==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 15-DEC-05 2FE9 . COMPND 2 MOLECULE: PROTEIN VTS1; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR T.A.EDWARDS,J.A.BUTTERWICK,A.G.PALMER,A.K.AGGARWAL . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4830.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 66.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 17.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 40.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S 0 0 135 0, 0.0 26,-0.0 0, 0.0 25,-0.0 0.000 360.0 360.0 360.0 -66.5 8.6 -12.9 -5.6 2 2 A N + 0 0 96 2,-0.0 24,-0.1 0, 0.0 23,-0.1 0.898 360.0 155.7 -91.8 -77.4 5.0 -12.0 -6.8 3 3 A S + 0 0 28 21,-0.2 23,-0.2 22,-0.2 22,-0.1 0.919 17.9 147.4 45.8 55.3 4.2 -8.4 -6.0 4 4 A S - 0 0 78 21,-0.4 -1,-0.1 64,-0.0 22,-0.1 0.268 64.1-112.5-100.2 9.4 1.6 -8.2 -8.7 5 5 A M - 0 0 7 20,-0.3 21,-0.1 1,-0.2 20,-0.0 0.979 27.6-141.1 56.6 85.7 -0.5 -5.7 -6.7 6 6 A N > - 0 0 53 19,-0.3 4,-3.1 1,-0.2 3,-0.5 -0.673 6.8-157.6 -79.9 108.1 -3.7 -7.7 -5.9 7 7 A P T 4 S+ 0 0 40 0, 0.0 -1,-0.2 0, 0.0 4,-0.1 0.619 92.2 61.2 -60.9 -11.0 -6.6 -5.3 -6.2 8 8 A K T 4 S+ 0 0 149 2,-0.1 3,-0.4 1,-0.1 -2,-0.0 0.928 113.8 29.8 -79.5 -49.9 -8.5 -7.6 -3.9 9 9 A S T >4 S+ 0 0 31 -3,-0.5 3,-1.7 1,-0.2 7,-0.4 0.850 114.2 62.2 -77.1 -37.3 -6.1 -7.2 -0.9 10 10 A L T 3< S+ 0 0 0 -4,-3.1 -1,-0.2 1,-0.3 -2,-0.1 0.573 113.9 37.5 -66.1 -7.7 -5.1 -3.7 -1.8 11 11 A T T 3 S+ 0 0 22 -3,-0.4 71,-0.4 -5,-0.3 -1,-0.3 0.151 92.8 99.8-129.8 18.1 -8.8 -2.8 -1.3 12 12 A D X> - 0 0 81 -3,-1.7 4,-1.9 69,-0.1 3,-1.7 -0.928 68.7-140.5-110.1 112.9 -9.7 -5.0 1.7 13 13 A P H 3> S+ 0 0 21 0, 0.0 4,-2.5 0, 0.0 5,-0.3 0.672 98.3 72.9 -44.0 -20.6 -9.6 -3.2 5.1 14 14 A K H 3> S+ 0 0 111 2,-0.2 4,-0.7 1,-0.2 8,-0.2 0.968 110.4 26.4 -60.1 -52.9 -8.1 -6.3 6.5 15 15 A L H <4 S+ 0 0 13 -3,-1.7 7,-0.9 -6,-0.3 3,-0.3 0.917 120.0 57.8 -73.9 -47.4 -4.8 -5.6 4.8 16 16 A L H >< S+ 0 0 1 -4,-1.9 3,-0.6 -7,-0.4 24,-0.5 0.902 110.4 43.0 -51.2 -48.5 -5.2 -1.8 4.7 17 17 A K H 3< S+ 0 0 123 -4,-2.5 2,-0.5 1,-0.3 -1,-0.3 0.769 118.8 49.0 -69.4 -24.9 -5.6 -1.6 8.4 18 18 A N T >X S+ 0 0 69 -4,-0.7 4,-2.6 -3,-0.3 3,-1.0 -0.599 71.8 178.0-114.1 66.6 -2.7 -4.1 8.7 19 19 A I H <> S+ 0 0 4 -3,-0.6 4,-2.5 -2,-0.5 5,-0.2 0.825 80.7 56.5 -37.5 -49.8 -0.2 -2.4 6.4 20 20 A P H 3> S+ 0 0 22 0, 0.0 4,-1.2 0, 0.0 -1,-0.3 0.950 112.5 41.6 -47.9 -52.1 2.4 -5.1 7.1 21 21 A M H <> S+ 0 0 63 -3,-1.0 4,-1.3 1,-0.2 -2,-0.2 0.877 109.6 58.7 -61.3 -42.0 -0.2 -7.7 6.0 22 22 A W H < S+ 0 0 0 -4,-2.6 -1,-0.2 -7,-0.9 -3,-0.2 0.860 108.3 46.6 -54.6 -36.6 -1.1 -5.3 3.1 23 23 A L H >X>S+ 0 0 0 -4,-2.5 5,-2.2 -5,-0.3 3,-1.1 0.739 97.8 72.2 -77.2 -26.3 2.6 -5.7 2.2 24 24 A K H ><5S+ 0 0 80 -4,-1.2 3,-0.8 1,-0.3 -2,-0.2 0.906 100.0 45.4 -54.3 -44.3 2.4 -9.4 2.6 25 25 A S T 3<5S+ 0 0 28 -4,-1.3 -21,-0.4 1,-0.2 -19,-0.3 0.562 116.2 48.1 -76.5 -8.7 0.4 -9.6 -0.6 26 26 A L T <45S- 0 0 0 -3,-1.1 -1,-0.2 -5,-0.2 -2,-0.2 0.371 107.9-124.0-109.8 -0.7 2.9 -7.2 -2.2 27 27 A R T <<5S+ 0 0 108 -3,-0.8 -3,-0.2 -4,-0.8 3,-0.2 0.719 86.9 108.0 63.3 21.3 5.9 -9.1 -1.0 28 28 A L > < + 0 0 5 -5,-2.2 3,-2.3 1,-0.1 -4,-0.2 0.038 27.2 116.3-114.5 21.7 7.1 -5.9 0.6 29 29 A H G > + 0 0 68 -6,-0.6 3,-2.2 1,-0.3 4,-0.4 0.666 63.2 81.2 -61.4 -14.3 6.5 -7.0 4.2 30 30 A K G 3 S+ 0 0 120 1,-0.3 3,-0.3 -3,-0.2 -1,-0.3 0.868 98.3 37.5 -55.1 -38.3 10.2 -6.5 4.2 31 31 A Y G <> S+ 0 0 45 -3,-2.3 4,-2.1 1,-0.2 -1,-0.3 -0.046 85.6 114.4-103.2 27.1 9.4 -2.9 4.7 32 32 A S H <> S+ 0 0 15 -3,-2.2 4,-2.3 2,-0.2 -1,-0.2 0.929 77.7 47.3 -63.9 -46.5 6.4 -3.7 6.9 33 33 A D H > S+ 0 0 144 -4,-0.4 4,-0.8 -3,-0.3 -1,-0.2 0.862 115.7 45.8 -62.9 -36.9 8.1 -2.1 9.9 34 34 A A H 4 S+ 0 0 23 1,-0.2 -1,-0.2 2,-0.1 -2,-0.2 0.784 123.5 34.4 -77.0 -28.0 8.9 1.0 7.9 35 35 A L H >< S+ 0 0 0 -4,-2.1 3,-1.0 2,-0.1 -2,-0.2 0.551 102.1 76.4-103.3 -11.0 5.5 1.2 6.3 36 36 A S H 3< S+ 0 0 60 -4,-2.3 -17,-0.2 1,-0.3 -3,-0.2 0.917 85.2 62.3 -66.8 -44.2 3.5 -0.0 9.3 37 37 A G T 3< S+ 0 0 74 -4,-0.8 -1,-0.3 -5,-0.2 -2,-0.1 0.631 102.0 66.5 -56.9 -11.1 3.8 3.2 11.2 38 38 A T S < S- 0 0 13 -3,-1.0 -19,-0.1 1,-0.0 -1,-0.0 -0.959 83.4-135.4-117.1 127.5 1.9 4.6 8.2 39 39 A P > - 0 0 62 0, 0.0 4,-2.5 0, 0.0 -22,-0.1 0.011 29.4-102.9 -66.9-179.8 -1.8 3.7 7.5 40 40 A W H > S+ 0 0 2 -24,-0.5 4,-3.3 2,-0.2 5,-0.4 0.951 119.9 59.6 -72.4 -48.5 -3.1 2.8 4.0 41 41 A I H 4 S+ 0 0 33 1,-0.3 -1,-0.2 2,-0.2 45,-0.1 0.769 118.9 33.2 -50.0 -26.9 -4.8 6.1 3.5 42 42 A E H >> S+ 0 0 93 2,-0.1 4,-0.9 3,-0.1 3,-0.6 0.779 116.5 55.6 -97.2 -36.6 -1.3 7.6 3.9 43 43 A L H >< S+ 0 0 0 -4,-2.5 3,-1.9 1,-0.3 -2,-0.2 0.974 106.9 49.4 -56.8 -58.5 0.6 4.7 2.4 44 44 A I T 3< S+ 0 0 3 -4,-3.3 -1,-0.3 1,-0.3 29,-0.2 0.606 114.2 49.5 -57.1 -12.4 -1.4 4.9 -0.8 45 45 A Y T <4 S+ 0 0 121 -3,-0.6 -1,-0.3 -5,-0.4 -2,-0.2 0.547 93.1 96.2-104.5 -12.7 -0.6 8.6 -0.7 46 46 A L << - 0 0 16 -3,-1.9 2,-0.3 -4,-0.9 -3,-0.1 0.181 62.1-141.5 -62.4-169.2 3.2 8.2 -0.1 47 47 A D > - 0 0 87 1,-0.1 4,-2.9 22,-0.0 5,-0.3 -0.951 32.4 -90.6-152.1 167.1 5.8 8.3 -2.8 48 48 A D H > S+ 0 0 44 -2,-0.3 4,-1.5 1,-0.2 15,-0.1 0.886 127.3 50.3 -48.0 -41.8 9.1 6.6 -3.9 49 49 A E H > S+ 0 0 136 2,-0.2 4,-1.9 1,-0.2 3,-0.3 0.949 110.3 46.3 -64.1 -52.5 10.9 9.3 -1.8 50 50 A T H > S+ 0 0 42 1,-0.2 4,-1.7 2,-0.2 -2,-0.2 0.931 108.1 57.3 -56.7 -47.6 8.8 8.9 1.3 51 51 A L H X>S+ 0 0 0 -4,-2.9 4,-2.7 1,-0.3 5,-2.3 0.869 105.4 51.7 -50.9 -41.0 9.1 5.1 1.2 52 52 A E H <5S+ 0 0 64 -4,-1.5 -1,-0.3 -3,-0.3 -2,-0.2 0.924 105.1 55.5 -61.5 -45.1 12.9 5.6 1.2 53 53 A K H <5S+ 0 0 144 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.822 111.1 45.8 -56.9 -33.4 12.6 7.7 4.3 54 54 A K H <5S- 0 0 77 -4,-1.7 -2,-0.2 -5,-0.1 -1,-0.2 0.967 134.3 -81.4 -73.7 -57.2 10.8 4.9 6.0 55 55 A G T <5S+ 0 0 24 -4,-2.7 2,-2.1 -5,-0.1 -3,-0.2 0.207 92.5 121.3 173.0 -17.2 13.1 2.1 4.9 56 56 A V < + 0 0 0 -5,-2.3 -2,-0.1 1,-0.2 -3,-0.1 -0.480 26.1 156.3 -68.6 83.5 12.1 1.2 1.4 57 57 A L + 0 0 105 -2,-2.1 2,-0.6 -5,-0.1 -1,-0.2 0.652 36.8 104.8 -86.1 -18.2 15.5 2.0 -0.1 58 58 A A > - 0 0 37 -3,-0.2 4,-2.8 1,-0.2 5,-0.4 -0.541 61.1-154.7 -70.4 111.1 15.0 -0.3 -3.1 59 59 A L H > S+ 0 0 84 -2,-0.6 4,-0.7 1,-0.3 -1,-0.2 0.810 101.2 51.7 -52.3 -28.6 14.3 1.9 -6.1 60 60 A G H 4 S+ 0 0 51 3,-0.1 4,-0.4 2,-0.1 -1,-0.3 0.883 113.6 40.4 -75.3 -41.3 12.6 -1.2 -7.3 61 61 A A H > S+ 0 0 8 -3,-0.2 4,-1.9 2,-0.1 -2,-0.2 0.948 120.3 39.3 -74.3 -53.0 10.5 -1.7 -4.2 62 62 A R H >X S+ 0 0 19 -4,-2.8 4,-1.4 2,-0.2 3,-0.7 0.984 115.7 48.2 -63.6 -61.1 9.5 1.8 -3.4 63 63 A R H 3< S+ 0 0 162 -4,-0.7 -1,-0.2 -5,-0.4 4,-0.2 0.770 113.8 53.7 -50.0 -25.0 8.8 3.1 -6.9 64 64 A K H >> S+ 0 0 90 -4,-0.4 3,-2.4 1,-0.2 4,-0.8 0.869 97.8 60.2 -77.7 -40.5 6.9 -0.2 -7.2 65 65 A L H S+ 0 0 117 -3,-2.4 4,-1.5 2,-0.2 -1,-0.2 0.854 108.8 45.9 -78.4 -37.1 1.7 1.2 -8.3 68 68 A A H X S+ 0 0 0 -4,-0.8 4,-1.5 -3,-0.2 -2,-0.2 0.815 106.4 61.7 -72.9 -31.2 -0.1 -0.4 -5.3 69 69 A F H X S+ 0 0 3 -4,-2.3 4,-1.8 1,-0.2 -1,-0.2 0.865 105.7 45.8 -62.8 -38.9 -0.8 3.1 -4.0 70 70 A G H X S+ 0 0 33 -4,-1.0 4,-2.8 2,-0.2 5,-0.3 0.938 106.9 53.9 -73.0 -49.2 -2.9 4.0 -7.0 71 71 A I H X S+ 0 0 38 -4,-1.5 4,-1.6 1,-0.2 -1,-0.2 0.853 112.9 47.1 -54.5 -35.2 -5.0 0.9 -7.3 72 72 A V H X S+ 0 0 0 -4,-1.5 4,-2.1 2,-0.2 -1,-0.2 0.928 111.8 49.9 -71.1 -46.2 -6.0 1.4 -3.7 73 73 A I H X S+ 0 0 38 -4,-1.8 4,-2.6 2,-0.2 5,-0.2 0.954 110.7 47.6 -56.9 -57.4 -6.8 5.1 -4.2 74 74 A D H X S+ 0 0 79 -4,-2.8 4,-1.9 2,-0.3 6,-0.2 0.938 116.1 43.5 -50.9 -55.2 -9.0 4.6 -7.3 75 75 A Y H <>S+ 0 0 67 -4,-1.6 5,-3.1 -5,-0.3 6,-0.8 0.833 114.6 51.8 -60.7 -31.3 -11.0 1.8 -5.7 76 76 A K H ><5S+ 0 0 24 -4,-2.1 3,-0.8 4,-0.2 -1,-0.3 0.829 109.9 49.4 -70.5 -32.8 -11.0 4.0 -2.6 77 77 A E H 3<5S+ 0 0 144 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.749 107.6 54.1 -75.8 -27.1 -12.3 6.8 -4.8 78 78 A R T 3<5S- 0 0 166 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.219 115.1-115.7 -92.1 13.1 -14.9 4.4 -6.2 79 79 A D T < 5S+ 0 0 95 -3,-0.8 -3,-0.2 -5,-0.2 4,-0.1 0.775 80.2 130.4 57.4 26.0 -16.2 3.7 -2.7 80 80 A L < + 0 0 91 -5,-3.1 2,-0.4 -6,-0.2 -4,-0.2 0.645 54.1 73.8 -82.2 -16.5 -15.0 0.1 -3.4 81 81 A I S S- 0 0 2 -6,-0.8 -69,-0.1 -9,-0.1 5,-0.1 -0.845 97.2-104.3-101.3 134.0 -13.1 0.1 -0.1 82 82 A D >> - 0 0 100 -2,-0.4 3,-2.0 -71,-0.4 4,-0.8 -0.307 20.5-133.1 -56.9 130.5 -15.0 -0.2 3.2 83 83 A R T 34 S+ 0 0 155 1,-0.3 -1,-0.2 2,-0.2 -3,-0.0 0.647 102.9 76.7 -59.7 -13.1 -15.2 3.2 4.9 84 84 A S T 34 S+ 0 0 71 1,-0.2 -1,-0.3 0, 0.0 -2,-0.1 0.863 90.0 53.2 -65.3 -36.5 -14.2 1.1 8.0 85 85 A A T <4 0 0 6 -3,-2.0 -1,-0.2 -74,-0.1 -2,-0.2 0.911 360.0 360.0 -63.7 -43.7 -10.6 1.0 6.7 86 86 A Y < 0 0 104 -4,-0.8 -69,-0.0 -5,-0.1 -3,-0.0 -0.203 360.0 360.0 -43.0 360.0 -10.5 4.8 6.3