==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 12-DEC-05 2FC8 . COMPND 2 MOLECULE: NCL PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7524.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 52.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 19.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 115 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -40.4 19.1 -4.7 20.4 2 2 A S + 0 0 137 1,-0.0 2,-0.4 2,-0.0 0, 0.0 -0.126 360.0 158.3 -41.5 103.7 18.1 -8.2 19.3 3 3 A S + 0 0 118 2,-0.0 2,-0.2 -2,-0.0 -1,-0.0 -0.997 4.9 114.3-139.7 132.8 16.7 -7.5 15.9 4 4 A G - 0 0 82 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 -0.664 26.5-171.4 167.3 135.5 16.2 -9.7 12.9 5 5 A S - 0 0 89 -2,-0.2 2,-0.4 2,-0.0 -2,-0.0 -0.871 11.5-143.1-134.8 167.4 13.5 -11.3 10.7 6 6 A S > - 0 0 102 -2,-0.3 3,-0.6 0, 0.0 -2,-0.0 -0.994 57.9 -20.4-136.3 140.6 13.1 -13.9 7.9 7 7 A G T 3 S- 0 0 56 -2,-0.4 6,-0.0 1,-0.2 -2,-0.0 -0.131 112.3 -37.5 61.8-160.7 10.9 -14.0 4.9 8 8 A P T 3 S- 0 0 45 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 0.702 74.8-129.5 -69.8 -20.0 7.6 -12.0 4.7 9 9 A N S < S+ 0 0 120 -3,-0.6 2,-0.3 1,-0.3 -2,-0.1 0.835 71.9 100.5 72.7 33.7 7.0 -12.6 8.4 10 10 A A S S- 0 0 70 1,-0.1 -1,-0.3 2,-0.1 3,-0.0 -0.889 83.9-107.9-141.6 171.3 3.5 -13.8 7.7 11 11 A R S S+ 0 0 212 -2,-0.3 2,-0.2 -3,-0.1 -1,-0.1 0.949 102.7 29.5 -66.5 -50.6 1.4 -17.0 7.4 12 12 A S S S- 0 0 49 1,-0.2 -2,-0.1 -4,-0.1 0, 0.0 -0.637 104.3 -74.2-108.1 167.2 1.0 -16.7 3.6 13 13 A Q - 0 0 131 -2,-0.2 -1,-0.2 1,-0.1 -2,-0.1 -0.172 55.6-106.1 -57.8 150.8 3.1 -15.1 0.9 14 14 A P - 0 0 26 0, 0.0 2,-0.3 0, 0.0 50,-0.1 -0.016 34.0-103.3 -69.8 179.1 3.2 -11.3 0.7 15 15 A S - 0 0 33 49,-0.1 53,-0.1 1,-0.1 48,-0.1 -0.755 6.9-141.7-108.5 155.7 1.5 -9.1 -1.9 16 16 A K S S+ 0 0 111 -2,-0.3 2,-0.5 73,-0.1 45,-0.4 0.806 88.4 64.3 -82.5 -32.3 3.0 -7.3 -5.0 17 17 A T S S- 0 0 37 43,-0.2 72,-1.4 72,-0.2 2,-0.5 -0.819 76.1-146.0 -98.3 129.7 0.8 -4.2 -4.6 18 18 A L E -AB 59 88A 0 41,-1.8 41,-1.7 -2,-0.5 2,-0.6 -0.811 12.3-133.5 -97.3 129.8 1.2 -2.1 -1.4 19 19 A F E -AB 58 87A 51 68,-3.2 68,-2.0 -2,-0.5 2,-0.6 -0.712 19.4-164.1 -84.9 119.0 -1.9 -0.4 -0.0 20 20 A V E +AB 57 86A 0 37,-1.4 37,-2.2 -2,-0.6 2,-0.4 -0.903 12.8 173.4-108.5 112.7 -1.3 3.3 0.8 21 21 A K E +AB 56 85A 96 64,-1.8 64,-3.1 -2,-0.6 35,-0.2 -0.944 50.8 51.8-120.6 139.8 -3.9 4.9 3.1 22 22 A G + 0 0 35 33,-1.7 34,-0.2 -2,-0.4 57,-0.2 0.744 69.4 145.8 108.5 36.1 -3.7 8.4 4.6 23 23 A L - 0 0 16 32,-3.1 2,-0.4 -3,-0.2 -1,-0.1 -0.390 50.2 -97.0 -96.2 176.5 -3.1 10.6 1.6 24 24 A S > - 0 0 40 -2,-0.1 3,-1.3 1,-0.1 31,-0.2 -0.768 28.9-116.2 -98.6 140.7 -4.2 14.2 0.9 25 25 A E T 3 S+ 0 0 97 -2,-0.4 28,-0.6 1,-0.3 30,-0.1 0.734 123.5 46.0 -43.0 -23.2 -7.2 14.9 -1.3 26 26 A D T 3 S+ 0 0 134 26,-0.1 -1,-0.3 54,-0.1 54,-0.1 0.780 81.4 119.2 -91.0 -32.5 -4.6 16.5 -3.5 27 27 A T < - 0 0 2 -3,-1.3 2,-0.2 26,-0.1 28,-0.1 -0.076 52.9-156.4 -38.8 115.3 -2.1 13.7 -3.3 28 28 A T >> - 0 0 75 1,-0.1 4,-1.8 25,-0.0 3,-0.7 -0.675 30.3-108.6-100.8 155.9 -1.7 12.5 -6.9 29 29 A E H 3> S+ 0 0 72 -2,-0.2 4,-2.3 1,-0.2 5,-0.2 0.767 118.2 64.8 -50.7 -26.1 -0.5 9.1 -8.2 30 30 A E H 3> S+ 0 0 136 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.961 105.7 38.5 -63.1 -53.8 2.6 11.0 -9.2 31 31 A T H <> S+ 0 0 45 -3,-0.7 4,-1.3 1,-0.2 -1,-0.2 0.757 116.1 55.5 -68.9 -24.5 3.7 11.8 -5.6 32 32 A L H < S+ 0 0 0 -4,-1.8 4,-0.5 2,-0.2 -1,-0.2 0.867 107.9 47.6 -75.6 -38.2 2.5 8.4 -4.5 33 33 A K H >< S+ 0 0 74 -4,-2.3 3,-2.2 -5,-0.2 6,-0.3 0.988 112.4 45.6 -66.1 -61.8 4.7 6.5 -7.0 34 34 A E H 3< S+ 0 0 121 -4,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.887 95.7 77.5 -48.7 -44.4 7.9 8.4 -6.3 35 35 A S T 3< S+ 0 0 30 -4,-1.3 2,-0.8 -5,-0.2 -1,-0.3 0.798 94.1 56.6 -35.8 -37.1 7.3 8.0 -2.6 36 36 A F S X S- 0 0 3 -3,-2.2 2,-1.1 -4,-0.5 3,-1.1 -0.863 85.4-145.7-106.1 103.2 8.4 4.4 -3.1 37 37 A D T 3 S+ 0 0 158 -2,-0.8 -3,-0.1 1,-0.2 -2,-0.1 -0.520 88.9 26.2 -69.2 97.9 11.9 4.3 -4.7 38 38 A G T 3 S+ 0 0 43 -2,-1.1 24,-0.2 1,-0.3 -1,-0.2 -0.049 85.5 123.7 141.7 -35.7 11.7 1.2 -6.9 39 39 A S < - 0 0 13 -3,-1.1 -1,-0.3 -6,-0.3 22,-0.2 0.057 50.2-147.9 -49.4 165.6 8.0 0.9 -7.7 40 40 A V S S- 0 0 72 20,-2.0 2,-0.3 1,-0.4 21,-0.2 0.691 71.7 -1.9-109.3 -31.5 6.9 0.8 -11.4 41 41 A R E -C 60 0A 185 19,-1.3 19,-0.7 -8,-0.1 -1,-0.4 -0.957 59.1-144.4-154.0 169.0 3.5 2.5 -11.2 42 42 A A E -C 59 0A 13 -2,-0.3 2,-0.3 17,-0.2 17,-0.2 -0.989 7.7-163.8-142.4 149.9 1.0 4.0 -8.8 43 43 A R E -C 58 0A 162 15,-3.2 15,-2.7 -2,-0.3 2,-0.4 -0.973 1.3-163.3-135.4 149.0 -2.7 4.2 -8.5 44 44 A I E -C 57 0A 26 -2,-0.3 13,-0.3 13,-0.3 2,-0.1 -0.997 17.7-128.7-135.9 135.9 -5.2 6.4 -6.5 45 45 A V E - 0 0 39 11,-2.5 9,-1.2 -2,-0.4 10,-0.5 -0.458 23.1-162.0 -80.2 152.9 -8.9 5.9 -5.7 46 46 A T E -C 53 0A 94 7,-0.3 7,-0.2 -2,-0.1 2,-0.1 -0.989 19.6-111.7-138.2 146.2 -11.4 8.6 -6.4 47 47 A D - 0 0 44 5,-2.0 6,-0.0 -2,-0.3 0, 0.0 -0.380 11.6-148.8 -73.8 152.7 -15.0 9.3 -5.2 48 48 A R S S+ 0 0 240 3,-0.1 -1,-0.1 2,-0.1 0, 0.0 0.648 95.8 47.1 -94.3 -19.5 -17.9 9.1 -7.6 49 49 A E S S+ 0 0 168 3,-0.1 -1,-0.1 1,-0.0 -2,-0.0 0.926 130.3 17.3 -85.8 -54.1 -19.9 11.7 -5.8 50 50 A T S S- 0 0 90 2,-0.1 -2,-0.1 0, 0.0 3,-0.1 0.829 91.6-138.9 -87.5 -36.8 -17.3 14.5 -5.4 51 51 A G + 0 0 55 1,-0.3 2,-0.3 0, 0.0 -3,-0.1 0.799 58.2 123.9 81.3 30.2 -14.9 13.2 -8.0 52 52 A S S S- 0 0 48 1,-0.0 -5,-2.0 2,-0.0 -1,-0.3 -0.896 76.3 -77.3-124.1 153.5 -11.8 13.9 -5.8 53 53 A S E - C 0 46A 13 -28,-0.6 -7,-0.3 -2,-0.3 -26,-0.1 -0.250 38.0-149.6 -49.8 112.3 -8.9 11.8 -4.6 54 54 A K E - 0 0 98 -9,-1.2 -29,-0.2 2,-0.2 -1,-0.2 0.908 46.1 -99.7 -52.0 -46.5 -10.5 9.9 -1.6 55 55 A G E S+ 0 0 5 -10,-0.5 -32,-3.1 1,-0.4 -33,-1.7 0.545 90.7 67.9 130.9 23.8 -7.1 9.8 0.1 56 56 A F E +A 21 0A 65 -11,-0.3 -11,-2.5 -35,-0.2 -1,-0.4 -0.974 43.5 147.7-164.6 151.4 -5.7 6.3 -0.6 57 57 A G E -AC 20 44A 0 -37,-2.2 -37,-1.4 -2,-0.3 2,-0.3 -0.602 35.4 -92.3-154.8-143.9 -4.4 4.2 -3.5 58 58 A F E -AC 19 43A 68 -15,-2.7 -15,-3.2 -39,-0.2 2,-0.5 -0.990 14.0-139.8-152.7 156.0 -2.0 1.4 -4.4 59 59 A V E -AC 18 42A 0 -41,-1.7 -41,-1.8 -2,-0.3 2,-0.2 -0.940 17.5-147.4-125.4 110.5 1.6 0.9 -5.6 60 60 A D E - C 0 41A 66 -19,-0.7 -20,-2.0 -2,-0.5 -19,-1.3 -0.540 19.0-169.7 -76.5 137.0 2.3 -1.8 -8.2 61 61 A F - 0 0 12 -45,-0.4 -22,-0.1 -2,-0.2 3,-0.1 -0.893 35.7-116.5-127.3 157.3 5.8 -3.4 -8.0 62 62 A N S S- 0 0 77 -2,-0.3 2,-0.3 -24,-0.2 -1,-0.1 0.856 98.2 -7.3 -58.1 -36.2 7.8 -5.8 -10.2 63 63 A S S > S- 0 0 54 -47,-0.2 4,-2.1 1,-0.1 -1,-0.2 -0.989 73.9-101.1-158.9 156.9 7.6 -8.4 -7.4 64 64 A E H > S+ 0 0 48 -2,-0.3 4,-2.9 1,-0.2 5,-0.2 0.862 119.4 59.7 -47.4 -40.6 6.5 -8.8 -3.8 65 65 A E H > S+ 0 0 160 1,-0.2 4,-2.5 2,-0.2 5,-0.3 0.972 105.0 44.8 -53.3 -62.9 10.2 -8.5 -2.8 66 66 A D H > S+ 0 0 69 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.878 113.3 53.8 -49.8 -42.1 10.6 -5.0 -4.3 67 67 A A H >X S+ 0 0 0 -4,-2.1 4,-1.7 2,-0.2 3,-0.5 0.956 109.7 45.5 -58.7 -53.9 7.3 -4.0 -2.7 68 68 A K H >X S+ 0 0 43 -4,-2.9 4,-2.0 1,-0.3 3,-1.1 0.962 109.1 53.9 -54.5 -57.9 8.4 -5.1 0.8 69 69 A A H 3X S+ 0 0 71 -4,-2.5 4,-0.7 1,-0.3 -1,-0.3 0.784 112.7 47.1 -48.4 -28.8 11.8 -3.4 0.6 70 70 A A H < S+ 0 0 25 -4,-2.1 3,-2.4 1,-0.2 -1,-0.2 0.334 87.8 116.0 -87.7 6.9 8.1 4.4 3.7 75 75 A E T 3< S+ 0 0 135 -4,-0.5 11,-0.3 1,-0.3 -1,-0.2 0.889 96.1 16.1 -39.7 -54.0 7.0 2.5 6.8 76 76 A D T 3 S+ 0 0 144 -3,-0.4 -1,-0.3 -4,-0.4 2,-0.1 -0.002 104.4 127.7-111.4 26.2 7.0 5.7 8.8 77 77 A G < - 0 0 16 -3,-2.4 7,-1.8 7,-0.1 2,-0.4 -0.458 47.1-147.4 -83.7 157.5 7.0 8.0 5.7 78 78 A E E > -D 83 0B 124 5,-0.2 3,-0.7 -2,-0.1 5,-0.3 -0.963 6.9-147.4-130.7 116.2 4.5 10.8 5.0 79 79 A I E > S-D 82 0B 3 3,-1.1 3,-1.3 -2,-0.4 -52,-0.1 -0.610 82.0 -1.9 -82.7 138.1 3.3 11.7 1.5 80 80 A D T 3 S- 0 0 86 -2,-0.3 -1,-0.3 1,-0.3 -53,-0.1 0.897 135.1 -54.3 50.2 45.3 2.5 15.4 0.9 81 81 A G T < S+ 0 0 54 -3,-0.7 2,-0.4 1,-0.2 -1,-0.3 0.792 119.1 114.8 61.2 27.7 3.2 16.2 4.5 82 82 A N E < S-D 79 0B 62 -3,-1.3 -3,-1.1 -58,-0.0 -1,-0.2 -0.996 71.2-115.8-134.1 132.2 0.7 13.5 5.5 83 83 A K E -D 78 0B 154 -2,-0.4 2,-0.4 -5,-0.3 -5,-0.2 -0.430 34.6-164.2 -65.9 131.3 1.3 10.3 7.4 84 84 A V - 0 0 6 -7,-1.8 2,-0.6 -10,-0.2 -62,-0.2 -0.917 12.2-142.4-121.1 146.7 0.6 7.2 5.2 85 85 A T E -B 21 0A 50 -64,-3.1 -64,-1.8 -2,-0.4 2,-0.5 -0.929 11.6-153.7-112.1 119.3 0.1 3.6 6.2 86 86 A L E +B 20 0A 16 -2,-0.6 2,-0.3 -11,-0.3 -66,-0.2 -0.792 23.6 163.7 -94.1 126.0 1.4 0.8 4.0 87 87 A D E -B 19 0A 100 -68,-2.0 -68,-3.2 -2,-0.5 2,-0.4 -0.998 44.8 -98.5-142.8 145.0 -0.3 -2.6 4.1 88 88 A W E -B 18 0A 39 -2,-0.3 2,-1.3 -70,-0.2 -70,-0.2 -0.464 43.3-116.4 -64.7 117.2 -0.4 -5.7 1.9 89 89 A A + 0 0 41 -72,-1.4 -72,-0.2 -2,-0.4 -1,-0.1 -0.352 60.1 149.8 -57.7 91.0 -3.6 -5.5 -0.2 90 90 A K - 0 0 148 -2,-1.3 -75,-0.0 -75,-0.1 -71,-0.0 -0.988 39.9-129.0-132.6 139.7 -5.3 -8.5 1.2 91 91 A P - 0 0 113 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.107 7.6-156.2 -69.7-171.4 -9.0 -9.4 1.6 92 92 A K - 0 0 158 1,-0.1 5,-0.4 6,-0.0 2,-0.3 0.531 30.2-128.3-134.9 -55.7 -10.8 -10.6 4.7 93 93 A G - 0 0 63 3,-0.1 -1,-0.1 1,-0.1 5,-0.0 -0.902 52.6 -35.1 133.0-162.1 -14.0 -12.5 3.9 94 94 A E S S- 0 0 191 -2,-0.3 -1,-0.1 3,-0.0 0, 0.0 0.412 121.4 -48.3 -78.1 3.2 -17.6 -12.5 4.9 95 95 A G S S- 0 0 56 2,-0.1 -2,-0.1 -3,-0.0 -1,-0.0 -0.287 113.0 -21.4 166.7 -71.3 -16.5 -11.6 8.4 96 96 A G S S+ 0 0 62 2,-0.0 2,-0.4 0, 0.0 -3,-0.1 -0.241 74.1 141.7-168.9 69.3 -13.7 -13.6 10.0 97 97 A S + 0 0 88 -5,-0.4 -2,-0.1 1,-0.0 3,-0.1 -0.967 50.1 42.5-121.1 129.3 -13.0 -17.0 8.6 98 98 A G S S+ 0 0 66 -2,-0.4 2,-0.5 1,-0.1 -5,-0.0 -0.670 84.6 70.2 148.2 -88.9 -9.6 -18.6 8.1 99 99 A P + 0 0 90 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.525 65.5 130.9 -69.8 117.5 -7.0 -18.1 10.9 100 100 A S - 0 0 96 -2,-0.5 -3,-0.0 1,-0.1 0, 0.0 -0.937 52.9-135.2-156.2 175.4 -7.9 -20.2 13.9 101 101 A S 0 0 134 -2,-0.3 -1,-0.1 1,-0.1 0, 0.0 0.831 360.0 360.0-104.0 -58.7 -6.7 -22.7 16.5 102 102 A G 0 0 114 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.325 360.0 360.0-126.8 360.0 -9.3 -25.3 16.9