==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 10-DEC-96 1FGP . COMPND 2 MOLECULE: FD GENE 3 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE FD; . AUTHOR P.HOLLIGER,L.RIECHMANN . 70 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4494.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 61.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 27 38.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 8.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A E 0 0 127 0, 0.0 2,-1.5 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 153.3 12.1 -7.5 -1.2 2 2 A T >> - 0 0 77 1,-0.2 4,-2.6 59,-0.1 3,-1.2 -0.623 360.0-168.7 -84.6 89.2 10.8 -9.5 1.8 3 3 A V H 3> S+ 0 0 70 -2,-1.5 4,-1.2 1,-0.3 -1,-0.2 0.820 86.7 64.2 -48.8 -25.6 7.1 -9.9 0.9 4 4 A E H 3> S+ 0 0 151 2,-0.2 4,-1.5 3,-0.2 -1,-0.3 0.945 110.7 33.3 -65.8 -44.4 6.7 -11.1 4.5 5 5 A S H <> S+ 0 0 62 -3,-1.2 4,-1.5 2,-0.2 -2,-0.2 0.942 112.2 59.8 -77.1 -47.0 7.8 -7.7 5.9 6 6 A a H < S+ 0 0 1 -4,-2.6 5,-0.2 1,-0.3 -1,-0.2 0.839 116.6 37.6 -50.0 -27.3 6.2 -5.6 3.1 7 7 A L H < S+ 0 0 52 -4,-1.2 -1,-0.3 -5,-0.4 -2,-0.2 0.760 104.7 65.9 -95.1 -27.6 3.0 -7.3 4.3 8 8 A A H < S+ 0 0 79 -4,-1.5 -2,-0.2 -5,-0.2 -3,-0.2 0.696 83.8 112.1 -66.0 -12.7 3.9 -7.2 8.0 9 9 A K S < S- 0 0 68 -4,-1.5 4,-0.1 1,-0.2 -3,-0.0 0.180 99.4 -83.6 -46.7 179.9 3.6 -3.4 7.3 10 10 A P - 0 0 82 0, 0.0 3,-0.5 0, 0.0 -1,-0.2 0.538 68.7-114.7 -72.1 -1.9 0.7 -1.6 9.0 11 11 A H S S- 0 0 104 1,-0.2 2,-1.4 -5,-0.2 46,-0.3 0.996 72.2 -26.6 69.2 81.4 -1.4 -2.8 6.1 12 12 A T E S+A 56 0A 18 44,-0.8 44,-0.9 1,-0.2 2,-0.4 -0.331 94.1 121.5 86.0 -59.3 -2.6 0.2 4.0 13 13 A E E +A 55 0A 127 -2,-1.4 2,-0.3 -3,-0.5 42,-0.2 -0.148 68.2 54.3 -44.8 97.1 -2.7 3.0 6.6 14 14 A N E S-A 54 0A 57 40,-1.9 40,-1.8 -2,-0.4 2,-0.3 -0.952 70.8-142.0 168.5-149.5 -0.3 5.2 4.6 15 15 A S E -A 53 0A 40 -2,-0.3 2,-0.3 38,-0.2 38,-0.2 -0.986 4.4-152.3 178.8-173.1 -0.0 6.7 1.1 16 16 A F E -A 52 0A 56 36,-1.8 36,-2.0 -2,-0.3 3,-0.3 -0.966 15.6-124.5-173.6 160.3 2.2 7.6 -1.8 17 17 A T S S+ 0 0 57 -2,-0.3 34,-0.3 34,-0.2 14,-0.1 -0.752 88.2 36.5-116.0 164.7 2.4 10.0 -4.7 18 18 A N S S+ 0 0 119 -2,-0.3 33,-0.3 32,-0.2 -1,-0.2 0.738 84.7 179.0 68.9 15.7 2.8 9.4 -8.4 19 19 A V - 0 0 15 31,-1.5 2,-0.2 -3,-0.3 11,-0.2 -0.013 9.5-159.6 -47.0 156.4 0.6 6.4 -7.7 20 20 A W E -B 29 0A 66 9,-2.1 9,-1.8 -3,-0.1 2,-0.3 -0.678 11.4-131.9-129.2-173.9 -0.3 4.3 -10.8 21 21 A K E -B 28 0A 109 -2,-0.2 2,-0.5 7,-0.2 7,-0.2 -0.896 12.1-151.7-147.8 113.9 -3.0 1.8 -11.7 22 22 A D E >> -B 27 0A 40 5,-1.1 4,-1.5 -2,-0.3 5,-1.5 -0.733 6.9-161.1 -89.3 130.0 -2.3 -1.6 -13.2 23 23 A D T 45S+ 0 0 107 -2,-0.5 -1,-0.2 3,-0.2 5,-0.0 0.745 97.3 51.7 -77.5 -20.3 -5.1 -3.1 -15.4 24 24 A K T 45S+ 0 0 156 1,-0.1 -1,-0.1 3,-0.1 -2,-0.0 0.965 113.3 39.6 -78.3 -57.0 -3.3 -6.4 -14.9 25 25 A T T 45S- 0 0 10 38,-0.1 41,-0.3 2,-0.1 42,-0.2 0.861 106.2-140.2 -60.6 -29.7 -3.1 -6.3 -11.1 26 26 A L T <5 + 0 0 125 -4,-1.5 2,-0.3 1,-0.2 -3,-0.2 0.987 63.4 59.0 70.9 59.0 -6.6 -4.8 -11.4 27 27 A D E - C 0 35A 110 3,-1.7 3,-0.9 -2,-1.4 -1,-0.1 -0.265 54.4 -95.3 -88.2 52.5 7.2 2.4 -2.4 33 33 A E T 3 S+ 0 0 174 -2,-1.2 29,-0.1 1,-0.3 3,-0.1 0.861 111.5 5.6 35.4 95.6 10.6 1.4 -3.8 34 34 A G T 3 S+ 0 0 30 1,-0.2 2,-0.3 27,-0.1 -1,-0.3 0.019 128.9 70.1 94.8 -31.0 10.9 -2.3 -2.8 35 35 A a E < -C 32 0A 6 -3,-0.9 -3,-1.7 27,-0.1 2,-0.4 -0.822 64.0-156.0-118.1 159.8 7.3 -2.3 -1.4 36 36 A L E -CD 31 60A 0 24,-1.6 23,-2.1 -2,-0.3 24,-1.6 -0.898 9.5-171.6-139.2 110.7 4.0 -2.2 -3.3 37 37 A W E -CD 30 58A 2 -7,-1.8 -7,-1.0 -2,-0.4 2,-0.4 -0.383 14.1-139.1 -91.6 174.2 0.8 -1.0 -1.5 38 38 A N E -CD 29 57A 6 19,-0.6 19,-1.3 -9,-0.2 2,-0.3 -0.946 6.9-157.0-141.6 122.0 -2.7 -1.2 -3.1 39 39 A A E -CD 28 56A 0 -11,-0.7 -11,-1.6 -2,-0.4 17,-0.2 -0.715 7.6-173.5 -95.6 145.7 -5.5 1.5 -2.9 40 40 A T E - 0 0 96 15,-0.6 -1,-0.2 -2,-0.3 3,-0.1 0.726 55.6 -54.5-101.8 -91.5 -9.1 0.4 -3.4 41 41 A G E S+ 0 0 46 1,-0.2 2,-1.3 14,-0.0 -2,-0.0 0.631 113.9 69.2-120.3 -75.4 -11.7 3.2 -3.6 42 42 A V E + 0 0 134 1,-0.1 13,-0.7 12,-0.0 2,-0.4 -0.223 68.2 138.9 -51.0 89.1 -11.8 5.8 -0.7 43 43 A V E - D 0 54A 17 -2,-1.3 11,-0.2 11,-0.2 2,-0.2 -0.886 56.4-127.1-141.8 109.2 -8.4 7.3 -1.6 44 44 A V E - D 0 53A 102 9,-1.2 9,-1.7 -2,-0.4 2,-0.4 -0.328 38.3-173.9 -54.6 116.6 -7.8 11.1 -1.4 45 45 A b E + D 0 52A 39 7,-0.2 2,-0.3 -2,-0.2 7,-0.2 -0.925 11.9 173.6-120.3 144.6 -6.5 11.9 -4.9 46 46 A T E >> + D 0 51A 91 5,-2.3 5,-1.8 -2,-0.4 4,-0.8 -0.991 56.8 36.5-144.6 151.6 -5.1 15.2 -6.2 47 47 A G T >45S- 0 0 36 -2,-0.3 3,-1.6 2,-0.2 -1,-0.2 0.988 142.0 -38.0 72.0 59.3 -3.4 16.3 -9.5 48 48 A D T 345S- 0 0 151 1,-0.3 -1,-0.2 -3,-0.1 -2,-0.0 0.688 110.1 -68.6 65.2 11.4 -5.4 14.1 -11.9 49 49 A E T 345S+ 0 0 107 2,-0.1 -1,-0.3 1,-0.0 -2,-0.2 0.789 103.1 131.8 77.0 27.6 -5.1 11.5 -9.0 50 50 A T T <<5S+ 0 0 53 -3,-1.6 -31,-1.5 -4,-0.8 2,-0.4 0.859 73.5 36.8 -79.4 -32.5 -1.4 11.1 -9.6 51 51 A Q E