==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 06-DEC-08 3FGH . COMPND 2 MOLECULE: TRANSCRIPTION FACTOR A, MITOCHONDRIAL; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.A.GANGELHOFF,P.MUNGALACHETTY,J.NIX,M.E.A.CHURCHILL . 66 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5406.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 71.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 43 65.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 111 A G 0 0 109 0, 0.0 3,-0.1 0, 0.0 65,-0.0 0.000 360.0 360.0 360.0 160.3 11.0 39.8 52.9 2 112 A K - 0 0 132 1,-0.1 61,-0.1 64,-0.1 60,-0.0 -0.399 360.0-105.6 -61.1 129.2 7.6 38.8 51.4 3 113 A P - 0 0 19 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.237 35.6-123.9 -51.8 144.1 8.0 36.5 48.3 4 114 A K - 0 0 186 -3,-0.1 55,-0.0 1,-0.0 0, 0.0 -0.815 19.8-113.6 -98.7 133.4 7.3 38.3 45.1 5 115 A R - 0 0 198 -2,-0.4 3,-0.1 1,-0.1 51,-0.1 -0.426 41.5-115.9 -61.4 128.7 4.6 36.9 42.7 6 116 A P - 0 0 27 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 -0.262 32.3 -91.5 -69.0 157.2 6.4 35.8 39.5 7 117 A R - 0 0 161 1,-0.1 48,-0.1 2,-0.1 49,-0.1 -0.380 46.4-109.4 -63.4 140.3 5.8 37.5 36.2 8 118 A S > - 0 0 46 1,-0.1 4,-2.7 -2,-0.1 5,-0.2 -0.290 25.7-109.7 -68.0 159.4 3.1 35.9 34.0 9 119 A A H > S+ 0 0 11 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.897 120.4 51.8 -53.4 -45.6 3.9 33.9 30.8 10 120 A Y H > S+ 0 0 74 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.862 112.7 44.4 -62.9 -39.4 2.4 36.7 28.7 11 121 A N H > S+ 0 0 87 2,-0.2 4,-2.4 -3,-0.2 -2,-0.2 0.827 110.1 54.9 -76.3 -31.1 4.5 39.4 30.5 12 122 A V H X S+ 0 0 45 -4,-2.7 4,-3.1 2,-0.2 5,-0.3 0.946 111.0 46.5 -62.0 -47.8 7.7 37.3 30.3 13 123 A Y H X S+ 0 0 7 -4,-2.5 4,-1.9 -5,-0.2 -2,-0.2 0.939 113.1 47.1 -59.3 -52.6 7.3 37.0 26.6 14 124 A V H X S+ 0 0 16 -4,-2.1 4,-1.3 1,-0.2 -2,-0.2 0.933 117.6 43.8 -56.8 -46.3 6.6 40.7 26.0 15 125 A A H X S+ 0 0 49 -4,-2.4 4,-0.6 1,-0.2 3,-0.3 0.925 113.3 48.7 -66.1 -44.2 9.6 41.7 28.2 16 126 A E H < S+ 0 0 104 -4,-3.1 4,-0.2 1,-0.2 3,-0.2 0.846 117.3 41.6 -68.9 -34.7 12.1 39.2 26.9 17 127 A R H >X S+ 0 0 95 -4,-1.9 4,-0.7 -5,-0.3 3,-0.5 0.653 93.9 84.9 -85.4 -17.6 11.3 40.0 23.2 18 128 A F H >X S+ 0 0 69 -4,-1.3 3,-1.1 -3,-0.3 4,-0.6 0.862 80.5 58.3 -55.8 -47.4 11.1 43.8 23.6 19 129 A Q H 3< S+ 0 0 171 -4,-0.6 -1,-0.2 1,-0.3 3,-0.1 0.826 118.5 29.5 -59.3 -38.8 14.8 44.8 23.3 20 130 A E H <4 S+ 0 0 97 -3,-0.5 -1,-0.3 -4,-0.2 -2,-0.2 0.391 97.2 98.6 -99.0 1.3 15.3 43.3 19.8 21 131 A A H << - 0 0 30 -3,-1.1 -2,-0.1 -4,-0.7 -1,-0.1 0.883 69.6-171.4 -63.1 -50.2 11.7 43.8 18.7 22 132 A K < + 0 0 53 -4,-0.6 10,-0.2 1,-0.3 2,-0.2 0.100 37.9 99.3 63.8 168.9 11.9 46.9 16.6 23 133 A G S S- 0 0 53 9,-0.1 -1,-0.3 -3,-0.0 6,-0.2 -0.142 76.9 -26.7 -92.0 -87.7 11.1 49.2 15.0 24 134 A D S S- 0 0 103 -2,-0.2 3,-0.1 4,-0.1 -2,-0.0 0.427 103.7 -2.2 -80.0 -19.2 10.7 52.8 15.7 25 135 A S S > S- 0 0 30 1,-0.1 4,-2.6 0, 0.0 5,-0.2 -0.954 72.8 -97.4-157.1 162.8 9.9 53.7 19.4 26 136 A P H > S+ 0 0 82 0, 0.0 4,-2.5 0, 0.0 5,-0.2 0.919 124.0 53.3 -56.0 -44.1 9.2 51.8 22.6 27 137 A Q H > S+ 0 0 130 2,-0.2 4,-2.4 1,-0.2 5,-0.1 0.903 111.2 45.5 -51.8 -48.2 5.4 52.1 22.0 28 138 A E H > S+ 0 0 82 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.905 110.8 52.0 -70.9 -41.9 5.8 50.6 18.6 29 139 A K H X S+ 0 0 47 -4,-2.6 4,-2.1 2,-0.2 -2,-0.2 0.905 111.6 47.9 -55.2 -45.8 8.1 47.8 19.8 30 140 A L H X S+ 0 0 72 -4,-2.5 4,-2.6 2,-0.2 5,-0.2 0.942 108.9 54.1 -60.0 -48.4 5.5 46.9 22.5 31 141 A K H X S+ 0 0 108 -4,-2.4 4,-1.4 1,-0.2 -2,-0.2 0.883 111.3 45.8 -53.9 -41.9 2.7 46.9 20.0 32 142 A T H X S+ 0 0 35 -4,-2.1 4,-2.7 2,-0.2 -1,-0.2 0.866 110.4 50.7 -73.5 -39.4 4.5 44.4 17.8 33 143 A V H X S+ 0 0 0 -4,-2.1 4,-3.1 2,-0.2 5,-0.3 0.964 107.6 54.3 -61.6 -49.1 5.5 42.0 20.5 34 144 A K H X S+ 0 0 89 -4,-2.6 4,-1.2 1,-0.3 -1,-0.2 0.877 110.3 48.0 -52.6 -39.7 1.9 41.9 21.7 35 145 A E H X S+ 0 0 84 -4,-1.4 4,-1.1 -5,-0.2 3,-0.3 0.933 109.6 52.5 -61.5 -48.3 1.0 41.0 18.1 36 146 A N H >< S+ 0 0 79 -4,-2.7 3,-0.8 1,-0.2 4,-0.4 0.918 105.3 53.7 -58.7 -45.5 3.8 38.3 18.1 37 147 A W H >< S+ 0 0 36 -4,-3.1 3,-1.0 1,-0.2 -1,-0.2 0.886 105.5 56.1 -50.4 -42.1 2.5 36.7 21.4 38 148 A K H 3< S+ 0 0 134 -4,-1.2 -1,-0.2 -5,-0.3 -2,-0.2 0.804 110.7 43.6 -62.9 -28.6 -0.9 36.5 19.6 39 149 A N T << S+ 0 0 134 -4,-1.1 -1,-0.2 -3,-0.8 -2,-0.2 0.214 82.4 127.5-108.4 12.6 0.6 34.5 16.7 40 150 A L < - 0 0 18 -3,-1.0 -3,-0.0 -4,-0.4 2,-0.0 -0.344 66.9-102.1 -58.0 148.6 2.8 32.0 18.6 41 151 A S > - 0 0 60 1,-0.1 4,-2.6 4,-0.0 5,-0.2 -0.322 31.6-110.2 -63.4 159.2 2.4 28.3 17.9 42 152 A D H > S+ 0 0 132 1,-0.2 4,-2.7 2,-0.2 5,-0.1 0.904 119.1 50.5 -58.3 -39.2 0.5 26.3 20.4 43 153 A S H > S+ 0 0 88 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.871 110.7 47.9 -74.6 -31.3 3.7 24.5 21.5 44 154 A E H > S+ 0 0 67 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.933 112.7 48.5 -71.7 -44.5 5.6 27.7 22.0 45 155 A K H X S+ 0 0 62 -4,-2.6 4,-2.6 1,-0.2 5,-0.2 0.958 110.1 53.8 -50.7 -53.4 2.7 29.2 24.0 46 156 A E H X S+ 0 0 140 -4,-2.7 4,-2.6 1,-0.2 -2,-0.2 0.858 106.8 51.3 -52.9 -42.9 2.7 26.0 26.0 47 157 A L H X S+ 0 0 92 -4,-1.9 4,-2.3 2,-0.2 -1,-0.2 0.923 109.8 48.0 -64.4 -47.7 6.4 26.3 26.8 48 158 A Y H X S+ 0 0 17 -4,-2.1 4,-2.2 2,-0.2 -2,-0.2 0.935 114.0 48.0 -56.6 -47.3 6.1 29.9 28.1 49 159 A I H X S+ 0 0 93 -4,-2.6 4,-2.9 1,-0.2 -2,-0.2 0.913 109.9 51.5 -64.8 -40.8 3.1 28.9 30.2 50 160 A Q H X S+ 0 0 76 -4,-2.6 4,-2.2 -5,-0.2 -1,-0.2 0.905 109.6 50.4 -63.3 -41.1 4.8 25.8 31.7 51 161 A H H X S+ 0 0 97 -4,-2.3 4,-1.8 2,-0.2 -1,-0.2 0.928 112.1 46.7 -62.5 -42.0 7.8 27.9 32.7 52 162 A A H X S+ 0 0 4 -4,-2.2 4,-2.4 1,-0.2 -2,-0.2 0.927 109.5 54.6 -65.5 -41.2 5.6 30.5 34.4 53 163 A K H X S+ 0 0 121 -4,-2.9 4,-2.6 1,-0.2 -1,-0.2 0.900 106.8 51.8 -57.0 -42.2 3.7 27.7 36.1 54 164 A E H X S+ 0 0 102 -4,-2.2 4,-2.0 1,-0.2 -1,-0.2 0.919 110.3 47.5 -61.5 -42.2 7.0 26.3 37.5 55 165 A D H X S+ 0 0 54 -4,-1.8 4,-2.3 2,-0.2 -1,-0.2 0.880 111.2 52.2 -66.2 -37.1 7.9 29.8 38.9 56 166 A E H X S+ 0 0 59 -4,-2.4 4,-2.7 2,-0.2 -2,-0.2 0.905 107.5 52.0 -67.6 -39.5 4.3 30.1 40.4 57 167 A T H X S+ 0 0 67 -4,-2.6 4,-2.4 2,-0.2 -2,-0.2 0.927 109.1 49.5 -61.4 -43.2 4.7 26.7 42.1 58 168 A R H X S+ 0 0 133 -4,-2.0 4,-2.7 2,-0.2 -2,-0.2 0.929 111.0 50.5 -60.1 -45.9 8.0 27.9 43.6 59 169 A Y H X S+ 0 0 33 -4,-2.3 4,-2.6 2,-0.2 -2,-0.2 0.907 108.3 52.4 -58.2 -42.6 6.2 31.1 44.8 60 170 A H H X S+ 0 0 97 -4,-2.7 4,-2.0 1,-0.2 -1,-0.2 0.938 110.9 47.1 -59.5 -46.3 3.4 29.0 46.4 61 171 A N H X S+ 0 0 86 -4,-2.4 4,-1.7 1,-0.2 -2,-0.2 0.928 111.6 51.2 -60.6 -44.8 6.0 26.9 48.3 62 172 A E H X S+ 0 0 82 -4,-2.7 4,-2.2 1,-0.2 -2,-0.2 0.892 108.4 51.1 -62.7 -39.6 7.9 30.1 49.4 63 173 A M H < S+ 0 0 82 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.941 110.0 49.8 -61.4 -42.4 4.7 31.7 50.7 64 174 A K H < S+ 0 0 172 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.800 118.5 38.9 -67.9 -28.9 3.9 28.5 52.7 65 175 A S H < 0 0 109 -4,-1.7 -1,-0.2 -5,-0.1 -2,-0.2 0.706 360.0 360.0 -86.2 -26.6 7.5 28.5 54.2 66 176 A W < 0 0 179 -4,-2.2 -64,-0.1 -5,-0.2 -3,-0.0 -0.097 360.0 360.0 -55.4 360.0 7.8 32.3 54.6