==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-APR-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 26-NOV-08 3FDT . COMPND 2 MOLECULE: CHROMOBOX PROTEIN HOMOLOG 5; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.F.AMAYA,M.RAVICHANDRAN,P.LOPPNAU,I.KOZIERADZKI,A.M.EDWARDS . 61 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4393.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 40 65.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 37.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 8.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 11.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A E 0 0 156 0, 0.0 60,-2.9 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 -27.4 18.7 28.2 9.5 2 3 A E E +A 60 0A 75 58,-0.3 2,-0.3 56,-0.0 58,-0.2 -0.825 360.0 174.7 -88.6 137.3 16.9 26.2 12.2 3 4 A Y E -A 59 0A 80 56,-2.4 56,-2.0 -2,-0.4 2,-0.3 -0.976 36.5 -96.1-141.6 154.1 13.7 27.9 13.4 4 5 A V E -A 58 0A 63 -2,-0.3 21,-2.3 54,-0.2 2,-0.4 -0.543 39.1-139.5 -70.7 133.8 10.8 27.1 15.8 5 6 A V E -C 24 0B 5 52,-2.6 19,-0.2 19,-0.3 52,-0.2 -0.775 17.2-172.0 -96.5 138.5 7.8 25.7 14.0 6 7 A E E - 0 0 92 17,-2.9 2,-0.3 -2,-0.4 18,-0.2 0.863 66.8 -11.6 -92.7 -46.0 4.3 26.7 14.9 7 8 A K E -C 23 0B 32 16,-1.4 16,-2.5 41,-0.0 2,-0.6 -0.990 53.2-127.1-155.1 149.6 2.1 24.3 12.8 8 9 A V E +C 22 0B 12 37,-0.4 14,-0.2 -2,-0.3 3,-0.1 -0.944 31.4 178.0 -98.2 123.4 2.3 21.8 10.0 9 10 A L E - 0 0 80 12,-3.2 2,-0.3 -2,-0.6 13,-0.1 0.716 53.8 -3.1-102.4 -30.9 -0.3 22.9 7.5 10 11 A D E -C 21 0B 80 11,-0.8 11,-2.7 2,-0.0 2,-0.3 -0.974 54.2-144.2-160.1 165.3 -0.0 20.5 4.6 11 12 A R E +C 20 0B 98 -2,-0.3 2,-0.3 9,-0.3 9,-0.2 -0.997 16.6 173.5-139.9 144.5 1.9 17.6 3.2 12 13 A R E -C 19 0B 95 7,-2.6 7,-3.0 -2,-0.3 2,-0.5 -0.955 25.9-136.1-143.0 163.1 2.9 16.5 -0.3 13 14 A V E +C 18 0B 92 -2,-0.3 2,-0.4 5,-0.2 5,-0.2 -0.994 34.2 165.0-121.1 120.3 5.0 13.9 -2.0 14 15 A V E > -C 17 0B 54 3,-2.6 3,-1.8 -2,-0.5 -2,-0.1 -0.994 61.5 -10.1-140.7 127.6 7.2 15.3 -4.8 15 16 A K T 3 S- 0 0 201 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.852 129.8 -49.3 55.6 38.4 10.2 13.7 -6.6 16 17 A G T 3 S+ 0 0 80 1,-0.2 2,-0.4 0, 0.0 -1,-0.3 0.555 118.6 99.6 83.1 8.7 10.4 10.8 -4.2 17 18 A Q E < -C 14 0B 85 -3,-1.8 -3,-2.6 20,-0.0 2,-0.4 -0.981 67.5-127.7-131.7 143.4 10.3 12.9 -1.0 18 19 A V E -C 13 0B 34 -2,-0.4 19,-2.6 -5,-0.2 2,-0.3 -0.717 31.6-173.1 -80.2 133.9 7.6 13.8 1.6 19 20 A E E -CD 12 36B 24 -7,-3.0 -7,-2.6 -2,-0.4 2,-0.4 -0.912 9.4-152.6-130.4 152.7 7.5 17.5 2.2 20 21 A Y E -CD 11 35B 7 15,-2.3 15,-2.0 -2,-0.3 2,-0.7 -0.981 17.2-127.7-130.3 140.8 5.5 19.5 4.7 21 22 A L E -CD 10 34B 34 -11,-2.7 -12,-3.2 -2,-0.4 -11,-0.8 -0.794 34.1-158.6 -90.9 119.7 4.2 23.0 4.6 22 23 A L E -CD 8 33B 0 11,-2.6 11,-1.2 -2,-0.7 2,-0.6 -0.821 19.8-154.1-109.8 136.7 5.4 24.8 7.8 23 24 A K E -C 7 0B 37 -16,-2.5 -17,-2.9 -2,-0.4 -16,-1.4 -0.932 30.0-138.2 -99.0 114.5 4.0 27.9 9.5 24 25 A W E > -C 5 0B 0 -2,-0.6 3,-1.8 4,-0.3 -19,-0.3 -0.600 21.8-102.9 -82.6 137.9 7.0 29.2 11.4 25 26 A K T 3 S+ 0 0 134 -21,-2.3 -21,-0.2 -2,-0.3 3,-0.1 -0.367 103.3 4.8 -65.8 128.4 6.6 30.5 14.9 26 27 A G T 3 S+ 0 0 78 1,-0.3 2,-0.3 -2,-0.1 -1,-0.3 0.309 108.7 107.3 80.1 -6.2 6.5 34.3 15.2 27 28 A F S < S- 0 0 65 -3,-1.8 -1,-0.3 1,-0.1 5,-0.0 -0.808 74.6-108.7-103.0 147.3 6.6 34.7 11.3 28 29 A S > - 0 0 59 -2,-0.3 3,-1.7 1,-0.1 -4,-0.3 -0.195 34.2-105.7 -62.1 162.1 3.7 35.8 9.1 29 30 A E G > S+ 0 0 126 1,-0.3 3,-1.5 2,-0.2 -1,-0.1 0.673 116.7 73.0 -64.2 -19.7 2.0 33.2 6.8 30 31 A E G 3 S+ 0 0 164 1,-0.3 -1,-0.3 -7,-0.0 -2,-0.0 0.680 92.7 57.7 -71.8 -11.6 3.8 34.8 3.8 31 32 A H G < S+ 0 0 89 -3,-1.7 -1,-0.3 -7,-0.1 -2,-0.2 0.320 77.6 127.7 -95.2 6.9 7.0 33.2 5.2 32 33 A N < - 0 0 42 -3,-1.5 2,-0.3 -9,-0.1 -9,-0.2 -0.318 37.6-174.0 -56.4 144.8 5.6 29.6 5.1 33 34 A T E -D 22 0B 39 -11,-1.2 -11,-2.6 -13,-0.1 2,-0.3 -0.988 27.8-119.2-141.3 152.5 7.9 27.1 3.3 34 35 A W E -D 21 0B 73 -2,-0.3 28,-0.3 -13,-0.2 -13,-0.2 -0.711 36.5-175.5 -79.0 141.4 7.7 23.5 2.1 35 36 A E E -D 20 0B 3 -15,-2.0 -15,-2.3 -2,-0.3 26,-0.1 -0.997 27.2-111.1-140.9 140.6 10.5 21.4 3.8 36 37 A P E > -D 19 0B 11 0, 0.0 3,-2.3 0, 0.0 -17,-0.3 -0.376 35.0-107.5 -70.0 161.5 11.4 17.9 3.2 37 38 A E G > S+ 0 0 101 -19,-2.6 3,-1.8 1,-0.3 -18,-0.1 0.807 116.4 66.1 -56.6 -34.4 10.7 15.5 6.1 38 39 A K G 3 S+ 0 0 178 1,-0.3 -1,-0.3 -20,-0.2 -19,-0.1 0.665 98.0 54.9 -62.2 -17.0 14.5 15.2 6.8 39 40 A N G < S+ 0 0 22 -3,-2.3 21,-2.4 20,-0.1 2,-0.3 0.534 88.8 100.7 -88.6 -9.5 14.5 18.8 7.8 40 41 A L E < +B 59 0A 26 -3,-1.8 19,-0.2 -4,-0.3 21,-0.0 -0.603 34.6 169.7 -89.3 136.0 11.8 18.5 10.4 41 42 A D E +B 58 0A 99 17,-2.9 17,-2.3 -2,-0.3 15,-0.1 -0.389 59.5 92.8-130.6 51.7 12.4 18.2 14.2 42 43 A C > + 0 0 1 15,-0.3 4,-1.8 1,-0.1 3,-0.4 -0.482 38.0 159.5-142.6 62.2 8.7 18.6 15.2 43 44 A P H > S+ 0 0 65 0, 0.0 4,-2.3 0, 0.0 5,-0.1 0.833 75.9 54.7 -63.9 -31.1 7.2 15.1 15.4 44 45 A E H > S+ 0 0 119 2,-0.2 4,-2.1 1,-0.2 5,-0.1 0.826 106.9 51.2 -74.2 -30.9 4.3 16.2 17.6 45 46 A L H > S+ 0 0 35 -3,-0.4 4,-2.3 2,-0.2 -37,-0.4 0.864 109.3 49.8 -69.5 -39.4 3.3 18.9 15.1 46 47 A I H X S+ 0 0 30 -4,-1.8 4,-3.0 2,-0.2 -2,-0.2 0.942 111.6 51.3 -59.8 -45.3 3.3 16.3 12.3 47 48 A S H X S+ 0 0 64 -4,-2.3 4,-1.1 2,-0.2 -2,-0.2 0.887 108.1 49.6 -57.5 -45.7 1.2 14.1 14.6 48 49 A E H >< S+ 0 0 57 -4,-2.1 3,-0.6 2,-0.2 -1,-0.2 0.929 112.7 49.1 -58.8 -44.5 -1.3 16.9 15.2 49 50 A F H 3< S+ 0 0 62 -4,-2.3 -2,-0.2 1,-0.2 -1,-0.2 0.942 104.1 58.8 -58.7 -49.7 -1.4 17.4 11.4 50 51 A M H 3< 0 0 106 -4,-3.0 -1,-0.2 1,-0.4 -2,-0.2 0.659 360.0 360.0 -64.0 -18.7 -2.0 13.6 10.8 51 52 A K << 0 0 206 -4,-1.1 -1,-0.4 -3,-0.6 -2,-0.2 0.602 360.0 360.0 -74.2 360.0 -5.1 13.8 12.9 52 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 53 10 T A 0 0 152 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -11.9 16.5 20.2 28.3 54 11 T R - 0 0 237 1,-0.1 2,-0.1 0, 0.0 0, 0.0 -0.473 360.0-119.4 -60.7 142.3 12.9 21.4 27.6 55 12 T T - 0 0 118 -2,-0.1 2,-0.3 2,-0.0 -1,-0.1 -0.463 24.8-162.5 -87.4 159.8 12.1 20.4 24.0 56 13 T K - 0 0 59 -15,-0.1 2,-0.8 -2,-0.1 0, 0.0 -0.981 25.1-119.1-135.5 149.4 11.1 22.7 21.2 57 14 T Q + 0 0 36 -2,-0.3 -52,-2.6 -52,-0.2 -15,-0.3 -0.817 53.2 158.9 -86.8 112.5 9.3 21.9 17.9 58 15 T T E -AB 4 41A 34 -17,-2.3 -17,-2.9 -2,-0.8 2,-0.3 -0.846 25.5-172.7-131.8 170.1 11.9 23.0 15.2 59 16 T A E -AB 3 40A 2 -56,-2.0 -56,-2.4 -2,-0.3 2,-0.4 -0.975 29.0-114.9-154.7 152.7 12.9 22.5 11.5 60 17 T R E -A 2 0A 29 -21,-2.4 2,-0.5 -2,-0.3 -58,-0.3 -0.742 31.1-136.1 -83.7 136.8 15.8 23.6 9.2 61 18 T X 0 0 45 -60,-2.9 -26,-0.1 -2,-0.4 -27,-0.0 -0.850 360.0 360.0 -98.5 129.4 14.6 25.9 6.5 62 19 T S 0 0 111 -2,-0.5 -1,-0.1 -28,-0.3 -28,-0.0 -0.146 360.0 360.0 -57.6 360.0 16.1 25.0 3.0