.914 114.1 48.8 -64.2 -44.4 -3.6 6.0 -3.7 90 94 A E H X S+ 0 0 95 -4,-2.8 4,-1.7 -5,-0.2 -2,-0.2 0.912 113.2 46.0 -60.9 -46.9 -5.0 8.9 -1.7 91 95 A S H X S+ 0 0 65 -4,-2.6 4,-2.1 1,-0.2 -2,-0.2 0.923 112.6 49.2 -71.7 -38.4 -6.2 6.8 1.2 92 96 A W H X S+ 0 0 172 -4,-2.3 4,-2.0 1,-0.2 -1,-0.2 0.785 108.2 54.7 -70.1 -26.8 -3.0 4.7 1.4 93 97 A S H X S+ 0 0 25 -4,-1.7 4,-2.1 2,-0.2 -1,-0.2 0.877 107.9 49.9 -69.4 -38.9 -0.8 7.9 1.4 94 98 A R H X S+ 0 0 130 -4,-1.7 4,-2.8 2,-0.2 -2,-0.2 0.903 107.8 52.8 -63.5 -43.0 -2.9 9.1 4.4 95 99 A V H X S+ 0 0 58 -4,-2.1 4,-2.5 1,-0.2 -2,-0.2 0.944 109.7 50.0 -54.5 -46.6 -2.2 5.7 6.1 96 100 A D H X S+ 0 0 97 -4,-2.0 4,-2.6 1,-0.2 -2,-0.2 0.867 110.3 49.5 -57.1 -42.1 1.5 6.4 5.4 97 101 A K H X S+ 0 0 93 -4,-2.1 4,-2.4 2,-0.2 -1,-0.2 0.899 110.1 50.7 -66.4 -40.1 1.1 9.9 7.0 98 102 A I H X S+ 0 0 80 -4,-2.8 4,-2.0 2,-0.2 -2,-0.2 0.911 111.5 47.1 -66.2 -42.6 -0.6 8.5 10.0 99 103 A I H X S+ 0 0 70 -4,-2.5 4,-2.4 2,-0.2 -2,-0.2 0.957 109.0 54.8 -59.7 -52.2 2.2 5.8 10.5 100 104 A E H < S+ 0 0 127 -4,-2.6 3,-0.2 1,-0.2 -2,-0.2 0.934 108.6 49.4 -44.6 -50.7 4.8 8.5 10.1 101 105 A N H >< S+ 0 0 101 -4,-2.4 3,-1.4 1,-0.3 -1,-0.2 0.871 107.4 53.5 -58.2 -41.7 3.1 10.4 12.9 102 106 A L H 3< S+ 0 0 143 -4,-2.0 -1,-0.3 1,-0.3 -2,-0.2 0.868 107.6 52.6 -58.1 -37.9 3.1 7.3 15.0 103 107 A E T 3< 0 0 157 -4,-2.4 -1,-0.3 -3,-0.2 -2,-0.2 0.306 360.0 360.0 -84.5 8.9 6.8 7.1 14.4 104 108 A A < 0 0 119 -3,-1.4 -2,-0.2 -5,-0.2 -3,-0.1 0.717 360.0 360.0-106.8 360.0 7.4 10.8 15.6