==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 13-JUL-00 1FAV . COMPND 2 MOLECULE: HIV-1 ENVELOPE PROTEIN CHIMERA; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR G.ZHOU,M.FERRER,R.CHOPRA,T.STRASSMAIER,W.WEISSENHORN,J.J.SKE . 107 3 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9903.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 99 92.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 87 81.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A I > 0 0 165 0, 0.0 4,-1.6 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -34.3 16.5 14.9 -10.7 2 3 A E T 4 + 0 0 61 2,-0.2 3,-0.5 1,-0.2 4,-0.0 0.972 360.0 12.3 -63.0 -90.8 19.8 16.8 -10.7 3 4 A D T > S+ 0 0 153 1,-0.2 4,-1.3 2,-0.2 3,-0.4 0.523 121.0 77.1 -68.3 -0.9 19.7 19.4 -7.8 4 5 A K H >> S+ 0 0 100 1,-0.2 4,-1.1 2,-0.2 3,-0.8 0.981 96.2 40.4 -69.9 -58.1 16.6 17.4 -6.8 5 6 A I H 3X S+ 0 0 93 -4,-1.6 4,-0.9 -3,-0.5 -1,-0.2 0.278 108.6 69.5 -73.9 13.7 18.6 14.5 -5.2 6 7 A E H 3> S+ 0 0 31 -3,-0.4 4,-2.2 2,-0.2 -1,-0.2 0.804 92.9 51.5 -95.1 -44.4 20.8 17.3 -4.0 7 8 A E H X S+ 0 0 86 -4,-2.6 4,-3.0 -5,-0.3 3,-0.5 0.966 105.4 47.9 -57.4 -59.2 20.4 14.6 9.8 16 17 A E H 3< S+ 0 0 125 -4,-2.9 4,-0.5 1,-0.3 -1,-0.2 0.852 112.7 53.0 -52.3 -34.2 23.6 12.6 10.4 17 18 A N H 3X S+ 0 0 58 -4,-2.1 4,-1.6 -5,-0.2 3,-0.3 0.885 109.3 46.8 -68.3 -39.5 24.8 15.7 12.2 18 19 A E H X S+ 0 0 64 -4,-1.6 4,-2.9 1,-0.3 3,-2.1 0.858 112.8 58.1 -62.3 -39.4 25.2 15.2 19.0 22 23 A I H 3X S+ 0 0 98 -4,-1.8 4,-1.6 1,-0.3 -1,-0.3 0.850 102.3 56.1 -60.0 -33.0 22.2 13.3 20.3 23 24 A K H 3< S+ 0 0 157 -4,-0.6 -1,-0.3 -3,-0.4 -2,-0.2 0.507 113.5 42.2 -76.5 -1.1 24.5 10.3 20.4 24 25 A K H <> S+ 0 0 157 -3,-2.1 4,-2.5 2,-0.1 -2,-0.2 0.727 109.6 52.4-110.1 -38.6 26.7 12.5 22.6 25 26 A L H X S+ 0 0 103 -4,-2.9 4,-3.0 1,-0.3 -2,-0.2 0.822 108.9 53.3 -67.2 -32.5 24.1 14.1 24.9 26 27 A I H < S+ 0 0 107 -4,-1.6 -1,-0.3 -5,-0.3 -3,-0.1 0.697 106.6 54.1 -74.7 -18.1 22.9 10.6 25.6 27 28 A G H >> S+ 0 0 36 -3,-0.2 3,-1.6 -5,-0.1 4,-0.9 0.962 112.2 41.9 -75.6 -53.9 26.5 9.9 26.5 28 29 A E H >X S+ 0 0 131 -4,-2.5 4,-1.7 1,-0.3 3,-1.1 0.932 113.3 52.7 -55.4 -51.5 26.6 12.8 29.0 29 30 A A H 3< S+ 0 0 46 -4,-3.0 -1,-0.3 1,-0.2 -2,-0.1 0.188 106.4 57.7 -73.9 20.4 23.1 12.0 30.3 30 31 A R H <> S+ 0 0 95 -3,-1.6 4,-0.7 3,-0.1 -1,-0.2 0.560 103.9 45.4-122.2 -22.6 24.2 8.5 31.0 31 32 A Q H S+ 0 0 87 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.881 114.0 52.8 -54.5 -36.2 22.2 9.1 35.4 34 35 A S H >X S+ 0 0 44 -4,-0.7 4,-1.2 1,-0.2 3,-0.6 0.969 110.1 43.8 -63.3 -56.8 24.9 6.7 36.5 35 36 A G H 3X S+ 0 0 40 -4,-3.4 4,-1.9 1,-0.2 -2,-0.2 0.772 108.0 60.8 -59.9 -28.7 26.2 8.9 39.2 36 37 A I H 3X S+ 0 0 86 -4,-2.8 4,-1.9 1,-0.2 -1,-0.2 0.885 105.1 48.8 -65.9 -37.8 22.7 9.7 40.3 37 38 A V H S+ 0 0 93 -4,-0.4 4,-3.3 -5,-0.2 -1,-0.2 0.831 103.9 50.8 -91.1 -37.7 20.5 3.1 70.1 57 58 A T H X S+ 0 0 66 -4,-1.1 4,-3.4 2,-0.2 5,-0.3 0.949 110.0 52.1 -64.8 -45.3 19.5 6.5 71.6 58 59 A V H X S+ 0 0 57 -4,-1.9 4,-1.5 2,-0.2 -1,-0.2 0.882 111.7 48.5 -55.5 -38.4 15.9 5.2 72.0 59 60 A W H X S+ 0 0 151 -4,-0.5 4,-1.7 -5,-0.2 3,-0.4 0.970 112.3 46.4 -66.6 -53.9 17.5 2.2 73.8 60 61 A G H X S+ 0 0 36 -4,-3.3 4,-1.7 1,-0.3 -2,-0.2 0.867 112.5 50.8 -56.7 -38.2 19.7 4.4 76.0 61 62 A I H X S+ 0 0 90 -4,-3.4 4,-2.3 -5,-0.2 -1,-0.3 0.839 105.6 57.6 -70.2 -29.7 16.7 6.6 76.8 62 63 A K H X S+ 0 0 116 -4,-1.5 4,-0.8 -3,-0.4 -2,-0.2 0.879 109.7 43.0 -68.5 -37.3 14.7 3.5 77.7 63 64 A Q H X S+ 0 0 135 -4,-1.7 4,-3.1 2,-0.2 -1,-0.2 0.815 109.5 57.1 -78.9 -31.1 17.1 2.4 80.4 64 65 A L H X S+ 0 0 94 -4,-1.7 4,-3.0 -5,-0.2 5,-0.3 0.984 102.0 55.9 -60.6 -53.4 17.5 5.9 81.7 65 66 A Q H X S+ 0 0 101 -4,-2.3 4,-1.5 1,-0.2 -1,-0.2 0.798 112.7 43.4 -43.7 -37.3 13.7 6.0 82.2 66 67 A A H X S+ 0 0 59 -4,-0.8 4,-2.0 2,-0.2 5,-0.3 0.921 110.7 53.0 -76.2 -49.3 14.2 2.9 84.4 67 68 A R H X S+ 0 0 169 -4,-3.1 4,-1.1 1,-0.2 -2,-0.2 0.910 114.5 43.4 -51.1 -46.4 17.3 4.1 86.2 68 69 A I H X S+ 0 0 82 -4,-3.0 4,-2.4 1,-0.2 -1,-0.2 0.867 110.8 52.3 -70.8 -40.4 15.5 7.3 87.2 69 70 A L H X S+ 0 0 65 -4,-1.5 4,-2.1 -5,-0.3 -1,-0.2 0.805 107.9 52.5 -70.1 -27.3 12.2 5.7 88.2 70 71 A A H X S+ 0 0 53 -4,-2.0 4,-1.9 2,-0.2 -1,-0.2 0.824 110.0 48.6 -74.9 -33.8 14.0 3.3 90.5 71 72 A V H X S+ 0 0 82 -4,-1.1 4,-2.0 -5,-0.3 -2,-0.2 0.921 113.0 48.7 -70.2 -42.1 15.7 6.2 92.1 72 73 A E H X S+ 0 0 83 -4,-2.4 4,-0.6 2,-0.2 -2,-0.2 0.869 111.2 48.2 -65.6 -41.8 12.4 8.0 92.5 73 74 A R H >X S+ 0 0 129 -4,-2.1 3,-2.7 1,-0.2 4,-1.1 0.993 110.0 53.0 -59.9 -60.1 10.5 5.0 94.0 74 75 A Y H >X S+ 0 0 145 -4,-1.9 4,-1.4 1,-0.3 3,-0.8 0.835 107.3 51.2 -40.1 -49.5 13.3 4.4 96.5 75 76 A L H 3< S+ 0 0 113 -4,-2.0 -1,-0.3 1,-0.3 -2,-0.2 0.634 107.1 54.3 -68.4 -15.9 13.2 8.0 97.7 76 77 A K H << S+ 0 0 157 -3,-2.7 -1,-0.3 -4,-0.6 -2,-0.2 0.625 106.4 51.5 -90.6 -17.5 9.4 7.6 98.2 77 78 A D H << 0 0 130 -4,-1.1 -2,-0.2 -3,-0.8 -3,-0.1 0.777 360.0 360.0 -84.5 -28.7 10.0 4.6 100.3 78 79 A Q < 0 0 200 -4,-1.4 -3,-0.1 -5,-0.2 -4,-0.1 -0.532 360.0 360.0 140.7 360.0 12.5 6.6 102.4 79 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 80 123 C X 0 0 231 0, 0.0 4,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 6.6 6.4 71.1 81 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 82 125 C N 0 0 115 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 127.8 5.3 -1.4 66.2 83 126 C N > - 0 0 92 3,-0.1 4,-0.6 4,-0.0 0, 0.0 0.801 360.0 -11.3 -97.3 -95.7 5.1 2.3 65.2 84 127 C Y H > S+ 0 0 147 1,-0.2 4,-1.4 2,-0.2 5,-0.1 0.841 128.4 57.6 -81.9 -28.2 7.9 4.2 63.5 85 128 C T H > S+ 0 0 47 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.865 107.3 46.0 -69.7 -35.8 10.7 1.8 63.8 86 129 C S H > S+ 0 0 72 1,-0.2 4,-0.7 2,-0.2 -1,-0.2 0.705 110.5 56.5 -78.5 -16.7 8.9 -1.1 62.1 87 130 C L H X S+ 0 0 91 -4,-0.6 4,-2.3 2,-0.2 -2,-0.2 0.777 106.7 49.6 -80.5 -28.1 7.9 1.4 59.4 88 131 C I H X S+ 0 0 37 -4,-1.4 4,-3.6 2,-0.2 5,-0.3 0.921 105.1 53.3 -77.3 -43.9 11.5 2.3 58.8 89 132 C H H X S+ 0 0 105 -4,-1.7 4,-2.0 1,-0.2 5,-0.2 0.864 112.5 51.0 -57.5 -33.1 12.9 -1.3 58.4 90 133 C S H X S+ 0 0 50 -4,-0.7 4,-3.1 2,-0.2 5,-0.3 0.982 111.1 43.7 -66.7 -58.5 10.1 -1.5 55.9 91 134 C L H X S+ 0 0 80 -4,-2.3 4,-2.0 1,-0.2 -2,-0.2 0.892 117.4 46.6 -55.0 -43.6 11.1 1.6 54.0 92 135 C I H < S+ 0 0 15 -4,-3.6 -1,-0.2 2,-0.2 -2,-0.2 0.832 113.5 47.4 -70.1 -34.4 14.8 0.7 54.1 93 136 C E H >X S+ 0 0 123 -4,-2.0 3,-2.3 -5,-0.3 4,-1.6 0.972 117.2 43.3 -66.5 -55.5 14.2 -2.9 53.1 94 137 C E H 3X S+ 0 0 105 -4,-3.1 4,-1.3 1,-0.3 -2,-0.2 0.820 112.2 55.6 -57.7 -33.1 12.0 -1.7 50.3 95 138 C S H 3< S+ 0 0 42 -4,-2.0 -1,-0.3 -5,-0.3 -2,-0.2 0.211 104.0 56.4 -85.9 14.5 14.6 1.0 49.6 96 139 C Q H <> S+ 0 0 93 -3,-2.3 4,-1.8 3,-0.1 -2,-0.2 0.748 102.5 49.3-110.0 -43.3 17.2 -1.7 49.2 97 140 C N H X S+ 0 0 82 -4,-1.6 4,-2.4 2,-0.2 -2,-0.2 0.943 111.3 50.6 -61.7 -48.8 15.7 -3.8 46.5 98 141 C Q H X S+ 0 0 98 -4,-1.3 4,-3.6 1,-0.3 5,-0.3 0.926 111.3 47.1 -55.6 -49.3 15.0 -0.7 44.3 99 142 C Q H > S+ 0 0 12 1,-0.2 4,-1.0 2,-0.2 -1,-0.3 0.838 113.3 50.8 -61.7 -30.9 18.6 0.5 44.7 100 143 C E H X S+ 0 0 124 -4,-1.8 4,-0.7 2,-0.2 -2,-0.2 0.826 116.6 40.7 -72.3 -34.7 19.6 -3.1 43.9 101 144 C K H >X S+ 0 0 123 -4,-2.4 4,-2.1 2,-0.2 3,-0.6 0.933 107.1 58.9 -78.8 -51.9 17.4 -3.0 40.8 102 145 C N H 3X S+ 0 0 51 -4,-3.6 4,-1.8 1,-0.3 -3,-0.2 0.792 107.4 49.9 -48.6 -36.1 18.1 0.5 39.5 103 146 C E H 3X S+ 0 0 83 -4,-1.0 4,-1.5 -5,-0.3 -1,-0.3 0.859 106.2 55.2 -74.4 -36.9 21.8 -0.4 39.2 104 147 C Q H XX S+ 0 0 114 -4,-0.7 4,-2.0 -3,-0.6 3,-1.3 0.993 112.3 42.2 -56.6 -63.6 21.0 -3.6 37.3 105 148 C E H 3< S+ 0 0 105 -4,-2.1 -1,-0.2 1,-0.3 -2,-0.2 0.856 108.0 60.4 -50.2 -43.9 19.1 -1.7 34.7 106 149 C L H 3< S+ 0 0 23 -4,-1.8 3,-0.4 -5,-0.3 -1,-0.3 0.826 107.2 47.2 -56.0 -33.5 21.7 1.1 34.6 107 150 C L H << S+ 0 0 64 -4,-1.5 2,-3.1 -3,-1.3 -1,-0.2 0.926 101.1 63.5 -73.4 -47.3 24.2 -1.5 33.6 108 151 C E < 0 0 150 -4,-2.0 -1,-0.2 -5,-0.1 -2,-0.1 -0.135 360.0 360.0 -73.0 49.4 21.9 -3.0 30.9 109 152 C L 0 0 120 -2,-3.1 -79,-0.0 -3,-0.4 -3,-0.0 -0.958 360.0 360.0-125.4 360.0 22.2 0.5 29.3