==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=8-FEB-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER REPLICATION 27-MAY-12 4FDB . COMPND 2 MOLECULE: PROBABLE PRIMOSOMAL REPLICATION PROTEIN N; . SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA SOLANACEARUM; . AUTHOR A.KUZIN,H.NEELY,J.SEETHARAMAN,H.WANG,S.SAHDEV,E.L.FOOTE,R.XI . 95 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6453.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 67.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 40 42.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A A 0 0 148 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 130.5 14.9 -10.3 -12.2 2 3 A I + 0 0 157 1,-0.0 2,-0.2 2,-0.0 74,-0.0 -0.337 360.0 167.0 -64.9 141.5 13.9 -10.2 -8.5 3 4 A N + 0 0 79 72,-0.1 2,-0.4 2,-0.0 -1,-0.0 -0.717 19.4 149.2-153.2 94.0 16.3 -11.9 -6.0 4 5 A R - 0 0 150 -2,-0.2 2,-0.4 72,-0.1 72,-0.2 -0.968 24.3-170.9-143.1 121.2 15.3 -10.8 -2.5 5 6 A L E -A 75 0A 47 70,-2.5 70,-1.5 -2,-0.4 2,-0.5 -0.932 2.9-167.7-111.1 130.9 15.6 -12.7 0.8 6 7 A Q E +A 74 0A 129 -2,-0.4 2,-0.4 68,-0.2 68,-0.2 -0.988 19.7 168.1-113.4 129.4 14.0 -11.3 4.0 7 8 A L E -A 73 0A 17 66,-2.5 66,-3.3 -2,-0.5 2,-0.6 -0.993 31.3-156.0-147.4 129.5 15.1 -13.2 7.1 8 9 A V E +A 72 0A 53 -2,-0.4 26,-0.4 64,-0.2 2,-0.3 -0.957 43.3 149.0-101.2 119.8 14.9 -12.6 10.8 9 10 A A E -A 71 0A 3 62,-2.3 62,-3.3 -2,-0.6 2,-0.4 -0.971 47.9-103.9-154.4 158.6 17.8 -14.5 12.3 10 11 A T E -AB 70 32A 44 22,-2.8 22,-2.2 -2,-0.3 2,-0.6 -0.723 32.9-123.2 -90.8 132.5 20.3 -14.6 15.1 11 12 A L E + B 0 31A 0 58,-2.8 57,-3.0 -2,-0.4 20,-0.2 -0.652 32.9 176.7 -72.2 118.8 23.9 -13.6 14.5 12 13 A V E - 0 0 58 18,-2.9 2,-0.3 -2,-0.6 -1,-0.2 0.867 58.6 -22.8 -92.2 -47.3 26.0 -16.6 15.5 13 14 A E E - B 0 30A 96 17,-1.2 17,-2.3 54,-0.1 -1,-0.4 -0.991 53.4-152.9-158.5 160.3 29.4 -15.5 14.6 14 15 A R E - B 0 29A 80 -2,-0.3 15,-0.2 15,-0.2 2,-0.2 -0.989 16.9-126.9-140.0 151.1 31.3 -13.1 12.4 15 16 A E - 0 0 104 13,-2.8 3,-0.1 -2,-0.3 -2,-0.0 -0.515 41.5 -83.8 -89.8 162.0 34.8 -13.1 10.9 16 17 A V - 0 0 128 -2,-0.2 12,-0.3 1,-0.1 -1,-0.1 -0.361 61.3 -91.6 -60.3 142.2 37.4 -10.4 11.1 17 18 A X - 0 0 37 10,-0.1 2,-0.2 -3,-0.1 10,-0.2 -0.325 49.7-176.9 -57.5 137.1 36.8 -7.6 8.5 18 19 A R E -C 26 0A 121 8,-2.3 8,-3.0 -3,-0.1 2,-0.4 -0.773 14.7-129.4-127.4 175.6 38.6 -8.1 5.2 19 20 A Y E -C 25 0A 141 6,-0.3 36,-0.0 -2,-0.2 8,-0.0 -0.971 8.4-127.7-133.6 142.5 38.8 -6.0 2.1 20 21 A T > - 0 0 45 4,-2.4 3,-1.8 -2,-0.4 6,-0.0 -0.325 46.2 -95.5 -69.6 166.2 38.3 -6.4 -1.6 21 22 A P T 3 S+ 0 0 147 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.787 127.9 57.3 -54.2 -26.8 41.1 -5.3 -3.9 22 23 A A T 3 S- 0 0 91 2,-0.1 -3,-0.0 1,-0.0 0, 0.0 0.591 123.6-104.5 -82.0 -9.4 39.2 -2.0 -4.3 23 24 A G S < S+ 0 0 46 -3,-1.8 -1,-0.0 1,-0.3 0, 0.0 0.591 70.3 148.1 96.2 13.9 39.3 -1.4 -0.6 24 25 A V - 0 0 60 1,-0.0 -4,-2.4 31,-0.0 -1,-0.3 -0.711 45.7-127.8 -81.6 124.0 35.7 -2.3 0.1 25 26 A P E -C 19 0A 24 0, 0.0 31,-2.2 0, 0.0 2,-0.4 -0.486 24.6-169.0 -74.9 144.2 35.3 -3.9 3.5 26 27 A I E -CD 18 55A 14 -8,-3.0 -8,-2.3 29,-0.2 2,-0.5 -0.999 9.9-166.2-130.6 132.6 33.5 -7.2 3.8 27 28 A V E - D 0 54A 0 27,-2.5 27,-1.9 -2,-0.4 2,-0.3 -0.973 11.5-157.3-116.5 114.0 32.3 -9.0 7.0 28 29 A N E + D 0 53A 17 -2,-0.5 -13,-2.8 -12,-0.3 2,-0.3 -0.685 22.5 167.6 -81.8 141.4 31.4 -12.6 6.6 29 30 A C E -BD 14 52A 3 23,-2.8 23,-2.8 -2,-0.3 2,-0.4 -0.913 33.6-123.0-147.4 172.4 29.0 -14.0 9.2 30 31 A L E -BD 13 51A 35 -17,-2.3 -18,-2.9 -2,-0.3 -17,-1.2 -0.993 24.4-164.7-120.9 130.8 26.8 -17.0 10.0 31 32 A L E -BD 11 50A 0 19,-2.6 19,-2.4 -2,-0.4 2,-0.5 -0.859 7.4-148.9-113.0 149.5 23.1 -16.5 10.8 32 33 A S E -BD 10 49A 38 -22,-2.2 -22,-2.8 -2,-0.3 2,-0.4 -0.980 9.7-161.1-123.0 122.7 20.8 -19.0 12.4 33 34 A Y E + D 0 48A 45 15,-3.3 15,-1.8 -2,-0.5 2,-0.3 -0.849 13.5 171.3-101.9 136.6 17.1 -19.1 11.6 34 35 A S E + D 0 47A 77 -2,-0.4 2,-0.2 -26,-0.4 13,-0.2 -0.895 32.4 91.6-144.7 114.5 14.5 -20.7 13.8 35 36 A G E - D 0 46A 19 11,-2.6 11,-2.8 -2,-0.3 2,-0.4 -0.811 65.0 -71.6-170.1-156.1 10.8 -20.3 13.0 36 37 A Q E - D 0 45A 100 9,-0.3 2,-0.8 -2,-0.2 9,-0.2 -0.982 23.1-143.3-131.3 137.5 7.7 -21.6 11.3 37 38 A A E > + D 0 44A 17 7,-2.6 7,-1.5 -2,-0.4 3,-0.5 -0.912 18.4 175.9-100.8 107.2 6.8 -21.7 7.6 38 39 A X T 3 S+ 0 0 135 -2,-0.8 -1,-0.2 1,-0.2 5,-0.1 0.552 75.7 76.6 -80.1 -10.6 3.1 -21.0 7.5 39 40 A E T 3 S+ 0 0 165 5,-0.1 -1,-0.2 -3,-0.1 2,-0.2 0.688 77.2 85.4 -75.2 -21.1 3.7 -21.1 3.7 40 41 A A S < S- 0 0 34 -3,-0.5 4,-0.1 4,-0.1 0, 0.0 -0.546 95.0-115.0 -75.0 150.1 3.9 -24.9 3.8 41 42 A Q S S+ 0 0 197 -2,-0.2 2,-0.5 1,-0.1 -1,-0.1 0.931 111.5 38.3 -54.9 -52.8 0.5 -26.6 3.6 42 43 A T S S- 0 0 117 -3,-0.0 -5,-0.1 1,-0.0 -1,-0.1 -0.896 107.2-111.7 -90.4 127.4 0.9 -28.0 7.1 43 44 A A - 0 0 46 -2,-0.5 2,-0.3 -5,-0.1 -5,-0.2 -0.399 48.3-175.4 -54.6 132.2 2.6 -25.3 9.3 44 45 A R E -D 37 0A 156 -7,-1.5 -7,-2.6 -4,-0.1 2,-0.2 -0.982 28.8-107.9-138.4 150.0 6.1 -26.7 10.0 45 46 A Q E -D 36 0A 114 -2,-0.3 2,-0.4 -9,-0.2 -9,-0.3 -0.493 33.6-165.7 -71.6 141.9 9.1 -25.8 12.1 46 47 A V E +D 35 0A 29 -11,-2.8 -11,-2.6 -2,-0.2 2,-0.3 -1.000 12.4 169.5-131.3 131.0 12.1 -24.6 10.1 47 48 A E E +D 34 0A 153 -2,-0.4 2,-0.3 -13,-0.2 -13,-0.2 -0.970 13.7 135.1-142.1 130.7 15.6 -24.3 11.4 48 49 A F E -D 33 0A 82 -15,-1.8 -15,-3.3 -2,-0.3 2,-0.3 -0.977 40.2-126.3-158.3 166.9 18.8 -23.7 9.5 49 50 A S E -D 32 0A 71 -2,-0.3 2,-0.4 -17,-0.2 -17,-0.2 -0.897 24.6-166.7-116.4 152.7 22.0 -21.7 9.4 50 51 A I E -D 31 0A 34 -19,-2.4 -19,-2.6 -2,-0.3 2,-0.3 -1.000 22.5-120.9-142.6 137.0 23.1 -19.6 6.5 51 52 A E E +D 30 0A 84 -2,-0.4 36,-2.8 34,-0.3 2,-0.3 -0.617 41.4 172.7 -73.2 135.8 26.4 -17.9 5.5 52 53 A A E -De 29 87A 0 -23,-2.8 -23,-2.8 -2,-0.3 2,-0.3 -0.845 14.7-164.7-135.1 170.9 25.9 -14.2 5.0 53 54 A L E -De 28 88A 14 34,-2.3 36,-2.9 -2,-0.3 2,-0.4 -0.986 10.6-149.8-155.4 154.9 28.0 -11.1 4.4 54 55 A G E -D 27 0A 0 -27,-1.9 -27,-2.5 -2,-0.3 2,-0.3 -0.985 16.5-163.0-122.9 139.3 27.8 -7.3 4.5 55 56 A A E > -D 26 0A 43 34,-0.5 3,-1.5 -2,-0.4 -29,-0.2 -0.898 54.4 -10.5-120.2 151.7 29.9 -5.1 2.2 56 57 A G T >> S- 0 0 23 -31,-2.2 4,-1.5 -2,-0.3 3,-1.2 -0.409 137.0 -1.1 66.6-135.3 30.7 -1.4 2.5 57 58 A K H 3> S+ 0 0 164 1,-0.3 4,-2.3 2,-0.2 -1,-0.3 0.853 133.9 61.1 -57.1 -31.8 28.7 0.4 5.2 58 59 A X H <> S+ 0 0 33 -3,-1.5 4,-2.4 1,-0.2 -1,-0.3 0.833 99.9 54.5 -66.7 -28.7 27.0 -2.9 5.9 59 60 A A H <> S+ 0 0 0 -3,-1.2 4,-2.4 -34,-0.3 -1,-0.2 0.945 108.5 48.8 -65.1 -47.3 30.4 -4.4 6.8 60 61 A S H < S+ 0 0 64 -4,-1.5 4,-0.4 1,-0.2 -2,-0.2 0.892 111.5 50.4 -58.3 -41.5 30.9 -1.6 9.3 61 62 A V H >< S+ 0 0 17 -4,-2.3 3,-1.2 1,-0.2 4,-0.2 0.939 112.4 45.0 -63.7 -47.6 27.4 -2.2 10.7 62 63 A L H >< S+ 0 0 0 -4,-2.4 3,-1.7 1,-0.3 -2,-0.2 0.857 103.2 66.3 -65.5 -33.7 27.9 -5.9 11.2 63 64 A D T 3< S+ 0 0 65 -4,-2.4 -1,-0.3 1,-0.3 -2,-0.2 0.635 104.3 45.0 -64.7 -15.0 31.4 -5.4 12.7 64 65 A R T < S+ 0 0 165 -3,-1.2 2,-0.4 -4,-0.4 -1,-0.3 0.346 89.7 103.2-110.1 4.5 29.8 -3.7 15.7 65 66 A I S < S- 0 0 3 -3,-1.7 3,-0.1 -4,-0.2 -3,-0.0 -0.760 70.3-124.9 -95.0 131.3 27.0 -6.1 16.4 66 67 A A > - 0 0 55 -2,-0.4 3,-1.8 1,-0.1 -55,-0.2 -0.500 28.7-107.9 -71.7 134.1 27.3 -8.6 19.2 67 68 A P T 3 S+ 0 0 77 0, 0.0 -55,-0.2 0, 0.0 3,-0.1 -0.390 109.0 45.5 -54.5 137.8 26.9 -12.3 18.5 68 69 A G T 3 S+ 0 0 54 -57,-3.0 2,-0.3 1,-0.4 -56,-0.1 0.179 82.9 130.1 106.0 -13.6 23.6 -13.4 19.9 69 70 A T < - 0 0 31 -3,-1.8 -58,-2.8 -58,-0.2 2,-0.5 -0.546 57.4-131.1 -78.0 135.2 21.8 -10.4 18.5 70 71 A V E -A 10 0A 55 -2,-0.3 25,-2.2 -60,-0.2 26,-0.5 -0.756 28.7-164.7 -87.8 129.7 18.6 -11.0 16.5 71 72 A L E -AF 9 94A 0 -62,-3.3 -62,-2.3 -2,-0.5 2,-0.7 -0.902 23.3-142.0-119.9 139.9 18.6 -9.1 13.2 72 73 A D E -AF 8 93A 56 21,-3.1 21,-1.5 -2,-0.4 2,-0.3 -0.909 39.3-172.7 -93.7 107.7 15.9 -8.3 10.6 73 74 A C E -AF 7 92A 4 -66,-3.3 -66,-2.5 -2,-0.7 2,-0.3 -0.806 21.2-179.4-112.3 143.5 17.8 -8.7 7.4 74 75 A V E +AF 6 91A 41 17,-2.4 16,-2.5 -2,-0.3 17,-1.8 -0.953 32.1 98.6-127.0 155.9 17.0 -8.0 3.7 75 76 A G E -AF 5 89A 5 -70,-1.5 -70,-2.5 -2,-0.3 2,-0.3 -0.981 57.2 -73.9 167.0-150.4 19.2 -8.7 0.8 76 77 A F E - F 0 88A 84 12,-2.1 12,-2.9 -2,-0.3 2,-0.3 -0.919 30.7-113.1-140.7 159.2 20.0 -11.1 -2.0 77 78 A L E + F 0 87A 64 -2,-0.3 2,-0.3 10,-0.2 10,-0.2 -0.710 38.5 162.1 -91.8 149.6 21.5 -14.5 -2.7 78 79 A A E - F 0 86A 29 8,-1.8 8,-2.6 -2,-0.3 2,-0.2 -0.947 43.1 -82.4-153.8 168.6 24.7 -14.9 -4.7 79 80 A R E - F 0 85A 184 -2,-0.3 6,-0.2 6,-0.2 5,-0.1 -0.587 31.6-133.1 -74.1 141.4 27.5 -17.4 -5.3 80 81 A K 0 0 71 4,-2.3 -1,-0.1 -2,-0.2 5,-0.1 0.941 360.0 360.0 -58.0 -52.0 30.3 -17.6 -2.8 81 82 A H 0 0 176 3,-0.3 -1,-0.2 -3,-0.0 0, 0.0 -0.867 360.0 360.0-173.8 360.0 32.9 -17.5 -5.6 82 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 83 86 A K 0 0 187 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 172.0 28.4 -23.9 -5.9 84 87 A A - 0 0 64 -5,-0.1 -4,-2.3 1,-0.1 -3,-0.3 -0.155 360.0-135.6 -60.8 154.2 27.7 -22.7 -2.4 85 88 A L E - F 0 79A 94 -6,-0.2 2,-0.4 -5,-0.1 -34,-0.3 -0.793 11.6-158.2-114.9 157.6 25.6 -19.6 -1.8 86 89 A V E - F 0 78A 2 -8,-2.6 -8,-1.8 -2,-0.3 2,-0.8 -0.989 20.4-126.1-134.4 141.4 25.9 -16.6 0.5 87 90 A F E -eF 52 77A 0 -36,-2.8 -34,-2.3 -2,-0.4 2,-0.7 -0.793 22.5-154.2 -86.6 106.9 23.3 -14.2 1.7 88 91 A H E -eF 53 76A 46 -12,-2.9 -12,-2.1 -2,-0.8 2,-0.5 -0.745 12.8-143.7 -82.1 117.3 24.4 -10.6 0.8 89 92 A I E + F 0 75A 7 -36,-2.9 -34,-0.5 -2,-0.7 -14,-0.3 -0.696 28.9 168.4 -87.6 123.2 22.8 -8.3 3.4 90 93 A S E + 0 0 76 -16,-2.5 2,-0.3 -2,-0.5 -15,-0.2 0.597 69.2 24.9-106.0 -15.5 21.7 -5.0 1.9 91 94 A G E - F 0 74A 20 -17,-1.8 -17,-2.4 2,-0.0 2,-0.3 -0.993 65.1-178.4-152.4 144.5 19.6 -3.8 4.8 92 95 A L E + F 0 73A 36 -2,-0.3 2,-0.3 -19,-0.2 -19,-0.2 -0.998 7.5 172.3-148.7 140.0 19.5 -4.5 8.5 93 96 A E E - F 0 72A 135 -21,-1.5 -21,-3.1 -2,-0.3 2,-0.4 -0.983 43.0-102.0-138.7 152.8 17.6 -3.6 11.7 94 97 A H E - F 0 71A 97 -2,-0.3 -23,-0.2 -23,-0.2 -2,-0.0 -0.628 30.7-142.9 -68.0 129.2 17.7 -4.9 15.2 95 98 A H 0 0 107 -25,-2.2 -1,-0.2 -2,-0.4 -24,-0.1 0.907 360.0 360.0 -60.7 -42.2 14.6 -7.1 15.5 96 99 A H 0 0 218 -26,-0.5 -1,-0.1 -3,-0.1 -26,-0.0 -0.834 360.0 360.0-104.1 360.0 13.9 -6.1 19.1