==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL PROTEIN 07-AUG-00 1FJ7 . COMPND 2 MOLECULE: NUCLEOLIN RBD1; . SOURCE 2 ORGANISM_SCIENTIFIC: MESOCRICETUS AURATUS; . AUTHOR F.H.-T.ALLAIN,D.E.GILBERT,P.BOUVET,J.FEIGON . 101 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7586.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 52.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 18.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 20.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 134 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -80.8 62.0 -2.0 11.2 2 2 A S + 0 0 114 1,-0.0 2,-0.7 0, 0.0 3,-0.2 -0.403 360.0 139.9-145.2 65.4 61.9 -0.7 7.6 3 3 A H + 0 0 160 1,-0.2 -1,-0.0 2,-0.1 0, 0.0 -0.647 20.2 178.3-110.4 77.7 59.7 2.4 7.4 4 4 A M - 0 0 168 -2,-0.7 -1,-0.2 1,-0.1 0, 0.0 0.919 15.1-166.2 -43.2 -50.5 61.6 4.7 4.9 5 5 A L + 0 0 134 -3,-0.2 2,-0.2 1,-0.2 -1,-0.1 0.958 19.8 170.7 61.9 48.5 58.8 7.3 5.2 6 6 A E - 0 0 141 1,-0.1 -1,-0.2 2,-0.0 -2,-0.0 -0.607 34.0-109.7 -91.2 153.5 60.0 9.3 2.2 7 7 A D - 0 0 119 -2,-0.2 2,-2.2 1,-0.1 -1,-0.1 -0.486 35.7 -99.4 -80.7 153.8 57.9 12.1 0.7 8 8 A P S S+ 0 0 133 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.460 86.1 104.9 -72.0 79.7 56.3 11.7 -2.7 9 9 A V - 0 0 107 -2,-2.2 2,-0.4 2,-0.0 -2,-0.1 -0.942 67.6-124.6-160.2 135.2 59.0 13.6 -4.7 10 10 A E + 0 0 152 -2,-0.3 2,-0.2 1,-0.1 0, 0.0 -0.681 27.6 174.9 -84.8 129.6 61.8 12.6 -7.0 11 11 A G S > S- 0 0 50 -2,-0.4 3,-1.6 3,-0.1 -1,-0.1 -0.579 73.4 -59.7-133.9 74.1 65.2 13.8 -6.0 12 12 A S T 3 S- 0 0 102 1,-0.3 3,-0.1 -2,-0.2 -2,-0.1 0.670 77.1 -99.2 63.0 11.1 67.9 12.4 -8.3 13 13 A E T 3 S+ 0 0 160 1,-0.2 2,-0.3 2,-0.1 -1,-0.3 0.810 98.8 108.7 46.5 26.1 66.7 9.0 -7.1 14 14 A S < - 0 0 57 -3,-1.6 -1,-0.2 1,-0.1 -3,-0.1 -0.891 57.6-162.8-128.6 160.0 69.7 9.3 -4.8 15 15 A T S S+ 0 0 90 -2,-0.3 -1,-0.1 1,-0.2 -2,-0.1 0.524 76.4 23.5-118.0 -13.2 70.2 9.8 -1.1 16 16 A T - 0 0 16 1,-0.1 -1,-0.2 51,-0.0 50,-0.1 -0.958 68.2-122.2-148.5 166.5 73.8 10.9 -1.0 17 17 A P S S+ 0 0 87 0, 0.0 2,-0.8 0, 0.0 49,-0.1 0.884 100.2 55.7 -78.8 -42.9 76.6 12.4 -3.1 18 18 A F E S+A 65 0A 64 47,-0.6 47,-4.4 2,-0.0 2,-0.3 -0.804 71.0 150.7 -96.9 110.9 79.1 9.5 -2.8 19 19 A N E +A 64 0A 61 -2,-0.8 2,-0.3 45,-0.3 45,-0.2 -0.975 7.9 152.8-137.3 151.7 77.6 6.2 -3.9 20 20 A L E -A 63 0A 16 43,-1.6 43,-1.7 -2,-0.3 2,-0.4 -0.941 38.9 -94.2-161.3-178.0 79.0 3.0 -5.4 21 21 A F E -AB 62 90A 19 69,-2.7 69,-1.2 -2,-0.3 2,-0.3 -0.860 31.4-168.2-112.4 146.7 78.4 -0.8 -5.7 22 22 A I E -AB 61 89A 2 39,-2.2 39,-0.6 -2,-0.4 67,-0.3 -0.930 5.1-179.4-130.9 156.0 80.0 -3.5 -3.5 23 23 A G E +AB 60 88A 11 65,-1.9 65,-2.5 -2,-0.3 37,-0.2 -0.640 44.4 83.7-136.5-164.7 80.2 -7.3 -3.8 24 24 A N + 0 0 56 35,-0.8 2,-0.5 63,-0.2 36,-0.2 0.999 54.5 169.9 65.6 70.6 81.6 -10.3 -1.8 25 25 A L - 0 0 6 34,-0.9 -1,-0.2 33,-0.2 6,-0.1 -0.951 43.9-106.1-119.2 130.2 78.7 -11.0 0.6 26 26 A N > - 0 0 18 -2,-0.5 3,-1.1 56,-0.2 8,-0.1 -0.322 29.1-166.2 -54.1 108.0 78.5 -14.1 2.8 27 27 A P T 3 S+ 0 0 61 0, 0.0 -1,-0.2 0, 0.0 4,-0.1 0.571 82.4 69.2 -74.5 -8.7 75.7 -16.0 1.1 28 28 A N T 3 S+ 0 0 143 2,-0.1 2,-0.1 30,-0.0 -2,-0.1 0.667 107.0 35.6 -84.0 -14.5 75.5 -18.2 4.3 29 29 A K S < S- 0 0 102 -3,-1.1 2,-0.3 29,-0.1 3,-0.0 -0.319 104.6 -68.2-117.6-157.2 74.1 -15.4 6.3 30 30 A S > - 0 0 53 1,-0.1 4,-1.6 -2,-0.1 5,-0.1 -0.759 26.9-137.5-100.1 146.9 71.7 -12.4 5.6 31 31 A V H > S+ 0 0 13 -2,-0.3 4,-1.7 26,-0.3 -1,-0.1 0.864 106.5 59.6 -69.8 -30.4 72.6 -9.5 3.3 32 32 A A H > S+ 0 0 61 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.914 104.6 49.5 -63.7 -38.2 71.0 -7.2 5.8 33 33 A E H > S+ 0 0 95 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.897 105.5 57.0 -68.1 -36.3 73.5 -8.4 8.4 34 34 A L H X S+ 0 0 0 -4,-1.6 4,-1.5 1,-0.2 -1,-0.2 0.878 104.4 54.3 -62.4 -32.9 76.3 -7.8 6.0 35 35 A K H X S+ 0 0 14 -4,-1.7 4,-2.4 2,-0.2 3,-0.4 0.968 106.9 48.3 -65.8 -50.4 75.2 -4.2 5.8 36 36 A V H X S+ 0 0 83 -4,-1.8 4,-3.0 1,-0.2 5,-0.3 0.885 107.2 57.5 -58.5 -35.6 75.4 -3.7 9.5 37 37 A A H X S+ 0 0 28 -4,-2.1 4,-1.9 1,-0.2 -1,-0.2 0.907 111.4 41.9 -63.6 -35.8 78.8 -5.3 9.5 38 38 A I H X S+ 0 0 0 -4,-1.5 4,-1.3 -3,-0.4 -2,-0.2 0.806 115.7 49.7 -80.2 -27.1 79.9 -2.6 7.0 39 39 A S H X S+ 0 0 39 -4,-2.4 4,-0.9 2,-0.2 -2,-0.2 0.834 115.0 44.1 -79.4 -29.5 78.0 0.1 9.0 40 40 A E H X S+ 0 0 101 -4,-3.0 4,-1.8 -5,-0.3 5,-0.2 0.883 112.9 50.1 -80.9 -38.4 79.6 -1.0 12.3 41 41 A L H X S+ 0 0 63 -4,-1.9 4,-1.1 -5,-0.3 -2,-0.2 0.869 115.3 44.3 -68.1 -32.2 83.1 -1.3 10.7 42 42 A F H X>S+ 0 0 4 -4,-1.3 5,-3.1 2,-0.2 4,-1.1 0.758 108.4 58.9 -82.3 -23.2 82.7 2.2 9.3 43 43 A A H <5S+ 0 0 73 -4,-0.9 -2,-0.2 3,-0.2 -1,-0.2 0.869 113.7 36.8 -73.4 -33.5 81.3 3.4 12.6 44 44 A K H <5S+ 0 0 165 -4,-1.8 -2,-0.2 1,-0.2 -1,-0.2 0.714 114.3 56.5 -89.4 -21.2 84.4 2.4 14.5 45 45 A N H <5S- 0 0 80 -4,-1.1 -2,-0.2 -5,-0.2 -1,-0.2 0.721 115.6-114.3 -80.6 -20.5 86.7 3.4 11.5 46 46 A D T <5S+ 0 0 125 -4,-1.1 -3,-0.2 -5,-0.1 -4,-0.1 0.744 72.3 133.7 91.2 29.9 85.2 6.9 11.6 47 47 A L < - 0 0 15 -5,-3.1 23,-0.1 -6,-0.1 24,-0.1 0.346 54.2-130.5 -84.1-139.3 83.6 6.6 8.2 48 48 A A - 0 0 30 22,-0.2 2,-0.3 19,-0.1 18,-0.2 -0.047 16.9-167.9-177.2 58.4 80.0 7.7 7.5 49 49 A V + 0 0 37 -10,-0.2 16,-0.2 1,-0.2 3,-0.1 -0.384 9.7 175.4 -60.0 117.1 77.9 5.1 5.7 50 50 A V + 0 0 55 14,-2.7 2,-0.3 -2,-0.3 15,-0.2 0.793 64.5 11.3 -95.3 -33.9 74.8 6.9 4.6 51 51 A D E +C 64 0A 62 13,-1.6 13,-2.3 2,-0.0 -1,-0.3 -0.990 53.1 179.9-144.7 153.8 73.1 4.1 2.6 52 52 A V E -C 63 0A 32 -2,-0.3 11,-0.3 11,-0.3 2,-0.3 -0.726 11.0-179.3-155.9 99.7 73.6 0.3 2.1 53 53 A R E -C 62 0A 166 9,-1.3 9,-2.4 -2,-0.2 2,-0.2 -0.694 26.0-118.5-102.3 156.8 71.4 -1.7 -0.2 54 54 A T E -C 61 0A 62 7,-0.3 2,-0.4 -2,-0.3 7,-0.3 -0.589 20.4-149.0 -90.6 154.7 71.5 -5.5 -0.9 55 55 A G E >> -C 60 0A 4 5,-1.1 5,-1.8 -2,-0.2 4,-1.6 -0.981 57.5 -21.6-127.5 128.3 72.2 -6.9 -4.4 56 56 A T T 45S- 0 0 74 -2,-0.4 4,-0.1 1,-0.2 -1,-0.1 0.146 111.4 -45.5 60.7 171.0 70.8 -10.2 -5.6 57 57 A N T 45S- 0 0 126 1,-0.2 -26,-0.3 -3,-0.1 -1,-0.2 0.868 122.3 -44.5 -38.6 -42.3 69.7 -12.9 -3.1 58 58 A R T 45S+ 0 0 116 -3,-0.2 -1,-0.2 -28,-0.1 -2,-0.2 0.128 108.0 108.0 172.4 51.2 73.0 -12.2 -1.3 59 59 A K T <5S- 0 0 113 -4,-1.6 -34,-0.9 1,-0.4 -35,-0.8 0.714 87.0 -1.9-110.5 -31.2 76.0 -11.8 -3.6 60 60 A F E < -AC 23 55A 55 -5,-1.8 -5,-1.1 -37,-0.2 -1,-0.4 -0.989 58.2-163.8-159.4 149.3 76.7 -8.1 -3.6 61 61 A G E -AC 22 54A 0 -39,-0.6 -39,-2.2 -2,-0.3 -7,-0.3 -0.892 16.4-127.1-132.8 164.8 75.3 -4.9 -2.0 62 62 A Y E -AC 21 53A 63 -9,-2.4 -9,-1.3 -2,-0.3 2,-0.3 -0.716 20.0-167.9-110.4 162.4 75.7 -1.1 -2.6 63 63 A V E -AC 20 52A 0 -43,-1.7 -43,-1.6 -11,-0.3 2,-0.3 -0.990 9.7-150.0-151.4 141.6 76.6 1.6 -0.2 64 64 A D E -AC 19 51A 20 -13,-2.3 -14,-2.7 -2,-0.3 -13,-1.6 -0.853 14.5-150.3-112.1 147.5 76.5 5.5 -0.2 65 65 A F E -A 18 0A 0 -47,-4.4 -47,-0.6 -2,-0.3 -16,-0.2 -0.499 17.5-129.1-108.3 179.8 78.9 7.7 1.8 66 66 A E S S- 0 0 120 -18,-0.2 2,-0.3 -2,-0.2 -17,-0.1 0.244 80.1 -5.4-114.1 13.4 78.5 11.2 3.4 67 67 A S S > S- 0 0 31 -49,-0.1 4,-1.3 1,-0.1 -1,-0.1 -0.993 77.1 -86.1 178.9 179.4 81.6 12.9 1.9 68 68 A A H > S+ 0 0 57 -2,-0.3 4,-1.8 1,-0.2 5,-0.1 0.741 125.7 56.2 -77.1 -22.3 84.8 12.6 -0.1 69 69 A E H > S+ 0 0 105 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.796 107.2 46.8 -80.6 -27.1 86.5 11.6 3.1 70 70 A D H > S+ 0 0 11 2,-0.2 4,-1.0 3,-0.2 -2,-0.2 0.788 114.8 48.2 -83.4 -25.9 84.1 8.7 3.6 71 71 A L H X S+ 0 0 49 -4,-1.3 4,-1.3 2,-0.2 -2,-0.2 0.857 111.7 48.5 -80.7 -34.8 84.6 7.7 -0.1 72 72 A E H X S+ 0 0 130 -4,-1.8 4,-1.7 2,-0.2 -2,-0.2 0.896 115.4 43.8 -72.9 -36.1 88.4 7.9 0.2 73 73 A K H X S+ 0 0 68 -4,-1.5 4,-0.6 1,-0.2 -1,-0.2 0.831 108.7 59.6 -76.4 -27.5 88.4 5.8 3.4 74 74 A A H < S+ 0 0 0 -4,-1.0 -1,-0.2 2,-0.2 -2,-0.2 0.853 103.2 52.2 -67.9 -29.5 85.9 3.6 1.7 75 75 A L H >< S+ 0 0 104 -4,-1.3 3,-0.9 1,-0.2 -2,-0.2 0.950 112.8 42.3 -71.2 -46.0 88.5 3.0 -1.0 76 76 A E H >< S+ 0 0 151 -4,-1.7 3,-0.8 1,-0.3 -1,-0.2 0.568 94.6 86.5 -75.9 -4.2 91.1 2.0 1.6 77 77 A L G >< + 0 0 15 -4,-0.6 3,-0.7 1,-0.2 -1,-0.3 0.351 51.5 108.6 -77.8 12.0 88.3 0.1 3.3 78 78 A T G < + 0 0 61 -3,-0.9 -1,-0.2 1,-0.3 -2,-0.1 0.669 61.0 78.3 -63.6 -9.2 89.2 -2.9 1.0 79 79 A G G < S+ 0 0 63 -3,-0.8 -1,-0.3 2,-0.0 -2,-0.1 -0.019 73.4 119.7 -88.1 34.0 90.6 -4.5 4.2 80 80 A L < - 0 0 1 -3,-0.7 6,-0.2 7,-0.3 -42,-0.0 -0.106 43.3-171.5 -85.4-170.2 87.0 -5.4 5.2 81 81 A K > - 0 0 129 4,-0.3 3,-3.9 5,-0.2 5,-0.4 0.053 10.4-161.4-179.1 47.9 85.6 -8.8 5.9 82 82 A V B > S-D 85 0B 5 3,-1.0 3,-2.4 1,-0.3 -56,-0.2 -0.090 86.0 -12.8 -41.0 128.0 81.9 -8.7 6.4 83 83 A F T 3 S- 0 0 85 1,-0.3 -1,-0.3 -50,-0.1 3,-0.1 0.801 140.0 -46.9 44.0 25.9 80.9 -11.9 8.2 84 84 A G T < S+ 0 0 54 -3,-3.9 2,-0.5 1,-0.2 -2,-0.3 0.701 122.4 109.9 90.7 20.4 84.4 -13.0 7.2 85 85 A N B < S-D 82 0B 38 -3,-2.4 2,-1.1 -4,-0.3 -3,-1.0 -0.873 70.5-132.4-131.6 102.4 84.1 -11.8 3.6 86 86 A E - 0 0 92 -2,-0.5 -5,-0.2 -5,-0.4 -63,-0.1 -0.270 33.3-132.4 -53.5 92.9 86.2 -8.7 2.6 87 87 A I - 0 0 0 -2,-1.1 -7,-0.3 -53,-0.1 -63,-0.2 -0.127 20.9-143.3 -47.5 142.6 83.4 -6.9 0.9 88 88 A K E -B 23 0A 97 -65,-2.5 -65,-1.9 -3,-0.0 2,-0.2 -0.689 7.6-140.4-108.1 163.9 84.5 -5.6 -2.5 89 89 A L E -B 22 0A 40 -67,-0.3 2,-0.3 -2,-0.2 -67,-0.3 -0.590 16.1-177.1-115.5-179.3 83.5 -2.3 -4.2 90 90 A E E -B 21 0A 116 -69,-1.2 -69,-2.7 -2,-0.2 -2,-0.0 -0.958 31.4-112.8-172.3 154.1 82.7 -1.2 -7.8 91 91 A K - 0 0 166 -2,-0.3 4,-0.1 -71,-0.2 -71,-0.1 -0.800 37.6-170.8-102.3 98.9 81.8 1.8 -9.9 92 92 A P - 0 0 44 0, 0.0 3,-0.3 0, 0.0 -73,-0.0 0.026 40.1 -63.9 -72.7-174.2 78.2 1.5 -11.1 93 93 A K S S+ 0 0 194 1,-0.2 0, 0.0 2,-0.1 0, 0.0 -0.354 115.0 50.7 -72.1 155.8 76.6 3.8 -13.6 94 94 A G + 0 0 55 -3,-0.1 -1,-0.2 -2,-0.0 0, 0.0 0.757 59.2 163.9 88.9 25.2 76.2 7.5 -12.7 95 95 A R + 0 0 203 -3,-0.3 -76,-0.2 -4,-0.1 -2,-0.1 0.901 66.7 50.4 -43.1 -45.2 79.8 8.0 -11.7 96 96 A D + 0 0 112 1,-0.1 5,-0.0 2,-0.1 0, 0.0 -0.004 51.4 134.3 -80.5-166.4 79.2 11.7 -11.9 97 97 A G + 0 0 61 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.186 56.5 84.3 144.3 -15.8 76.3 13.7 -10.3 98 98 A T S S- 0 0 128 -81,-0.1 -2,-0.1 2,-0.0 0, 0.0 0.807 117.3 -10.5 -83.7 -29.2 78.0 16.7 -8.7 99 99 A R S S- 0 0 237 0, 0.0 2,-0.2 0, 0.0 -3,-0.0 0.492 87.0-135.1-131.8 -74.2 78.0 18.8 -11.9 100 100 A G 0 0 50 1,-0.0 -2,-0.0 0, 0.0 0, 0.0 -0.483 360.0 360.0 126.5 161.1 77.1 17.0 -15.2 101 101 A C 0 0 204 -2,-0.2 -1,-0.0 -5,-0.0 0, 0.0 0.815 360.0 360.0-104.4 360.0 78.4 16.9 -18.8