==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-DEC-05 2FI0 . COMPND 2 MOLECULE: CONSERVED DOMAIN PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; . AUTHOR R.ZHANG,H.LI,J.ABDULLAH,F.COLLART,M.CYMBOROWSKI,W.MINOR,A.JO . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5033.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 68.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 20.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 31.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 5.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 3 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A V 0 0 173 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 151.6 19.9 -1.9 19.0 2 4 A V + 0 0 76 1,-0.2 3,-0.1 3,-0.0 4,-0.0 -0.686 360.0 141.9 -85.7 132.1 22.3 1.0 18.8 3 5 A M + 0 0 127 -2,-0.4 2,-0.2 1,-0.3 3,-0.2 0.554 58.3 39.3-138.2 -40.8 20.6 4.3 17.9 4 6 A D S S+ 0 0 122 1,-0.2 -1,-0.3 69,-0.0 70,-0.2 -0.696 96.9 39.0-116.9 166.9 22.2 7.1 19.9 5 7 A N + 0 0 71 -2,-0.2 69,-2.4 1,-0.2 2,-0.5 0.837 68.5 157.9 63.3 39.8 25.7 8.0 20.9 6 8 A I E -a 74 0A 63 67,-0.2 2,-0.5 -3,-0.2 -1,-0.2 -0.823 22.3-163.6 -96.2 129.5 27.4 6.9 17.6 7 9 A I E -a 75 0A 2 67,-2.8 69,-2.9 -2,-0.5 2,-0.6 -0.973 7.7-154.6-120.0 124.4 30.8 8.6 17.0 8 10 A D E > -a 76 0A 41 -2,-0.5 3,-0.8 67,-0.2 42,-0.3 -0.878 2.4-165.6 -98.5 118.7 32.4 8.5 13.6 9 11 A V T 3 S+ 0 0 0 67,-2.4 42,-2.2 -2,-0.6 43,-0.3 0.467 82.9 66.2 -83.8 -0.8 36.2 8.8 13.9 10 12 A S T 3 S+ 0 0 61 66,-0.2 -1,-0.2 40,-0.2 39,-0.1 0.414 88.3 74.5-101.3 0.3 36.5 9.7 10.1 11 13 A I S < S- 0 0 47 -3,-0.8 39,-0.7 1,-0.1 40,-0.2 -0.700 99.7 -70.6-109.3 162.6 34.7 13.0 10.2 12 14 A P B >> -B 49 0B 34 0, 0.0 4,-1.4 0, 0.0 3,-0.9 -0.211 40.7-125.4 -54.6 139.2 36.0 16.4 11.5 13 15 A V H 3> S+ 0 0 0 35,-3.2 4,-2.4 1,-0.3 33,-0.2 0.842 109.3 60.2 -57.7 -35.0 36.3 16.6 15.3 14 16 A A H 3> S+ 0 0 1 31,-2.4 4,-2.5 34,-0.3 -1,-0.3 0.872 102.6 51.7 -58.4 -40.2 34.1 19.8 15.3 15 17 A E H <> S+ 0 0 104 -3,-0.9 4,-1.7 30,-0.4 -1,-0.2 0.869 109.2 50.9 -65.6 -38.0 31.2 17.8 13.7 16 18 A V H X S+ 0 0 4 -4,-1.4 4,-2.5 2,-0.2 -2,-0.2 0.955 112.9 44.8 -59.9 -49.5 31.6 15.2 16.4 17 19 A V H < S+ 0 0 6 -4,-2.4 -2,-0.2 1,-0.2 7,-0.2 0.861 109.4 55.3 -71.1 -36.7 31.5 17.7 19.2 18 20 A D H < S+ 0 0 105 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.892 114.9 40.0 -57.5 -42.9 28.6 19.7 17.7 19 21 A K H < S+ 0 0 160 -4,-1.7 -2,-0.2 1,-0.2 -1,-0.2 0.870 130.0 29.4 -76.1 -36.0 26.5 16.5 17.7 20 22 A H >< + 0 0 16 -4,-2.5 3,-2.1 -5,-0.2 4,-0.4 -0.674 62.9 171.9-126.5 76.1 27.8 15.3 21.1 21 23 A P G > S+ 0 0 84 0, 0.0 3,-1.4 0, 0.0 4,-0.4 0.849 79.9 61.5 -54.1 -35.3 28.7 18.3 23.3 22 24 A E G 3 S+ 0 0 102 1,-0.2 4,-0.4 2,-0.1 3,-0.4 0.662 91.4 66.9 -63.2 -21.3 29.2 15.8 26.3 23 25 A V G X> S+ 0 0 0 -3,-2.1 4,-2.3 1,-0.2 3,-0.8 0.702 80.5 78.8 -76.7 -16.7 32.0 14.0 24.5 24 26 A L H <> S+ 0 0 33 -3,-1.4 4,-2.2 -4,-0.4 5,-0.2 0.906 87.7 56.5 -57.8 -43.8 34.3 17.1 24.6 25 27 A E H 34 S+ 0 0 160 -3,-0.4 4,-0.4 -4,-0.4 -1,-0.3 0.794 111.1 45.2 -57.2 -31.5 35.2 16.4 28.3 26 28 A I H X4 S+ 0 0 22 -3,-0.8 3,-1.1 -4,-0.4 -2,-0.2 0.924 110.1 52.7 -76.6 -48.2 36.4 12.9 27.2 27 29 A L H ><>S+ 0 0 1 -4,-2.3 3,-1.8 1,-0.3 5,-1.8 0.820 101.0 59.9 -60.4 -35.3 38.3 14.1 24.1 28 30 A V T 3<5S+ 0 0 31 -4,-2.2 3,-0.5 1,-0.3 5,-0.4 0.730 104.2 52.0 -68.7 -21.1 40.4 16.7 26.1 29 31 A E T < 5S+ 0 0 155 -3,-1.1 -1,-0.3 -4,-0.4 -2,-0.2 0.415 106.0 57.7 -86.9 -0.6 41.7 13.8 28.2 30 32 A L T < 5S- 0 0 7 -3,-1.8 -1,-0.2 -4,-0.2 -2,-0.2 0.075 132.6 -76.8-119.0 21.4 42.7 12.0 24.9 31 33 A G T 5S+ 0 0 39 -3,-0.5 -3,-0.2 27,-0.1 -2,-0.1 0.550 110.5 98.2 99.6 10.1 45.0 14.6 23.4 32 34 A F > < + 0 0 10 -5,-1.8 3,-1.6 1,-0.1 -4,-0.2 0.014 39.2 124.0-114.6 27.7 42.4 17.0 22.0 33 35 A K G > + 0 0 144 -5,-0.4 3,-1.7 1,-0.3 4,-0.3 0.766 64.4 63.3 -72.0 -26.6 42.6 19.5 24.9 34 36 A P G > S+ 0 0 79 0, 0.0 3,-0.8 0, 0.0 -1,-0.3 0.770 95.5 64.9 -61.2 -21.3 43.4 22.6 22.8 35 37 A L G < S+ 0 0 11 -3,-1.6 -2,-0.2 1,-0.2 6,-0.1 0.403 74.1 89.1 -84.8 5.4 40.0 21.9 21.2 36 38 A A G < S+ 0 0 52 -3,-1.7 -1,-0.2 -8,-0.1 -3,-0.1 0.896 77.4 74.5 -60.1 -42.2 38.3 22.7 24.6 37 39 A N S <> S- 0 0 88 -3,-0.8 4,-2.8 -4,-0.3 5,-0.2 -0.627 84.8-139.4 -74.1 125.8 38.3 26.3 23.4 38 40 A P H > S+ 0 0 69 0, 0.0 4,-2.6 0, 0.0 -1,-0.1 0.837 100.4 56.0 -54.0 -41.6 35.6 26.9 20.7 39 41 A L H 4 S+ 0 0 127 2,-0.2 5,-0.1 1,-0.2 4,-0.1 0.935 113.5 40.5 -59.8 -46.7 37.8 29.1 18.5 40 42 A M H >>>S+ 0 0 82 -6,-0.2 3,-1.6 1,-0.2 5,-1.3 0.936 115.9 50.1 -65.5 -49.1 40.5 26.4 18.3 41 43 A R H 3<5S+ 0 0 29 -4,-2.8 -27,-0.2 1,-0.3 -2,-0.2 0.842 111.0 49.5 -59.7 -34.7 38.0 23.6 17.9 42 44 A N T 3<5S+ 0 0 51 -4,-2.6 -1,-0.3 -5,-0.2 -2,-0.2 0.357 120.4 36.7 -91.0 8.3 36.2 25.5 15.1 43 45 A T T X>5S+ 0 0 66 -3,-1.6 3,-1.1 -4,-0.1 4,-0.5 0.587 132.7 18.4-111.9 -79.5 39.5 26.1 13.3 44 46 A V H >X5S+ 0 0 55 -4,-1.1 3,-1.4 1,-0.2 4,-1.3 0.887 123.7 60.4 -60.4 -39.3 41.9 23.1 13.7 45 47 A G H 34 -B 12 0B 5 -2,-0.4 4,-3.4 -37,-0.3 5,-0.2 -0.431 38.8-102.2 -88.1 174.3 39.2 14.0 12.3 50 52 A L H > S+ 0 0 0 -39,-0.7 4,-2.1 -42,-0.3 -40,-0.2 0.866 125.7 51.5 -63.5 -35.9 39.7 11.8 15.4 51 53 A K H > S+ 0 0 35 -42,-2.2 4,-1.1 2,-0.2 -1,-0.2 0.948 116.5 38.3 -65.9 -49.1 41.6 9.4 13.3 52 54 A Q H > S+ 0 0 105 -43,-0.3 4,-1.9 1,-0.2 3,-0.4 0.941 117.1 51.9 -64.5 -49.1 43.9 12.1 11.9 53 55 A G H X S+ 0 0 4 -4,-3.4 4,-3.0 1,-0.2 6,-0.2 0.832 103.7 56.9 -56.9 -38.4 44.1 13.9 15.3 54 56 A S H X>S+ 0 0 5 -4,-2.1 5,-1.9 2,-0.2 4,-0.9 0.865 106.9 49.3 -64.4 -37.9 45.1 10.8 17.2 55 57 A K H <5S+ 0 0 142 -4,-1.1 3,-0.2 -3,-0.4 -2,-0.2 0.908 114.7 45.0 -66.5 -42.3 48.1 10.3 14.9 56 58 A L H <5S+ 0 0 145 -4,-1.9 -2,-0.2 1,-0.2 -1,-0.2 0.896 116.7 44.6 -67.3 -41.3 49.1 14.0 15.5 57 59 A A H <5S- 0 0 45 -4,-3.0 -1,-0.2 -5,-0.2 -2,-0.2 0.584 108.4-123.3 -80.3 -9.4 48.5 13.8 19.2 58 60 A G T <5 + 0 0 63 -4,-0.9 -3,-0.2 1,-0.3 -4,-0.1 0.796 63.7 141.3 66.6 29.8 50.3 10.5 19.6 59 61 A T < - 0 0 22 -5,-1.9 -1,-0.3 -6,-0.2 -2,-0.1 -0.924 55.0-121.7 -98.8 120.1 47.2 8.8 21.2 60 62 A P >> - 0 0 85 0, 0.0 4,-1.5 0, 0.0 3,-0.7 -0.338 14.7-128.8 -59.8 138.8 46.8 5.2 19.9 61 63 A M H 3> S+ 0 0 38 1,-0.2 4,-2.9 2,-0.2 5,-0.2 0.878 108.0 60.8 -57.2 -39.4 43.4 4.7 18.3 62 64 A D H 3> S+ 0 0 128 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.876 102.7 52.0 -55.4 -38.1 42.7 1.7 20.5 63 65 A K H <> S+ 0 0 118 -3,-0.7 4,-2.1 2,-0.2 -1,-0.2 0.917 112.0 46.0 -63.8 -43.8 43.0 4.0 23.6 64 66 A I H X S+ 0 0 0 -4,-1.5 4,-2.5 2,-0.2 -2,-0.2 0.913 113.6 47.8 -64.8 -45.3 40.4 6.3 22.0 65 67 A V H X S+ 0 0 22 -4,-2.9 4,-2.7 2,-0.2 5,-0.2 0.939 113.3 47.8 -63.6 -46.2 38.0 3.5 21.0 66 68 A R H X S+ 0 0 189 -4,-2.6 4,-2.6 -5,-0.2 -1,-0.2 0.910 113.5 48.0 -57.6 -47.5 38.2 1.9 24.5 67 69 A T H X S+ 0 0 32 -4,-2.1 4,-0.9 -5,-0.2 -1,-0.2 0.930 112.7 47.6 -62.8 -46.0 37.6 5.2 26.2 68 70 A L H ><>S+ 0 0 0 -4,-2.5 5,-2.4 1,-0.2 3,-0.9 0.932 113.3 47.6 -62.9 -46.6 34.7 6.1 24.0 69 71 A E H ><5S+ 0 0 102 -4,-2.7 3,-1.6 1,-0.2 -2,-0.2 0.909 108.4 56.0 -59.4 -42.4 33.1 2.7 24.4 70 72 A A H 3<5S+ 0 0 84 -4,-2.6 -1,-0.2 1,-0.3 -2,-0.2 0.664 107.3 50.3 -62.5 -20.8 33.6 2.9 28.2 71 73 A N T <<5S- 0 0 92 -4,-0.9 -1,-0.3 -3,-0.9 -2,-0.2 0.194 130.7 -88.9-105.4 13.8 31.7 6.2 28.3 72 74 A G T < 5S+ 0 0 54 -3,-1.6 2,-0.2 1,-0.3 -3,-0.2 0.445 82.7 128.6 104.4 3.1 28.7 4.8 26.4 73 75 A Y < - 0 0 14 -5,-2.4 2,-0.5 -6,-0.2 -1,-0.3 -0.607 48.6-142.8 -97.3 151.0 29.6 5.5 22.7 74 76 A E E -a 6 0A 85 -69,-2.4 -67,-2.8 -2,-0.2 2,-0.4 -0.955 25.0-142.9-105.0 129.5 29.6 3.2 19.7 75 77 A V E +a 7 0A 17 -2,-0.5 2,-0.3 -69,-0.2 -67,-0.2 -0.755 24.0 168.8-102.4 135.6 32.4 3.9 17.3 76 78 A I E +a 8 0A 79 -69,-2.9 -67,-2.4 -2,-0.4 -66,-0.2 -0.814 49.4 56.9-131.2 173.7 32.3 3.8 13.5 77 79 A G + 0 0 30 -2,-0.3 -1,-0.1 -69,-0.2 -69,-0.1 0.612 67.2 151.8 79.7 13.9 34.6 4.9 10.7 78 80 A L 0 0 79 1,-0.1 -1,-0.2 -3,-0.1 -68,-0.1 -0.312 360.0 360.0 -66.0 156.9 37.6 2.9 11.8 79 81 A D 0 0 165 -2,-0.0 -1,-0.1 -28,-0.0 -69,-0.0 -0.294 360.0 360.0 -69.6 360.0 40.2 1.5 9.3