==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 08-DEC-05 2FB7 . COMPND 2 MOLECULE: SM-LIKE PROTEIN, LSM-14_N (RAP55); . SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; . AUTHOR R.C.TYLER,J.SONG,J.L.MARKLEY,CENTER FOR EUKARYOTIC . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6848.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 60.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 32.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 16 20.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 16 A P 0 0 76 0, 0.0 39,-0.1 0, 0.0 53,-0.1 0.000 360.0 360.0 360.0 167.2 -9.9 -0.2 2.8 2 17 A Y + 0 0 177 1,-0.1 2,-1.1 37,-0.1 49,-0.0 -0.077 360.0 124.5 59.6-148.8 -7.8 2.8 4.1 3 18 A I S S- 0 0 109 49,-0.1 2,-0.2 3,-0.0 -1,-0.1 -0.667 77.5 -15.3 94.5 -75.6 -5.0 2.6 6.7 4 19 A G S S- 0 0 20 -2,-1.1 2,-0.5 30,-0.0 18,-0.1 -0.581 90.9 -48.0-141.0-159.6 -1.9 4.1 5.1 5 20 A S E -A 21 0A 11 16,-1.4 16,-2.9 -2,-0.2 2,-0.5 -0.737 52.8-133.6 -88.3 123.7 -0.3 5.2 1.9 6 21 A K E +A 20 0A 33 -2,-0.5 67,-1.7 14,-0.2 68,-0.6 -0.643 41.4 152.4 -82.3 121.3 -0.6 2.6 -0.9 7 22 A I E -AB 19 72A 15 12,-2.4 12,-1.9 -2,-0.5 2,-0.5 -0.905 40.8-127.6-140.6 167.8 2.6 2.0 -2.7 8 23 A S E -AB 18 71A 23 63,-3.0 63,-2.5 -2,-0.3 2,-0.5 -0.992 24.6-168.6-123.8 124.5 4.4 -0.6 -4.5 9 24 A L E -AB 17 70A 1 8,-2.2 8,-1.6 -2,-0.5 2,-0.6 -0.939 10.0-154.0-116.4 130.7 7.9 -1.5 -3.5 10 25 A I E -AB 16 69A 28 59,-2.7 58,-2.9 -2,-0.5 59,-1.3 -0.942 16.9-145.4-105.5 119.9 10.3 -3.6 -5.4 11 26 A S E >> -AB 15 67A 4 4,-2.5 3,-2.6 -2,-0.6 4,-0.7 -0.267 37.4 -85.6 -78.2 169.6 13.0 -5.3 -3.2 12 27 A K T 34 S+ 0 0 108 54,-1.3 55,-0.1 1,-0.3 -1,-0.1 0.676 127.5 60.8 -49.1 -26.0 16.6 -6.0 -4.3 13 28 A A T 34 S- 0 0 67 53,-0.1 -1,-0.3 2,-0.1 3,-0.1 0.296 122.1-106.9 -88.2 10.9 15.5 -9.3 -6.0 14 29 A E T <4 S+ 0 0 147 -3,-2.6 2,-0.5 1,-0.2 -2,-0.2 0.819 71.3 150.5 64.0 40.0 13.3 -7.3 -8.3 15 30 A I E < -A 11 0A 80 -4,-0.7 -4,-2.5 2,-0.0 2,-0.3 -0.872 37.5-140.9-106.1 127.1 10.2 -8.5 -6.4 16 31 A R E +A 10 0A 174 -2,-0.5 2,-0.3 -6,-0.2 -6,-0.2 -0.629 20.3 178.4 -89.8 142.7 7.1 -6.2 -6.2 17 32 A Y E -A 9 0A 84 -8,-1.6 -8,-2.2 -2,-0.3 2,-0.4 -0.988 15.5-149.9-138.3 143.8 4.9 -5.8 -3.1 18 33 A E E +A 8 0A 62 -2,-0.3 19,-0.3 -10,-0.2 2,-0.3 -0.967 38.8 118.9-115.5 134.5 1.9 -3.7 -2.5 19 34 A G E -A 7 0A 2 -12,-1.9 -12,-2.4 -2,-0.4 2,-0.7 -0.917 62.6 -71.6-166.0-169.4 1.1 -2.3 0.9 20 35 A I E -AC 6 34A 9 15,-1.1 14,-0.9 14,-0.6 -14,-0.2 -0.919 42.9-133.3-113.0 108.7 0.5 0.6 3.0 21 36 A L E +AC 5 33A 34 -16,-2.9 -16,-1.4 -2,-0.7 12,-0.2 -0.336 25.2 175.9 -55.3 135.6 3.6 2.6 3.9 22 37 A Y E - 0 0 183 10,-1.6 2,-0.3 1,-0.4 11,-0.2 0.748 60.1 -10.0-113.0 -48.1 3.9 3.6 7.5 23 38 A T E - C 0 32A 65 9,-1.7 9,-2.9 2,-0.0 -1,-0.4 -0.989 50.4-154.8-154.1 153.1 7.3 5.4 8.0 24 39 A I E - C 0 31A 82 -2,-0.3 2,-1.2 7,-0.2 7,-0.2 -0.990 14.2-143.5-134.4 126.4 10.5 6.1 6.0 25 40 A D E >>> - C 0 30A 80 5,-2.9 4,-1.4 -2,-0.4 5,-1.0 -0.761 14.7-167.5 -89.5 95.8 13.9 6.7 7.7 26 41 A T T 345S+ 0 0 122 -2,-1.2 -1,-0.2 1,-0.2 5,-0.0 0.778 79.1 64.7 -56.1 -29.0 15.3 9.3 5.2 27 42 A E T 345S+ 0 0 179 1,-0.2 -1,-0.2 -3,-0.1 -2,-0.0 0.891 121.3 18.9 -66.2 -39.9 18.8 9.0 6.7 28 43 A N T <45S- 0 0 94 -3,-0.9 37,-0.4 2,-0.1 -1,-0.2 0.395 102.9-123.7-109.8 0.5 19.3 5.4 5.7 29 44 A S T <5 + 0 0 71 -4,-1.4 -3,-0.2 1,-0.2 2,-0.2 0.594 56.6 160.8 65.2 16.4 16.6 5.5 3.1 30 45 A T E < -C 25 0A 13 -5,-1.0 -5,-2.9 33,-0.1 2,-0.5 -0.425 32.4-142.4 -75.8 135.6 15.1 2.6 5.0 31 46 A V E -CD 24 62A 3 31,-0.9 31,-2.7 -7,-0.2 2,-0.8 -0.869 4.7-153.6-104.5 125.7 11.4 1.8 4.4 32 47 A A E -CD 23 61A 15 -9,-2.9 -9,-1.7 -2,-0.5 -10,-1.6 -0.865 18.5-171.6-101.3 106.4 9.2 0.7 7.3 33 48 A L E -CD 21 60A 7 27,-1.9 27,-0.6 -2,-0.8 2,-0.4 -0.752 10.0-179.7-100.2 150.2 6.3 -1.3 6.0 34 49 A A E +C 20 0A 21 -14,-0.9 -14,-0.6 -2,-0.3 3,-0.2 -0.982 67.9 4.6-147.8 134.4 3.4 -2.5 7.9 35 50 A K S S- 0 0 24 -2,-0.4 -15,-1.1 1,-0.2 2,-0.8 0.959 71.1-172.7 49.7 58.6 0.6 -4.5 6.6 36 51 A V + 0 0 16 -17,-0.3 -17,-0.3 -3,-0.1 2,-0.3 -0.821 33.0 119.4 -77.4 113.9 1.9 -5.0 3.2 37 52 A R - 0 0 140 -2,-0.8 -3,-0.0 -19,-0.3 -20,-0.0 -0.932 68.4 -79.7-169.5 157.2 -1.0 -6.7 1.4 38 53 A S - 0 0 69 -2,-0.3 2,-0.5 1,-0.1 -18,-0.1 -0.212 41.9-142.1 -61.4 156.3 -3.3 -6.1 -1.6 39 54 A F + 0 0 111 1,-0.1 -37,-0.1 -20,-0.1 3,-0.1 -0.840 59.9 55.1-132.5 95.1 -6.2 -3.7 -1.0 40 55 A G S S- 0 0 61 -2,-0.5 -1,-0.1 1,-0.1 -2,-0.0 0.152 93.7 -3.3 142.4 101.3 -9.6 -4.3 -2.6 41 56 A T - 0 0 91 -3,-0.1 -1,-0.1 9,-0.1 -3,-0.0 0.628 61.2-132.9 69.3 133.2 -12.0 -7.3 -2.5 42 57 A E - 0 0 66 2,-0.7 -3,-0.0 -3,-0.1 8,-0.0 0.215 62.0 -49.7 -86.6-149.5 -11.2 -10.5 -0.8 43 58 A D S S+ 0 0 159 2,-0.1 -2,-0.0 3,-0.0 -1,-0.0 0.394 134.4 56.9 -70.7 4.0 -11.7 -14.1 -2.2 44 59 A R S S- 0 0 146 4,-0.1 2,-1.8 0, 0.0 -2,-0.7 -0.953 101.4-111.1-131.8 149.8 -15.1 -12.7 -3.0 45 60 A P S S- 0 0 98 0, 0.0 -2,-0.1 0, 0.0 -4,-0.1 -0.075 80.7 -74.6 -75.8 44.7 -16.0 -9.6 -5.1 46 61 A T + 0 0 51 -2,-1.8 -3,-0.0 2,-0.1 -5,-0.0 1.000 65.8 172.7 51.7 75.4 -17.1 -8.0 -1.8 47 62 A D S S+ 0 0 115 1,-0.4 -1,-0.1 2,-0.0 0, 0.0 0.501 89.3 29.6 -79.4 -5.4 -20.4 -9.9 -1.2 48 63 A R S S- 0 0 134 -4,-0.1 -1,-0.4 0, 0.0 -2,-0.1 -0.836 105.8-118.2-157.6 94.6 -20.1 -8.1 2.0 49 64 A P - 0 0 115 0, 0.0 2,-0.3 0, 0.0 -3,-0.0 -0.228 31.3-126.2 -45.5 126.6 -18.2 -4.8 1.8 50 65 A I - 0 0 77 1,-0.0 -9,-0.1 2,-0.0 0, 0.0 -0.577 18.7-155.4 -88.1 137.2 -15.1 -4.9 3.9 51 66 A A - 0 0 60 -2,-0.3 2,-1.5 2,-0.1 -49,-0.0 -0.723 43.6 -76.4-103.1 155.8 -14.4 -2.3 6.4 52 67 A P S S+ 0 0 65 0, 0.0 2,-0.3 0, 0.0 -49,-0.1 -0.385 78.8 131.7 -58.6 86.2 -10.9 -1.4 7.8 53 68 A R + 0 0 220 -2,-1.5 2,-0.3 2,-0.0 -2,-0.1 -0.791 28.3 134.3-136.6 90.7 -10.3 -4.3 10.0 54 69 A D - 0 0 85 -2,-0.3 2,-0.3 -53,-0.1 -51,-0.0 -0.988 37.5-148.8-144.7 146.0 -6.9 -5.5 9.2 55 70 A E - 0 0 166 -2,-0.3 2,-0.8 0, 0.0 -2,-0.0 -0.861 21.1-114.2-124.2 156.5 -3.9 -6.6 11.3 56 71 A T + 0 0 67 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 -0.767 58.6 125.0-100.5 105.6 -0.2 -6.5 10.7 57 72 A F S S+ 0 0 177 -2,-0.8 -1,-0.2 -21,-0.1 0, 0.0 0.633 73.3 53.4-120.0 -38.0 1.6 -9.8 10.4 58 73 A E S S+ 0 0 99 -22,-0.1 -2,-0.1 2,-0.0 -25,-0.1 0.439 79.9 134.2 -80.8 -4.8 3.4 -9.6 7.0 59 74 A Y + 0 0 136 -27,-0.0 2,-0.3 1,-0.0 -25,-0.2 -0.040 27.5 172.0 -49.5 150.6 5.1 -6.3 7.9 60 75 A I E -D 33 0A 79 -27,-0.6 -27,-1.9 2,-0.0 2,-0.5 -0.982 28.7-132.7-163.0 147.2 8.9 -5.9 7.2 61 76 A I E -D 32 0A 103 -2,-0.3 2,-0.3 -29,-0.2 -29,-0.2 -0.929 24.9-149.2-107.5 129.7 11.5 -3.1 7.2 62 77 A F E -D 31 0A 19 -31,-2.7 -31,-0.9 -2,-0.5 5,-0.1 -0.762 22.3-122.3-103.7 148.1 13.8 -2.8 4.3 63 78 A R - 0 0 184 -2,-0.3 2,-2.4 -33,-0.2 -33,-0.1 0.552 37.6-143.7 -59.7 -13.7 17.4 -1.7 4.2 64 79 A G S > S+ 0 0 10 1,-0.2 3,-1.6 -33,-0.1 -1,-0.2 -0.317 94.0 69.0 82.1 -58.7 16.4 1.0 1.7 65 80 A S T 3 S+ 0 0 114 -2,-2.4 -1,-0.2 -37,-0.4 -36,-0.1 0.612 93.2 63.7 -66.0 -11.5 19.5 0.8 -0.3 66 81 A D T 3 S+ 0 0 52 -53,-0.0 -54,-1.3 2,-0.0 2,-0.5 0.049 78.7 112.0 -98.1 20.8 18.1 -2.6 -1.3 67 82 A I E < -B 11 0A 32 -3,-1.6 -56,-0.2 -56,-0.2 3,-0.1 -0.857 45.0-172.3-101.1 132.4 15.1 -1.1 -3.1 68 83 A K E S+ 0 0 122 -58,-2.9 2,-0.3 -2,-0.5 -57,-0.2 0.745 74.0 0.4 -87.4 -28.5 14.9 -1.4 -6.8 69 84 A D E -B 10 0A 76 -59,-1.3 -59,-2.7 2,-0.0 2,-0.5 -0.928 50.5-162.4-166.3 135.1 11.8 0.8 -7.2 70 85 A L E +B 9 0A 92 -2,-0.3 2,-0.6 -61,-0.2 -61,-0.2 -0.900 17.1 175.6-122.3 100.4 9.5 2.9 -5.0 71 86 A T E -B 8 0A 77 -63,-2.5 -63,-3.0 -2,-0.5 2,-0.2 -0.924 11.4-162.6-110.0 116.7 6.3 3.8 -6.8 72 87 A V E -B 7 0A 95 -2,-0.6 -65,-0.2 -65,-0.2 -2,-0.0 -0.615 16.3-167.6 -95.8 154.3 3.7 5.7 -4.7 73 88 A C S S+ 0 0 98 -67,-1.7 -66,-0.1 1,-0.3 -1,-0.1 0.700 78.0 28.1-109.2 -32.8 -0.0 6.1 -5.4 74 89 A E - 0 0 81 -68,-0.6 -1,-0.3 0, 0.0 0, 0.0 -0.951 69.1-143.5-138.6 116.1 -1.0 8.8 -2.9 75 90 A P - 0 0 95 0, 0.0 -3,-0.0 0, 0.0 0, 0.0 -0.680 8.5-163.8 -77.7 112.2 1.3 11.5 -1.5 76 91 A P S S+ 0 0 106 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.869 83.6 29.2 -63.0 -39.1 0.3 12.2 2.2 77 92 A K + 0 0 162 1,-0.1 3,-0.0 0, 0.0 0, 0.0 -0.914 59.2 179.1-129.8 101.2 2.2 15.5 2.4 78 93 A P S S+ 0 0 119 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 0.780 81.8 53.7 -67.6 -28.4 2.4 17.5 -0.9 79 94 A I 0 0 151 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.951 360.0 360.0-111.3 122.3 4.3 20.2 1.0 80 95 A M 0 0 234 -2,-0.5 -1,-0.1 -3,-0.0 0, 0.0 0.707 360.0 360.0-115.1 360.0 7.3 19.0 2.9