==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA/ANTIBIOTIC 15-DEC-95 1FJA . COMPND 2 MOLECULE: DNA (5'-D(*AP*AP*GP*CP*GP*CP*TP*T)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR H.CHEN,X.LIU,D.J.PATEL . 20 4 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1797.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 6 30.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 20.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 C T 0 0 92 0, 0.0 3,-0.4 0, 0.0 7,-0.0 0.000 360.0 360.0 360.0 162.3 1.6 8.1 -0.6 2 2 C X B -A 8 0A 81 6,-2.2 6,-2.4 1,-0.3 2,-0.1 -0.681 360.0 -75.1 82.3-110.8 3.5 10.5 1.7 3 3 C P S S+ 0 0 95 0, 0.0 -1,-0.3 0, 0.0 2,-0.1 0.497 133.2 40.1 -71.1 149.4 1.5 11.2 3.7 4 4 C X 0 0 65 -3,-0.4 4,-0.1 -2,-0.1 0, 0.0 0.598 360.0 360.0 -99.0-170.0 0.1 13.0 1.9 5 5 C X 0 0 175 -2,-0.1 -3,-0.3 -3,-0.1 0, 0.0 0.907 360.0 360.0 37.5 360.0 -0.4 11.9 -1.9 6 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 7 7 C T > 0 0 89 0, 0.0 3,-0.5 0, 0.0 15,-0.1 0.000 360.0 360.0 360.0 153.7 2.7 6.2 4.1 8 8 C X B 3 -A 2 0A 76 -6,-2.4 -6,-2.2 1,-0.3 2,-0.1 -0.735 360.0 -74.0 87.2-114.8 5.5 5.8 1.5 9 9 C P T 3 S+ 0 0 62 0, 0.0 -1,-0.3 0, 0.0 2,-0.1 0.482 133.2 39.5 -65.9 144.6 4.7 3.8 -0.3 10 10 C X < 0 0 29 -3,-0.5 10,-0.1 -2,-0.1 -8,-0.0 0.614 360.0 360.0-109.4-179.2 5.3 1.8 1.8 11 11 C X 0 0 134 -3,-0.1 -3,-0.3 -4,-0.1 0, 0.0 0.981 360.0 360.0 53.4 360.0 4.5 2.2 5.5 12 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 13 1 D T 0 0 93 0, 0.0 3,-0.4 0, 0.0 7,-0.0 0.000 360.0 360.0 360.0 162.5 1.7 -7.6 2.2 14 2 D X B -B 20 0B 79 6,-2.2 6,-2.4 1,-0.3 2,-0.1 -0.680 360.0 -75.3 81.9-110.9 3.8 -10.0 0.1 15 3 D P S S+ 0 0 95 0, 0.0 -1,-0.3 0, 0.0 2,-0.1 0.495 133.2 40.2 -71.3 149.6 2.1 -10.8 -2.0 16 4 D X 0 0 67 -3,-0.4 4,-0.1 -2,-0.1 0, 0.0 0.594 360.0 360.0 -98.6-170.2 0.6 -12.6 -0.3 17 5 D X 0 0 176 -2,-0.1 -3,-0.3 -3,-0.1 0, 0.0 0.905 360.0 360.0 37.4 360.0 -0.3 -11.5 3.3 18 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 19 7 D T > 0 0 91 0, 0.0 3,-0.5 0, 0.0 -9,-0.1 0.000 360.0 360.0 360.0 154.0 3.2 -5.8 -2.3 20 8 D X B 3 -B 14 0B 74 -6,-2.4 -6,-2.2 1,-0.3 2,-0.1 -0.734 360.0 -74.1 87.1-114.6 5.7 -5.3 0.5 21 9 D P T 3 S+ 0 0 60 0, 0.0 -1,-0.3 0, 0.0 2,-0.1 0.481 133.2 39.6 -65.8 144.6 4.7 -3.2 2.2 22 10 D X < 0 0 30 -3,-0.5 -14,-0.1 -2,-0.1 -8,-0.0 0.612 360.0 360.0-109.2-179.2 5.4 -1.2 0.2 23 11 D X 0 0 134 -4,-0.1 -3,-0.3 -3,-0.1 0, 0.0 0.981 360.0 360.0 53.4 360.0 5.0 -1.7 -3.7