==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 20-JUL-00 1FDF . COMPND 2 MOLECULE: RHODOPSIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR P.L.YEAGLE,C.DANIS,G.CHOI,J.L.ALDERFER,A.D.ALBERT . 25 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2577.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 14 56.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 12.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 28.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A P 0 0 145 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -61.3 -0.4 3.8 -18.1 2 2 A A - 0 0 64 4,-0.0 2,-0.2 0, 0.0 0, 0.0 0.952 360.0 -95.1 -57.2 -49.3 -0.4 5.1 -14.4 3 3 A F > - 0 0 110 3,-0.0 4,-0.5 4,-0.0 5,-0.4 0.405 45.5-125.1 -61.3 129.7 -0.2 1.9 -14.4 4 4 A F T 4 S+ 0 0 144 1,-0.3 4,-0.2 -2,-0.2 0, 0.0 0.673 104.4 33.1 -35.0 -43.0 -4.0 2.4 -14.0 5 5 A A T >>S+ 0 0 37 3,-0.1 4,-2.8 2,-0.1 5,-0.6 0.978 98.5 77.0 -60.9 -77.3 -3.8 0.3 -10.8 6 6 A K H >>S- 0 0 73 -3,-0.3 5,-1.6 1,-0.3 4,-0.8 0.640 120.4 -0.6 -23.5 -65.7 -0.4 0.9 -9.1 7 7 A T H <5S+ 0 0 45 -4,-0.5 -1,-0.3 3,-0.2 -2,-0.1 0.798 124.7 66.7 -97.3 -37.9 -1.0 4.2 -7.5 8 8 A S H 45S+ 0 0 90 -5,-0.4 -2,-0.2 -4,-0.2 -3,-0.1 0.652 119.4 25.6 -61.2 -22.1 -4.6 5.0 -8.5 9 9 A A H <5S- 0 0 73 -4,-2.8 -1,-0.2 0, 0.0 -2,-0.2 0.833 141.0 -16.2 -96.6 -49.1 -5.7 2.0 -6.4 10 10 A V T << - 0 0 51 -4,-0.8 2,-0.5 -5,-0.6 6,-0.3 0.525 60.6-130.0-149.6 -37.9 -3.2 1.3 -3.6 11 11 A Y < - 0 0 126 -5,-1.6 -4,-0.1 -6,-0.4 -3,-0.1 -0.173 55.2-116.2 86.5 -37.7 0.2 2.8 -3.9 12 12 A N >> - 0 0 52 -2,-0.5 2,-2.3 1,-0.1 4,-1.5 -0.091 45.9 -48.4 83.0 172.9 1.6 -0.7 -3.3 13 13 A P T 34 S+ 0 0 80 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.189 115.1 88.4 -76.2 49.8 3.7 -2.2 -0.5 14 14 A V T 34 S+ 0 0 108 -2,-2.3 -2,-0.1 3,-0.0 -3,-0.1 -0.143 112.8 6.0-148.5 24.4 6.1 0.8 -0.8 15 15 A I T X4 S+ 0 0 98 -3,-1.3 3,-2.6 0, 0.0 4,-0.3 -0.191 133.2 50.5-129.7 -46.0 4.2 2.5 1.4 16 16 A Y T 3< S+ 0 0 105 -4,-1.5 -5,-0.0 1,-0.3 -4,-0.0 0.418 88.3 78.1 -76.9 11.5 1.6 0.3 2.8 17 17 A I T > S+ 0 0 83 -5,-0.3 3,-1.9 2,-0.2 -1,-0.3 0.895 96.0 57.6 -59.5 -38.3 3.8 -2.5 3.8 18 18 A M T < S+ 0 0 139 -3,-2.6 -2,-0.2 1,-0.3 -1,-0.1 0.825 100.7 50.9 -59.2 -46.0 4.5 -0.1 6.6 19 19 A M T 3> S+ 0 0 136 -4,-0.3 4,-1.5 4,-0.1 -1,-0.3 0.107 101.3 77.2 -86.6 6.3 1.0 0.2 7.7 20 20 A N H <> + 0 0 106 -3,-1.9 4,-1.6 2,-0.2 -3,-0.1 0.122 48.2 90.1 -80.6-144.3 0.9 -3.5 7.8 21 21 A K H > S- 0 0 131 3,-0.2 4,-1.5 2,-0.2 -1,-0.1 0.743 137.6 -60.7 33.2 35.7 2.7 -5.0 10.7 22 22 A Q H >4 S- 0 0 128 2,-0.2 3,-1.1 1,-0.1 -2,-0.2 1.000 103.6 -36.6 52.2 88.7 -1.1 -4.4 11.5 23 23 A F H 3< S- 0 0 157 -4,-1.5 -3,-0.2 1,-0.3 -2,-0.2 0.667 117.8 -65.4 57.0 21.2 -1.7 -0.7 11.2 24 24 A R H 3< 0 0 175 -4,-1.6 -1,-0.3 1,-0.1 -2,-0.2 0.973 360.0 360.0 35.1 77.4 1.7 -0.8 12.6 25 25 A N << 0 0 121 -4,-1.5 -1,-0.1 -3,-1.1 -2,-0.1 -0.566 360.0 360.0 -56.3 360.0 1.1 -2.2 16.0